Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002239

Physical Location & Seq

Genomic Coordinates Forward (+)

55935889 .. 55964262

Gene Structure 28374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG299400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGGAAAGACGTCGTTGTTCTCCTTCTGCAACATGTTCAAGGCCTGCTTTTCTGGTGGAAGCCGGGACGACACCTACTCTGATGATGGTGGTGTTTATAGAAGAAGAATATGTCCGAGCGATGAGGACAGAGGCGGTTGGACTGCTGAGCCTGGGATCGACCGCAAGGCCACTGCTTTCATTGCAAGGTTCTACGAGAGTCACTTTGATGCTCCATTTTCATATTCTCAAAGTCTATTGCTGCATTATTTTTTTCTATCACATTGCCAGTGCTATTATACATGTATGTACGGGTTTGCTAAGAGTCCAATGAAGGTAAGAAGGAAGCTAGGGCAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

113

Amino Acids

13.02

Weight (kDa)

8.55

Isoelectric Point (pI)

55.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05858 AT5G26620
fragaria_vesca	FvH4_4g21750 FvH4_6g08530
malus_domestica	MD04G1186400.v1.1 MD13G1137300.v1.1 MD13G1137400.v1.1 MD16G1133300.v1.1
prunus_persica	Prupe.1G207900_v2.0.a1 Prupe.4G278700_v2.0.a1 Prupe.6G304200_v2.0.a1 Prupe.6G304300_v2.0.a1
pyrus_communis	pycom04g16470 pycom12g18640
rosa_chinensis	RchiOBHm_Chr1g0321401 RchiOBHm_Chr3g0458591 RchiOBHm_Chr4g0427981
rosa_multiflora	Rmu_co8422555.1_g000001 Rmu_sc0000066.1_g000008 Rmu_sc0000724.1_g000012 Rmu_sc0001634.1_g000005 Rmu_sc0004404.1_g000003
rosa_roxburghii	Rroxscaffold_160G00434010 Rroxscaffold_4G00327780 Rroxscaffold_5G00369640 Rroxscaffold_6G00420960
rosa_rugosa	Rorug03G0030000 Rorug04G0220800
rosa_samantha	Rh1AG044500 Rh1BG042400 Rh3AG088300 Rh3BG091200 Rh3CG091400 Rh3DG092200 Rh4AG278200 Rh4AG423300 Rh4BG283700 Rh4BG435300 Rh4CG299400 Rh4DG281000 Rh4DG431600
rosa_wichuraiana	Rw3G007540 Rw4G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	14
AciI	CCGC	2 cut(s)	135, 163
AclWI	GGATC	1 cut(s)	164
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	1 cut(s)	290
AflIII	ACRYGT	2 cut(s)	33, 281
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	151
AluBI	AGCT	1 cut(s)	328
AluI	AGCT	1 cut(s)	328
AlwI	GGATC	1 cut(s)	164
AoxI	GGCC	2 cut(s)	42, 168
ApeKI	GCWGC	1 cut(s)	241
AsuC2I	CCSGG	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	228
BccI	CCATC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	153
BcnI	CCSGG	1 cut(s)	65
BfaI	CTAG	1 cut(s)	329
BisI	GCNGC	1 cut(s)	242
BlpI	GCTNAGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	243
Bme1390I	CCNGG	2 cut(s)	65, 153
BmrFI	CCNGG	2 cut(s)	65, 153
BmsI	GCATC	1 cut(s)	199
Bpu1102I	GCTNAGC	1 cut(s)	147
BpuMI	CCSGG	1 cut(s)	65
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	268
Bse3DI	GCAATG	2 cut(s)	180, 262
BseBI	CCWGG	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	152
BseMI	GCAATG	2 cut(s)	180, 262
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	228
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	2 cut(s)	44, 170
BsiEI	CGRYCG	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	64
BslFI	GGGAC	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	44, 170
Bsp143I	GATC	1 cut(s)	156
Bsp1720I	GCTNAGC	1 cut(s)	147
BspACI	CCGC	2 cut(s)	135, 163
BspANI	GGCC	2 cut(s)	44, 170
BspCNI	CTCAG	1 cut(s)	139
BspPI	GGATC	1 cut(s)	164
BsrDI	GCAATG	2 cut(s)	180, 262
BsrI	ACTGG	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	152
