pycom04g16470

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0002239
Physical Location & Seq
Reverse (-)
19171425 .. 19171700
276 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g16470.1

Sequence Viewer

Length: 276 bp
ATGTTTACGTGCCGAAAAAGAGTTACGGCAGGCAACAGGCAGAAGAAGTCCTCCATCTCATGCTTCAGCATGTTCAAATGGGGGAGGCCACGCGATCGCAGAGGAGACGACATGATGGAGGATTCCTACATGAGTGAAGGAAGGGTTTGGGCGGGCGATGAGGACAGAGGCGAGTGCGTGGCTGACCCCGGGATTAACAACAAAGCTGCGGCTTTCATAGACAGAATCCGCAAGAAATTTGAAGAAGAAACTGTGAAGCCAGATGGAAAGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

92

Amino Acids

10.46

Weight (kDa)

9.15

Isoelectric Point (pI)

44.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 93
AciI CCGC 3 cut(s) 152, 209, 229
AcsI RAATTY 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 49
AgsI TTSAA 2 cut(s) 76, 242
AluBI AGCT 1 cut(s) 206
AluI AGCT 1 cut(s) 206
Alw26I GTCTC 1 cut(s) 99
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 2 cut(s) 86, 270
ApeKI GCWGC 1 cut(s) 206
ApoI RAATTY 1 cut(s) 236
AsiSI GCGATCGC 1 cut(s) 97
AsuC2I CCSGG 2 cut(s) 189, 190
AvaI CYCGRG 1 cut(s) 188
BbvI GCAGC 1 cut(s) 193
BccI CCATC 3 cut(s) 62, 109, 257
BceAI ACGGC 1 cut(s) 42
BcnI CCSGG 2 cut(s) 189, 190
BcoDI GTCTC 1 cut(s) 99
BisI GCNGC 2 cut(s) 207, 210
BlsI GCNGC 2 cut(s) 208, 211
Bme1390I CCNGG 2 cut(s) 189, 190
BmeT110I CYCGRG 1 cut(s) 188
BmrFI CCNGG 2 cut(s) 189, 190
BpuMI CCSGG 2 cut(s) 189, 190
BsaAI YACGTR 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 187, 188
BseDI CCNNGG 2 cut(s) 187, 188
BseRI GAGGAG 1 cut(s) 117
BseXI GCAGC 1 cut(s) 193
Bsh1236I CGCG 1 cut(s) 93
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 2 cut(s) 88, 272
BsiEI CGRYCG 1 cut(s) 97
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 1 cut(s) 189
BsmAI GTCTC 1 cut(s) 99
BsmBI CGTCTC 1 cut(s) 99
BsnI GGCC 2 cut(s) 88, 272
BsoBI CYCGRG 1 cut(s) 188
Bsp143I GATC 1 cut(s) 94
BspACI CCGC 3 cut(s) 152, 209, 229
BspANI GGCC 2 cut(s) 88, 272
BspFNI CGCG 1 cut(s) 93
BssECI CCNNGG 2 cut(s) 187, 188
BssMI GATC 1 cut(s) 94
Bst4CI ACNGT 1 cut(s) 253
BstBAI YACGTR 1 cut(s) 9
BstC8I GCNNGC 2 cut(s) 31, 154
BstFNI CGCG 1 cut(s) 93
BstKTI GATC 1 cut(s) 97
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 1 cut(s) 94
BstMCI CGRYCG 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 2 cut(s) 187, 188
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 193
BsuRI GGCC 2 cut(s) 88, 272
BtgZI GCGATG 1 cut(s) 171
Cac8I GCNNGC 2 cut(s) 31, 154
Cfr9I CCCGGG 1 cut(s) 188
CviAII CATG 4 cut(s) 60, 70, 112, 130
CviJI RGCY 6 cut(s) 88, 182, 206, 212, 259, 272
CviKI_1 RGCY 6 cut(s) 88, 182, 206, 212, 259, 272
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
Eco147I AGGCCT 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 49
Eco88I CYCGRG 1 cut(s) 188
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 4 cut(s) 63, 73, 115, 133
FaiI YATR 5 cut(s) 61, 71, 113, 131, 218
FatI CATG 4 cut(s) 59, 69, 111, 129
FauI CCCGC 1 cut(s) 145
Fnu4HI GCNGC 2 cut(s) 207, 210
Fsp4HI GCNGC 2 cut(s) 207, 210
GluI GCNGC 2 cut(s) 207, 210
HaeIII GGCC 2 cut(s) 88, 272
HapII CCGG 1 cut(s) 189
Hin1II CATG 4 cut(s) 63, 73, 115, 133
HinfI GANTC 2 cut(s) 122, 225
HpaII CCGG 1 cut(s) 189
Hpy166II GTNNAC 1 cut(s) 6
Hpy8I GTNNAC 1 cut(s) 6
HpyAV CCTTC 2 cut(s) 131, 135
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4IV ACGT 1 cut(s) 8
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 4 cut(s) 63, 73, 115, 133
Kzo9I GATC 1 cut(s) 94
LpnPI CCDG 3 cut(s) 15, 22, 202
Lsp1109I GCAGC 1 cut(s) 193
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 22
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 3 cut(s) 55, 254, 257
MluCI AATT 1 cut(s) 236
MnlI CCTC 6 cut(s) 61, 78, 95, 112, 154, 161
MseI TTAA 1 cut(s) 195
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 2 cut(s) 189, 190
MvnI CGCG 1 cut(s) 93
NciI CCSGG 2 cut(s) 189, 190
NdeII GATC 1 cut(s) 94
NlaIII CATG 4 cut(s) 63, 73, 115, 133
NspI RCATGY 1 cut(s) 73
PceI AGGCCT 1 cut(s) 272
PfeI GAWTC 2 cut(s) 122, 225
PkrI GCNGC 2 cut(s) 208, 211
Ple19I CGATCG 1 cut(s) 97
Ppu21I YACGTR 1 cut(s) 9
PvuI CGATCG 1 cut(s) 97
RgaI GCGATCGC 1 cut(s) 97
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 2 cut(s) 207, 210
Sau3AI GATC 1 cut(s) 94
ScrFI CCNGG 2 cut(s) 189, 190
SetI ASST 2 cut(s) 11, 208
SfaAI GCGATCGC 1 cut(s) 97
SgfI GCGATCGC 1 cut(s) 97
SmaI CCCGGG 1 cut(s) 190
Sse9I AATT 1 cut(s) 236
SseBI AGGCCT 1 cut(s) 272
SsiI CCGC 3 cut(s) 152, 209, 229
StuI AGGCCT 1 cut(s) 272
StyD4I CCNGG 2 cut(s) 187, 188
TaaI ACNGT 1 cut(s) 253
TaiI ACGT 1 cut(s) 11
TasI AATT 1 cut(s) 236
TauI GCSGC 1 cut(s) 212
TfiI GAWTC 2 cut(s) 122, 225
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseI GCWGC 1 cut(s) 206
TspDTI ATGAA 1 cut(s) 205
TspMI CCCGGG 1 cut(s) 188
XapI RAATTY 1 cut(s) 236
XceI RCATGY 1 cut(s) 73
XmaI CCCGGG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.