Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002239

Physical Location & Seq

Genomic Coordinates Reverse (-)

10579686 .. 10579934

Gene Structure 249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1137400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGGAAAGCAATCTTCACTCTTCTCTTTCTGCAACATATTCAAGGCCTGCTTTTCGAGCGGCAGTAGAGACGATGCATATTACTCCGATGATGGCGGTGTTTATGTTAGACGGAGAATGTGTCCCAGTGATGAGGACAGAGGAGGCTGGACTGCCGAGCCTGGCATTGACCGCAAGGCCACTGCTTTCATTTCCAGGTTCTACGCGAGTCGTGTTTCAGACCCCGAATGCCAAACTTTCGCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

83

Amino Acids

9.19

Weight (kDa)

6.14

Isoelectric Point (pI)

75.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05858 AT5G26620
fragaria_vesca	FvH4_4g21750 FvH4_6g08530
malus_domestica	MD04G1186400.v1.1 MD13G1137300.v1.1 MD13G1137400.v1.1 MD16G1133300.v1.1
prunus_persica	Prupe.1G207900_v2.0.a1 Prupe.4G278700_v2.0.a1 Prupe.6G304200_v2.0.a1 Prupe.6G304300_v2.0.a1
pyrus_communis	pycom04g16470 pycom12g18640
rosa_chinensis	RchiOBHm_Chr1g0321401 RchiOBHm_Chr3g0458591 RchiOBHm_Chr4g0427981
rosa_multiflora	Rmu_co8422555.1_g000001 Rmu_sc0000066.1_g000008 Rmu_sc0000724.1_g000012 Rmu_sc0001634.1_g000005 Rmu_sc0004404.1_g000003
rosa_roxburghii	Rroxscaffold_160G00434010 Rroxscaffold_4G00327780 Rroxscaffold_5G00369640 Rroxscaffold_6G00420960
rosa_rugosa	Rorug03G0030000 Rorug04G0220800
rosa_samantha	Rh1AG044500 Rh1BG042400 Rh3AG088300 Rh3BG091200 Rh3CG091400 Rh3DG092200 Rh4AG278200 Rh4AG423300 Rh4BG283700 Rh4BG435300 Rh4CG299400 Rh4DG281000 Rh4DG431600
rosa_wichuraiana	Rw3G007540 Rw4G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	60
AccII	CGCG	1 cut(s)	206
AciI	CCGC	3 cut(s)	60, 96, 172
AgsI	TTSAA	1 cut(s)	43
AjnI	CCWGG	2 cut(s)	160, 194
Alw26I	GTCTC	1 cut(s)	63
AoxI	GGCC	2 cut(s)	45, 177
BccI	CCATC	1 cut(s)	86
BciT130I	CCWGG	2 cut(s)	162, 196
BcoDI	GTCTC	1 cut(s)	63
BisI	GCNGC	1 cut(s)	61
BlsI	GCNGC	1 cut(s)	62
Bme1390I	CCNGG	2 cut(s)	162, 196
BmrFI	CCNGG	2 cut(s)	162, 196
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	1 cut(s)	64
BmuI	ACTGGG	1 cut(s)	120
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bse1I	ACTGG	1 cut(s)	126
BseBI	CCWGG	2 cut(s)	162, 196
BseNI	ACTGG	1 cut(s)	126
BseRI	GAGGAG	1 cut(s)	156
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	2 cut(s)	47, 179
BslFI	GGGAC	1 cut(s)	108
BsmAI	GTCTC	1 cut(s)	63
BsmBI	CGTCTC	1 cut(s)	63
BsmFI	GGGAC	1 cut(s)	108
BsmI	GAATGC	1 cut(s)	233
BsnI	GGCC	2 cut(s)	47, 179
BspACI	CCGC	3 cut(s)	60, 96, 172
BspANI	GGCC	2 cut(s)	47, 179
BspFNI	CGCG	1 cut(s)	206
BsrBI	CCGCTC	1 cut(s)	60
BsrI	ACTGG	1 cut(s)	126
Bst2UI	CCWGG	2 cut(s)	162, 196
Bst6I	CTCTTC	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	49
BstFNI	CGCG	1 cut(s)	206
BstMAI	GTCTC	1 cut(s)	63
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 171
BstNI	CCWGG	2 cut(s)	162, 196
BstSCI	CCNGG	2 cut(s)	160, 194
BstUI	CGCG	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	47, 179
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	2 cut(s)	133, 180
Cac8I	GCNNGC	1 cut(s)	49
CviJI	RGCY	4 cut(s)	47, 147, 160, 179
CviKI_1	RGCY	4 cut(s)	47, 147, 160, 179
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco147I	AGGCCT	1 cut(s)	47
EcoRII	CCWGG	2 cut(s)	160, 194
EcoT22I	ATGCAT	1 cut(s)	79
Esp3I	CGTCTC	1 cut(s)	63
FaiI	YATR	3 cut(s)	38, 79, 105
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	61
Fsp4HI	GCNGC	1 cut(s)	61
GluI	GCNGC	1 cut(s)	61
HaeIII	GGCC	2 cut(s)	47, 179
HinfI	GANTC	1 cut(s)	208
Hpy188I	TCNGA	2 cut(s)	88, 220
HpyCH4V	TGCA	2 cut(s)	33, 77
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 171
LpnPI	CCDG	7 cut(s)	61, 133, 139, 147, 174, 181, 208
LweI	GCATC	1 cut(s)	64
MbiI	CCGCTC	1 cut(s)	60
MboII	GAAGA	2 cut(s)	6, 13
MluCI	AATT	1 cut(s)	244
MlyI	GAGTC	1 cut(s)	217
MnlI	CCTC	3 cut(s)	127, 134, 137
Mph1103I	ATGCAT	1 cut(s)	79
MspR9I	CCNGG	2 cut(s)	162, 196
Mva1269I	GAATGC	1 cut(s)	233
MvaI	CCWGG	2 cut(s)	162, 196
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	2 cut(s)	57, 171
NmeAIII	GCCGAG	1 cut(s)	181
NsiI	ATGCAT	1 cut(s)	79
PceI	AGGCCT	1 cut(s)	47
PctI	GAATGC	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	62
PleI	GAGTC	1 cut(s)	216
PpsI	GAGTC	1 cut(s)	216
Psp6I	CCWGG	2 cut(s)	160, 194
PspGI	CCWGG	2 cut(s)	160, 194
SatI	GCNGC	1 cut(s)	61
SchI	GAGTC	1 cut(s)	217
ScrFI	CCNGG	2 cut(s)	162, 196
SetI	ASST	1 cut(s)	200
SfaNI	GCATC	1 cut(s)	64
Sse9I	AATT	1 cut(s)	244
SseBI	AGGCCT	1 cut(s)	47
SsiI	CCGC	3 cut(s)	60, 96, 172
StuI	AGGCCT	1 cut(s)	47
StyD4I	CCNGG	2 cut(s)	160, 194
TaqI	TCGA	1 cut(s)	56
TasI	AATT	1 cut(s)	244
TauI	GCSGC	1 cut(s)	63
TscAI	CASTG	2 cut(s)	133, 187
TspDTI	ATGAA	1 cut(s)	178
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	2 cut(s)	133, 187
Zsp2I	ATGCAT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.