BssMI	GATC	1 cut(s)	156
BssNI	GRCGYC	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	153
BstACI	GRCGYC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	2 cut(s)	147, 300
BstKTI	GATC	1 cut(s)	159
BstMBI	GATC	1 cut(s)	156
BstMCI	CGRYCG	1 cut(s)	163
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNI	CCWGG	1 cut(s)	153
BstNSI	RCATGY	2 cut(s)	37, 285
BstSCI	CCNGG	2 cut(s)	63, 151
BstV1I	GCAGC	1 cut(s)	228
BsuRI	GGCC	2 cut(s)	44, 170
BtgZI	GCGATG	1 cut(s)	135
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	2 cut(s)	171, 275
Cac8I	GCNNGC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	2 cut(s)	34, 282
CviJI	RGCY	5 cut(s)	44, 63, 151, 170, 328
CviKI_1	RGCY	5 cut(s)	44, 63, 151, 170, 328
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	2 cut(s)	147, 300
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
Eco147I	AGGCCT	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	151
FaeI	CATG	2 cut(s)	37, 285
FaiI	YATR	7 cut(s)	35, 99, 112, 223, 279, 283, 287
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	2 cut(s)	33, 281
Fnu4HI	GCNGC	1 cut(s)	242
Fsp4HI	GCNGC	1 cut(s)	242
FspBI	CTAG	1 cut(s)	329
GluI	GCNGC	1 cut(s)	242
HaeIII	GGCC	2 cut(s)	44, 170
HapII	CCGG	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	2 cut(s)	37, 285
HinfI	GANTC	2 cut(s)	199, 304
HpaII	CCGG	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	82, 117
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	3 cut(s)	34, 307, 315
HpyCH4IV	ACGT	1 cut(s)	11
HpyCH4V	TGCA	3 cut(s)	30, 185, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	2 cut(s)	147, 300
HpySE526I	ACGT	1 cut(s)	11
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	2 cut(s)	37, 285
Kzo9I	GATC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	7 cut(s)	39, 58, 77, 138, 165, 281, 320
Lsp1109I	GCAGC	1 cut(s)	228
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	329
MaeII	ACGT	1 cut(s)	11
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MboII	GAAGA	2 cut(s)	114, 117
MlyI	GAGTC	2 cut(s)	208, 313
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	2 cut(s)	118, 125
MslI	CAYNNNNRTG	1 cut(s)	207
MspI	CCGG	1 cut(s)	64
MspR9I	CCNGG	2 cut(s)	65, 153
MvaI	CCWGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	182
NciI	CCSGG	1 cut(s)	65
NdeII	GATC	1 cut(s)	156
NlaIII	CATG	2 cut(s)	37, 285
NmuCI	GTSAC	1 cut(s)	200
NspI	RCATGY	2 cut(s)	37, 285
PceI	AGGCCT	1 cut(s)	44
PciI	ACATGT	2 cut(s)	33, 281
PkrI	GCNGC	1 cut(s)	243
PleI	GAGTC	2 cut(s)	207, 312
PpsI	GAGTC	2 cut(s)	207, 312
PscI	ACATGT	2 cut(s)	33, 281
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	207
SatI	GCNGC	1 cut(s)	242
Sau3AI	GATC	1 cut(s)	156
SchI	GAGTC	2 cut(s)	208, 313
ScrFI	CCNGG	2 cut(s)	65, 153
SetI	ASST	5 cut(s)	14, 77, 191, 318, 330
SfaNI	GCATC	1 cut(s)	199
SmiMI	CAYNNNNRTG	1 cut(s)	207
SseBI	AGGCCT	1 cut(s)	44
SsiI	CCGC	2 cut(s)	135, 163
SspMI	CTAG	1 cut(s)	329
StuI	AGGCCT	1 cut(s)	44
StyD4I	CCNGG	2 cut(s)	63, 151
TaiI	ACGT	1 cut(s)	14
TaqI	TCGA	1 cut(s)	159
TscAI	CASTG	2 cut(s)	178, 275
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	3 cut(s)	169, 210, 326
TspRI	CASTG	2 cut(s)	178, 275
XceI	RCATGY	2 cut(s)	37, 285
XspI	CTAG	1 cut(s)	329
ZraI	GACGTC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.