Rh4AG423300

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002239
Physical Location & Seq
Reverse (-)
72007613 .. 72008234
622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG423300.1

Sequence Viewer

Length: 270 bp
ATGGGAGGAAACAACAGACACAAGAAATCTTCTTTCTCATTCTTCAGCTTCTTCAAGTCTCGGAGGCCTCACCGAGGAGAAGAGATAGAGGATTCATATTTGAGTGCAACAAAGGTGTGGACTAGTCTGGAGGATAGAGGTCGATGGGACGTAGCTGAGCCTGGAATTGACAACAAAGCTGCTGATTTCATTAGCAGAATCCACAAGAACATGGTCTCGGAGTCGGATTGCAAAACCTTCACTGTAAACCCAGCAGCAGGAAAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

89

Amino Acids

10.13

Weight (kDa)

8.85

Isoelectric Point (pI)

58.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 28
AfiI CCNNNNNNNGG 2 cut(s) 74, 257
AgsI TTSAA 1 cut(s) 55
AhlI ACTAGT 1 cut(s) 122
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 3 cut(s) 48, 155, 179
AluI AGCT 3 cut(s) 48, 155, 179
Alw26I GTCTC 2 cut(s) 63, 220
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 179, 254
AsuHPI GGTGA 1 cut(s) 62
BbvI GCAGC 2 cut(s) 166, 266
BccI CCATC 1 cut(s) 138
BciT130I CCWGG 1 cut(s) 162
BcoDI GTCTC 2 cut(s) 63, 220
BcuI ACTAGT 1 cut(s) 122
BfaI CTAG 2 cut(s) 123, 268
BisI GCNGC 2 cut(s) 180, 255
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 2 cut(s) 181, 256
Bme1390I CCNGG 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 162
BpmI CTGGAG 1 cut(s) 149
Bpu1102I GCTNAGC 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 73
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 257
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 73
BseLI CCNNNNNNNGG 2 cut(s) 74, 257
BseMII CTCAG 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 2 cut(s) 166, 266
BseYI CCCAGC 1 cut(s) 250
BshFI GGCC 1 cut(s) 67
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 2 cut(s) 74, 257
BsmAI GTCTC 2 cut(s) 63, 220
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 1 cut(s) 67
Bso31I GGTCTC 1 cut(s) 220
Bsp1720I GCTNAGC 1 cut(s) 156
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 1 cut(s) 148
BspTNI GGTCTC 1 cut(s) 220
BssECI CCNNGG 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 156
BstENI CCTNNNNNAGG 1 cut(s) 72
BstMAI GTCTC 2 cut(s) 63, 220
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstV1I GCAGC 2 cut(s) 166, 266
BsuRI GGCC 1 cut(s) 67
BtsIMutI CAGTG 1 cut(s) 240
CviAII CATG 1 cut(s) 211
CviJI RGCY 5 cut(s) 48, 67, 155, 160, 179
CviKI_1 RGCY 5 cut(s) 48, 67, 155, 160, 179
DdeI CTNAG 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco147I AGGCCT 1 cut(s) 67
Eco31I GGTCTC 1 cut(s) 220
Eco57I CTGAAG 1 cut(s) 28
EcoNI CCTNNNNNAGG 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 160
FaeI CATG 1 cut(s) 214
FaiI YATR 2 cut(s) 97, 212
FaqI GGGAC 1 cut(s) 161
FatI CATG 1 cut(s) 210
Fnu4HI GCNGC 2 cut(s) 180, 255
Fsp4HI GCNGC 2 cut(s) 180, 255
FspBI CTAG 2 cut(s) 123, 268
GluI GCNGC 2 cut(s) 180, 255
GsaI CCCAGC 1 cut(s) 254
GsuI CTGGAG 1 cut(s) 149
HaeIII GGCC 1 cut(s) 67
Hin1II CATG 1 cut(s) 214
HinfI GANTC 3 cut(s) 92, 198, 221
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 2 cut(s) 120, 247
Hpy188I TCNGA 3 cut(s) 63, 220, 226
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 2 cut(s) 120, 247
HpyAV CCTTC 1 cut(s) 247
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 2 cut(s) 107, 231
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 1 cut(s) 214
LpnPI CCDG 5 cut(s) 113, 147, 174, 243, 264
Lsp1109I GCAGC 2 cut(s) 166, 266
MaeI CTAG 2 cut(s) 123, 268
MaeII ACGT 1 cut(s) 150
MboII GAAGA 4 cut(s) 21, 34, 43, 92
MluCI AATT 1 cut(s) 165
MlyI GAGTC 1 cut(s) 230
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 6 cut(s) 57, 68, 78, 82, 124, 131
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
NlaIII CATG 1 cut(s) 214
PceI AGGCCT 1 cut(s) 67
PfeI GAWTC 2 cut(s) 92, 198
PkrI GCNGC 2 cut(s) 181, 256
PleI GAGTC 1 cut(s) 229
PpsI GAGTC 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 160
PspFI CCCAGC 1 cut(s) 250
PspGI CCWGG 1 cut(s) 160
SatI GCNGC 2 cut(s) 180, 255
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 1 cut(s) 162
SetI ASST 7 cut(s) 50, 117, 142, 153, 157, 181, 239
SpeI ACTAGT 1 cut(s) 122
Sse9I AATT 1 cut(s) 165
SseBI AGGCCT 1 cut(s) 67
SspMI CTAG 2 cut(s) 123, 268
StuI AGGCCT 1 cut(s) 67
StyD4I CCNGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 1 cut(s) 153
TaqI TCGA 1 cut(s) 142
TasI AATT 1 cut(s) 165
TfiI GAWTC 2 cut(s) 92, 198
TscAI CASTG 1 cut(s) 247
TseI GCWGC 2 cut(s) 179, 254
TspDTI ATGAA 2 cut(s) 84, 178
TspRI CASTG 1 cut(s) 247
XagI CCTNNNNNAGG 1 cut(s) 72
XspI CTAG 2 cut(s) 123, 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.