Encoded by
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G05858 AT5G26620 |
| fragaria_vesca | FvH4_4g21750 FvH4_6g08530 |
| malus_domestica | MD04G1186400.v1.1 MD13G1137300.v1.1 MD13G1137400.v1.1 MD16G1133300.v1.1 |
| prunus_persica | Prupe.1G207900_v2.0.a1 Prupe.4G278700_v2.0.a1 Prupe.6G304200_v2.0.a1 Prupe.6G304300_v2.0.a1 |
| pyrus_communis | pycom04g16470 pycom12g18640 |
| rosa_chinensis | RchiOBHm_Chr1g0321401 RchiOBHm_Chr3g0458591 RchiOBHm_Chr4g0427981 |
| rosa_multiflora | Rmu_co8422555.1_g000001 Rmu_sc0000066.1_g000008 Rmu_sc0000724.1_g000012 Rmu_sc0001634.1_g000005 Rmu_sc0004404.1_g000003 |
| rosa_roxburghii | Rroxscaffold_160G00434010 Rroxscaffold_4G00327780 Rroxscaffold_5G00369640 Rroxscaffold_6G00420960 |
| rosa_rugosa | Rorug03G0030000 Rorug04G0220800 |
| rosa_samantha | Rh1AG044500 Rh1BG042400 Rh3AG088300 Rh3BG091200 Rh3CG091400 Rh3DG092200 Rh4AG278200 Rh4AG423300 Rh4BG283700 Rh4BG435300 Rh4CG299400 Rh4DG281000 Rh4DG431600 |
| rosa_wichuraiana | Rw3G007540 Rw4G024180 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 144 |
| AcuI | CTGAAG | 1 cut(s) | 28 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 74 |
| AgsI | TTSAA | 2 cut(s) | 55, 100 |
| AluBI | AGCT | 3 cut(s) | 48, 155, 179 |
| AluI | AGCT | 3 cut(s) | 48, 155, 179 |
| Alw26I | GTCTC | 1 cut(s) | 220 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 224 |
| AoxI | GGCC | 2 cut(s) | 65, 122 |
| AsuC2I | CCSGG | 1 cut(s) | 162 |
| BanII | GRGCYC | 1 cut(s) | 162 |
| BcnI | CCSGG | 1 cut(s) | 162 |
| BcoDI | GTCTC | 1 cut(s) | 220 |
| BfaI | CTAG | 1 cut(s) | 126 |
| BlpI | GCTNAGC | 1 cut(s) | 156 |
| Bme1390I | CCNGG | 1 cut(s) | 162 |
| BmrFI | CCNGG | 1 cut(s) | 162 |
| BmsI | GCATC | 1 cut(s) | 174 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 52, 84 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 156 |
| BpuMI | CCSGG | 1 cut(s) | 162 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 74 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 74 |
| BseMII | CTCAG | 2 cut(s) | 147, 231 |
| BseRI | GAGGAG | 3 cut(s) | 76, 90, 146 |
| BshFI | GGCC | 2 cut(s) | 67, 124 |
| BsiSI | CCGG | 1 cut(s) | 162 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 74 |
| BsmAI | GTCTC | 1 cut(s) | 220 |
| BsnI | GGCC | 2 cut(s) | 67, 124 |
| Bsp1286I | GDGCHC | 1 cut(s) | 162 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 156 |
| BspACI | CCGC | 1 cut(s) | 144 |
| BspANI | GGCC | 2 cut(s) | 67, 124 |
| BspCNI | CTCAG | 2 cut(s) | 148, 230 |
| Bst4CI | ACNGT | 1 cut(s) | 244 |
