Rh1AG044500

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0002239
Physical Location & Seq
Forward (+)
7655004 .. 7659635
4632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG044500.1

Sequence Viewer

Length: 360 bp
ATGGGAGGAAACAACAGACACAAGAAATCTTCTTTCTCATTCTTCAGCTTCTTCAAGTCTCGGAGGCCTCACCGAGGAGAAGAGATAGAGGATTCATATTTGAGTGCAACAAAGGTGTGGCCTAGTGTGGAGGATAGAGGTCGATGGGTAGCTGAGCCTGGAATTGACAACAAAGCTGCTGATTTCATTGGCAGAATCCACAAGAACATGGTCTGGGAGTCGGATTGCAAAACCTTAACTGATGGGGGACTGATGAGAAGGCCATCATCTGCTTACCGGATCATAGAAATGCAGCTCAAAGAAAAGAAATCAGGGTCGTTTATAAGCAACTTTATCAAGAAGATATTATCAATGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

119

Amino Acids

13.72

Weight (kDa)

9.88

Isoelectric Point (pI)

57.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 323
AclWI GGATC 1 cut(s) 287
AcuI CTGAAG 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 74
AgsI TTSAA 1 cut(s) 55
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 4 cut(s) 48, 152, 176, 295
AluI AGCT 4 cut(s) 48, 152, 176, 295
Alw26I GTCTC 1 cut(s) 63
AlwI GGATC 1 cut(s) 287
AoxI GGCC 3 cut(s) 65, 119, 260
ApeKI GCWGC 2 cut(s) 176, 292
AsuHPI GGTGA 1 cut(s) 62
BbvI GCAGC 2 cut(s) 163, 304
BccI CCATC 3 cut(s) 138, 236, 271
BciT130I CCWGG 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 63
BfaI CTAG 1 cut(s) 123
BisI GCNGC 2 cut(s) 177, 293
BlpI GCTNAGC 1 cut(s) 153
BlsI GCNGC 2 cut(s) 178, 294
Bme1390I CCNGG 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 159
Bpu1102I GCTNAGC 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 73
BsaWI WCCGGW 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 74
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 73
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMII CTCAG 1 cut(s) 144
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 2 cut(s) 163, 304
BshFI GGCC 3 cut(s) 67, 121, 262
BsiSI CCGG 1 cut(s) 277
BslFI GGGAC 1 cut(s) 261
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 261
BsnI GGCC 3 cut(s) 67, 121, 262
Bsp143I GATC 1 cut(s) 279
Bsp1720I GCTNAGC 1 cut(s) 153
BspANI GGCC 3 cut(s) 67, 121, 262
BspCNI CTCAG 1 cut(s) 145
BspPI GGATC 1 cut(s) 287
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 1 cut(s) 279
Bst2UI CCWGG 1 cut(s) 159
Bst6I CTCTTC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 153
BstENI CCTNNNNNAGG 1 cut(s) 72
BstKTI GATC 1 cut(s) 282
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 1 cut(s) 279
BstNI CCWGG 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 157
BstV1I GCAGC 2 cut(s) 163, 304
BsuRI GGCC 3 cut(s) 67, 121, 262
CviAII CATG 1 cut(s) 208
CviJI RGCY 8 cut(s) 48, 67, 121, 152, 157, 176, 262, 295
CviKI_1 RGCY 8 cut(s) 48, 67, 121, 152, 157, 176, 262, 295
DdeI CTNAG 1 cut(s) 153
DpnI GATC 1 cut(s) 281
DpnII GATC 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco147I AGGCCT 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 28
EcoNI CCTNNNNNAGG 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 157
FaeI CATG 1 cut(s) 211
FaiI YATR 4 cut(s) 97, 209, 284, 323
FaqI GGGAC 1 cut(s) 261
FatI CATG 1 cut(s) 207
Fnu4HI GCNGC 2 cut(s) 177, 293
Fsp4HI GCNGC 2 cut(s) 177, 293
FspBI CTAG 1 cut(s) 123
GluI GCNGC 2 cut(s) 177, 293
HaeIII GGCC 3 cut(s) 67, 121, 262
HapII CCGG 1 cut(s) 277
Hin1II CATG 1 cut(s) 211
HinfI GANTC 3 cut(s) 92, 195, 218
HpaII CCGG 1 cut(s) 277
HphI GGTGA 1 cut(s) 62
Hpy188I TCNGA 2 cut(s) 63, 223
Hpy188III TCNNGA 1 cut(s) 337
HpyAV CCTTC 1 cut(s) 252
HpyCH4V TGCA 3 cut(s) 107, 228, 292
HpyF3I CTNAG 1 cut(s) 153
Hsp92II CATG 1 cut(s) 211
Kzo9I GATC 1 cut(s) 279
LpnPI CCDG 5 cut(s) 144, 171, 199, 290, 297
Lsp1109I GCAGC 2 cut(s) 163, 304
MaeI CTAG 1 cut(s) 123
MalI GATC 1 cut(s) 281
MboI GATC 1 cut(s) 279
MboII GAAGA 5 cut(s) 21, 34, 43, 92, 352
MluCI AATT 1 cut(s) 162
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 6 cut(s) 57, 68, 78, 82, 124, 131
MseI TTAA 1 cut(s) 236
MslI CAYNNNNRTG 1 cut(s) 287
MspI CCGG 1 cut(s) 277
MspR9I CCNGG 1 cut(s) 159
MvaI CCWGG 1 cut(s) 159
NdeII GATC 1 cut(s) 279
NlaIII CATG 1 cut(s) 211
PceI AGGCCT 1 cut(s) 67
PfeI GAWTC 2 cut(s) 92, 195
PkrI GCNGC 2 cut(s) 178, 294
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
PsiI TTATAA 1 cut(s) 323
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 287
SaqAI TTAA 1 cut(s) 236
SatI GCNGC 2 cut(s) 177, 293
Sau3AI GATC 1 cut(s) 279
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 159
SetI ASST 7 cut(s) 50, 117, 142, 154, 178, 236, 297
SmiMI CAYNNNNRTG 1 cut(s) 287
Sse9I AATT 1 cut(s) 162
SseBI AGGCCT 1 cut(s) 67
SspMI CTAG 1 cut(s) 123
StuI AGGCCT 1 cut(s) 67
StyD4I CCNGG 1 cut(s) 157
TaqI TCGA 1 cut(s) 142
TasI AATT 1 cut(s) 162
TfiI GAWTC 2 cut(s) 92, 195
Tru1I TTAA 1 cut(s) 236
Tru9I TTAA 1 cut(s) 236
TseI GCWGC 2 cut(s) 176, 292
TspDTI ATGAA 2 cut(s) 84, 175
XagI CCTNNNNNAGG 1 cut(s) 72
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.