Rh4DG281000

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0002239
Physical Location & Seq
Forward (+)
50305361 .. 50327369
22009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG281000.1

Sequence Viewer

Length: 363 bp
ATGGGAAAGACGTCGTTGTTCTCCTTCTGCAACATGTTCAAGGCCTGCTTTTCTGGTGGAAGCCGGGACGACACTTACTCTGATGATGGCGGTGTTTATAGAAGAAGAATATGTCCGAGCGATGAGGACAGAGGCGGTTGGACTGCTGAGCCTGGGATCGACCGCAAGGCCACTGCTTTCATTGCAAGGTTCTACGAGAGTCACGTTTCGGATGCTGAGTACCATGCTTCCAACAAGATGCCAAACTCCAATCTCCCACTGAATCTGATGGATCACCGCAAATCTCATTCACCACTCATTATCACCATAATTTTGGTGAAGGATGACTGTGATGATGAGATGGGGTACTCTCTGTCTCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

120

Amino Acids

13.51

Weight (kDa)

5.74

Isoelectric Point (pI)

48.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 14
AciI CCGC 4 cut(s) 90, 135, 163, 277
AclWI GGATC 2 cut(s) 164, 279
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 2 cut(s) 221, 347
AflIII ACRYGT 1 cut(s) 33
AgsI TTSAA 1 cut(s) 40
AjnI CCWGG 1 cut(s) 151
AlwI GGATC 2 cut(s) 164, 279
AoxI GGCC 2 cut(s) 42, 168
AsuC2I CCSGG 1 cut(s) 65
AsuHPI GGTGA 4 cut(s) 266, 282, 295, 328
BccI CCATC 3 cut(s) 80, 262, 334
BciT130I CCWGG 1 cut(s) 153
BcnI CCSGG 1 cut(s) 65
BlpI GCTNAGC 1 cut(s) 147
Bme1390I CCNGG 2 cut(s) 65, 153
BmrFI CCNGG 2 cut(s) 65, 153
BmsI GCATC 2 cut(s) 202, 228
Bpu1102I GCTNAGC 1 cut(s) 147
BpuMI CCSGG 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 152
Bse3DI GCAATG 1 cut(s) 180
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 152
BseGI GGATG 2 cut(s) 217, 328
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 2 cut(s) 138, 207
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 2 cut(s) 44, 170
BsiEI CGRYCG 1 cut(s) 163
BsiSI CCGG 1 cut(s) 64
BslFI GGGAC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 2 cut(s) 44, 170
Bsp143I GATC 2 cut(s) 156, 271
Bsp1720I GCTNAGC 1 cut(s) 147
BspACI CCGC 4 cut(s) 90, 135, 163, 277
BspANI GGCC 2 cut(s) 44, 170
BspCNI CTCAG 2 cut(s) 139, 208
BspPI GGATC 2 cut(s) 164, 279
BsrDI GCAATG 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 152
BssMI GATC 2 cut(s) 156, 271
BssNI GRCGYC 1 cut(s) 11
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 329
BstACI GRCGYC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 2 cut(s) 147, 216
BstF5I GGATG 2 cut(s) 217, 328
BstKTI GATC 2 cut(s) 159, 274
BstMBI GATC 2 cut(s) 156, 271
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 37
BstSCI CCNGG 2 cut(s) 63, 151
BstXI CCANNNNNNTGG 1 cut(s) 313
BsuRI GGCC 2 cut(s) 44, 170
BtgZI GCGATG 1 cut(s) 135
BtsCI GGATG 2 cut(s) 217, 328
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 171, 257
Cac8I GCNNGC 1 cut(s) 46
Csp6I GTAC 2 cut(s) 220, 346
CviAII CATG 2 cut(s) 34, 224
CviJI RGCY 4 cut(s) 44, 63, 151, 170
CviKI_1 RGCY 4 cut(s) 44, 63, 151, 170
CviQI GTAC 2 cut(s) 220, 346
DdeI CTNAG 2 cut(s) 147, 216
DpnI GATC 2 cut(s) 158, 273
DpnII GATC 2 cut(s) 156, 271
Eco147I AGGCCT 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 151
FaeI CATG 2 cut(s) 37, 227
FaiI YATR 5 cut(s) 35, 99, 112, 225, 308
FalI AAGNNNNNCTT 2 cut(s) 32, 64
FaqI GGGAC 1 cut(s) 80
FatI CATG 2 cut(s) 33, 223
FokI GGATG 2 cut(s) 224, 335
HaeIII GGCC 2 cut(s) 44, 170
HapII CCGG 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 2 cut(s) 37, 227
HinfI GANTC 2 cut(s) 199, 262
HpaII CCGG 1 cut(s) 64
HphI GGTGA 4 cut(s) 266, 282, 295, 328
Hpy188I TCNGA 4 cut(s) 82, 117, 211, 267
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 2 cut(s) 34, 313
HpyCH4III ACNGT 1 cut(s) 329
HpyCH4IV ACGT 2 cut(s) 11, 204
HpyCH4V TGCA 2 cut(s) 30, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 2 cut(s) 147, 216
HpySE526I ACGT 2 cut(s) 11, 204
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 2 cut(s) 37, 227
Kzo9I GATC 2 cut(s) 156, 271
LpnPI CCDG 5 cut(s) 39, 58, 77, 138, 165
LweI GCATC 2 cut(s) 202, 228
MaeII ACGT 2 cut(s) 11, 204
MaeIII GTNAC 1 cut(s) 200
MalI GATC 2 cut(s) 158, 273
MboI GATC 2 cut(s) 156, 271
MboII GAAGA 2 cut(s) 114, 117
MluCI AATT 1 cut(s) 309
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 2 cut(s) 119, 255
MnlI CCTC 2 cut(s) 118, 125
MspI CCGG 1 cut(s) 64
MspR9I CCNGG 2 cut(s) 65, 153
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 182
NciI CCSGG 1 cut(s) 65
NdeII GATC 2 cut(s) 156, 271
NlaIII CATG 2 cut(s) 37, 227
NmuCI GTSAC 1 cut(s) 200
NspI RCATGY 1 cut(s) 37
PceI AGGCCT 1 cut(s) 44
PciI ACATGT 1 cut(s) 33
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PfeI GAWTC 1 cut(s) 262
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
PscI ACATGT 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
RsaI GTAC 2 cut(s) 221, 347
RsaNI GTAC 2 cut(s) 220, 346
Sau3AI GATC 2 cut(s) 156, 271
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 2 cut(s) 65, 153
SetI ASST 3 cut(s) 14, 191, 207
SfaNI GCATC 2 cut(s) 202, 228
Sse9I AATT 1 cut(s) 309
SseBI AGGCCT 1 cut(s) 44
SsiI CCGC 4 cut(s) 90, 135, 163, 277
StuI AGGCCT 1 cut(s) 44
StyD4I CCNGG 2 cut(s) 63, 151
TaaI ACNGT 1 cut(s) 329
TaiI ACGT 2 cut(s) 14, 207
TaqI TCGA 1 cut(s) 159
TasI AATT 1 cut(s) 309
TfiI GAWTC 1 cut(s) 262
TscAI CASTG 2 cut(s) 178, 264
TseFI GTSAC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 169
TspRI CASTG 2 cut(s) 178, 264
XceI RCATGY 1 cut(s) 37
ZraI GACGTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.