| BstDEI | CTNAG | 2 cut(s) | 156, 217 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 72 |
| BstMAI | GTCTC | 1 cut(s) | 220 |
| BstSCI | CCNGG | 1 cut(s) | 160 |
| BsuRI | GGCC | 2 cut(s) | 67, 124 |
| CaiI | CAGNNNCTG | 1 cut(s) | 224 |
| CviAII | CATG | 1 cut(s) | 85 |
| CviJI | RGCY | 6 cut(s) | 48, 67, 124, 155, 160, 179 |
| CviKI_1 | RGCY | 6 cut(s) | 48, 67, 124, 155, 160, 179 |
| DdeI | CTNAG | 2 cut(s) | 156, 217 |
| Eco147I | AGGCCT | 1 cut(s) | 67 |
| Eco24I | GRGCYC | 1 cut(s) | 162 |
| Eco57I | CTGAAG | 1 cut(s) | 28 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 72 |
| EcoT38I | GRGCYC | 1 cut(s) | 162 |
| FaeI | CATG | 1 cut(s) | 88 |
| FaiI | YATR | 2 cut(s) | 86, 104 |
| FatI | CATG | 1 cut(s) | 84 |
| FauI | CCCGC | 1 cut(s) | 137 |
| FriOI | GRGCYC | 1 cut(s) | 162 |
| FspBI | CTAG | 1 cut(s) | 126 |
| HaeIII | GGCC | 2 cut(s) | 67, 124 |
| HapII | CCGG | 1 cut(s) | 162 |
| Hin1II | CATG | 1 cut(s) | 88 |
| HinfI | GANTC | 2 cut(s) | 198, 221 |
| HpaII | CCGG | 1 cut(s) | 162 |
| Hpy166II | GTNNAC | 1 cut(s) | 247 |
| Hpy188I | TCNGA | 2 cut(s) | 220, 226 |
| Hpy8I | GTNNAC | 1 cut(s) | 247 |
| HpyAV | CCTTC | 1 cut(s) | 43 |
| HpyCH4III | ACNGT | 1 cut(s) | 244 |
| HpyCH4V | TGCA | 1 cut(s) | 110 |
| HpyF3I | CTNAG | 2 cut(s) | 156, 217 |
| Hsp92II | CATG | 1 cut(s) | 88 |
| LpnPI | CCDG | 2 cut(s) | 175, 240 |
| LweI | GCATC | 1 cut(s) | 174 |
| MaeI | CTAG | 1 cut(s) | 126 |
| MboII | GAAGA | 1 cut(s) | 34 |
| MhlI | GDGCHC | 1 cut(s) | 162 |
| MnlI | CCTC | 9 cut(s) | 40, 54, 57, 68, 78, 85, 124, 127, 134 |
| MseI | TTAA | 1 cut(s) | 239 |
| MspI | CCGG | 1 cut(s) | 162 |
| MspR9I | CCNGG | 1 cut(s) | 162 |
| NciI | CCSGG | 1 cut(s) | 162 |
| NlaIII | CATG | 1 cut(s) | 88 |
| PceI | AGGCCT | 1 cut(s) | 67 |
| PfeI | GAWTC | 2 cut(s) | 198, 221 |
| PstNI | CAGNNNCTG | 1 cut(s) | 224 |
| SaqAI | TTAA | 1 cut(s) | 239 |
| ScrFI | CCNGG | 1 cut(s) | 162 |
| SduI | GDGCHC | 1 cut(s) | 162 |
| SetI | ASST | 5 cut(s) | 50, 120, 157, 181, 239 |
| SfaNI | GCATC | 1 cut(s) | 174 |
| SseBI | AGGCCT | 1 cut(s) | 67 |
| SsiI | CCGC | 1 cut(s) | 144 |
| SspMI | CTAG | 1 cut(s) | 126 |
| StuI | AGGCCT | 1 cut(s) | 67 |
| StyD4I | CCNGG | 1 cut(s) | 160 |
| TaaI | ACNGT | 1 cut(s) | 244 |
| TaqI | TCGA | 2 cut(s) | 59, 168 |
| TfiI | GAWTC | 2 cut(s) | 198, 221 |
| Tru1I | TTAA | 1 cut(s) | 239 |
| Tru9I | TTAA | 1 cut(s) | 239 |
| TspDTI | ATGAA | 1 cut(s) | 178 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 72 |
| XspI | CTAG | 1 cut(s) | 126 |