Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002239

Physical Location & Seq

Genomic Coordinates Forward (+)

22207692 .. 22208427

Gene Structure 736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G207900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGGAAAGTCCTCTTCAATCTTCTCCTTCTGCAACATATTCAAGGCCTGCTTTTCTAGCAGCAACAGAGACGATACCTACTCTGACGACGGTGGTGTTTATGTTAGAAGAAGAATATGTCCAAGCGATGAAGACAGAGGAGGTTGGACTGCTGAGCCTGGCATCGACGGCAAAGCCTCTGACTTCATTACCAGATTCTACGCTAGTCATGTTTCCGATCCCGAGTGCCAAACCTTTGCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

82

Amino Acids

8.96

Weight (kDa)

4.86

Isoelectric Point (pI)

61.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05858 AT5G26620
fragaria_vesca	FvH4_4g21750 FvH4_6g08530
malus_domestica	MD04G1186400.v1.1 MD13G1137300.v1.1 MD13G1137400.v1.1 MD16G1133300.v1.1
prunus_persica	Prupe.1G207900_v2.0.a1 Prupe.4G278700_v2.0.a1 Prupe.6G304200_v2.0.a1 Prupe.6G304300_v2.0.a1
pyrus_communis	pycom04g16470 pycom12g18640
rosa_chinensis	RchiOBHm_Chr1g0321401 RchiOBHm_Chr3g0458591 RchiOBHm_Chr4g0427981
rosa_multiflora	Rmu_co8422555.1_g000001 Rmu_sc0000066.1_g000008 Rmu_sc0000724.1_g000012 Rmu_sc0001634.1_g000005 Rmu_sc0004404.1_g000003
rosa_roxburghii	Rroxscaffold_160G00434010 Rroxscaffold_4G00327780 Rroxscaffold_5G00369640 Rroxscaffold_6G00420960
rosa_rugosa	Rorug03G0030000 Rorug04G0220800
rosa_samantha	Rh1AG044500 Rh1BG042400 Rh3AG088300 Rh3BG091200 Rh3CG091400 Rh3DG092200 Rh4AG278200 Rh4AG423300 Rh4BG283700 Rh4BG435300 Rh4CG299400 Rh4DG281000 Rh4DG431600
rosa_wichuraiana	Rw3G007540 Rw4G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	212
AgsI	TTSAA	2 cut(s)	18, 43
AjnI	CCWGG	1 cut(s)	157
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	1 cut(s)	212
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	60
AvaI	CYCGRG	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	72
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	2 cut(s)	57, 204
BisI	GCNGC	1 cut(s)	61
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	62
Bme1390I	CCNGG	1 cut(s)	159
BmeT110I	CYCGRG	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	159
BmsI	GCATC	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	138
Bpu1102I	GCTNAGC	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	144
BseRI	GAGGAG	1 cut(s)	153
BseXI	GCAGC	1 cut(s)	72
BshFI	GGCC	1 cut(s)	47
BsiHKCI	CYCGRG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	63
BsmBI	CGTCTC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	47
BsoBI	CYCGRG	1 cut(s)	221
Bsp143I	GATC	1 cut(s)	217
Bsp1720I	GCTNAGC	1 cut(s)	153
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	145
BspPI	GGATC	1 cut(s)	212
BssMI	GATC	1 cut(s)	217
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	92
Bst6I	CTCTTC	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	153
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 168
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	72
BstV2I	GAAGAC	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	47
BtgZI	GCGATG	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	49
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	3 cut(s)	47, 157, 176
CviKI_1	RGCY	3 cut(s)	47, 157, 176
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	19
EarI	CTCTTC	1 cut(s)	19
Eco147I	AGGCCT	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	157
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	1 cut(s)	212
FaiI	YATR	4 cut(s)	38, 102, 118, 210
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FatI	CATG	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	61
Fsp4HI	GCNGC	1 cut(s)	61
FspBI	CTAG	2 cut(s)	57, 204
GluI	GCNGC	1 cut(s)	61
HaeIII	GGCC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	212
HinfI	GANTC	1 cut(s)	195
Hpy188I	TCNGA	3 cut(s)	85, 181, 217
Hpy188III	TCNNGA	1 cut(s)	221
Hpy99I	CGWCG	2 cut(s)	92, 170
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4V	TGCA	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 168
HpyF3I	CTNAG	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	212
Kzo9I	GATC	1 cut(s)	217
LpnPI	CCDG	4 cut(s)	61, 144, 171, 205
Lsp1109I	GCAGC	1 cut(s)	72
LweI	GCATC	1 cut(s)	171
MaeI	CTAG	2 cut(s)	57, 204
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	5 cut(s)	6, 13, 120, 123, 143
MmeI	TCCRAC	1 cut(s)	125
MnlI	CCTC	4 cut(s)	22, 131, 134, 187
MspR9I	CCNGG	1 cut(s)	159
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	57, 168
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	1 cut(s)	212
PceI	AGGCCT	1 cut(s)	47
PfeI	GAWTC	1 cut(s)	195
PkrI	GCNGC	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
SatI	GCNGC	1 cut(s)	61
Sau3AI	GATC	1 cut(s)	217
ScrFI	CCNGG	1 cut(s)	159
SetI	ASST	3 cut(s)	80, 145, 236
SfaNI	GCATC	1 cut(s)	171
SseBI	AGGCCT	1 cut(s)	47
SspMI	CTAG	2 cut(s)	57, 204
StuI	AGGCCT	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	157
TaaI	ACNGT	1 cut(s)	92
TaqI	TCGA	1 cut(s)	165
TfiI	GAWTC	1 cut(s)	195
TseI	GCWGC	1 cut(s)	60
TspDTI	ATGAA	2 cut(s)	144, 175
XspI	CTAG	2 cut(s)	57, 204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.