FvH4_6g08530

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002239
Physical Location & Seq
Forward (+)
5045422 .. 5046137
716 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08530.t1

Sequence Viewer

Length: 267 bp
ATGGGAGGAAACAAGAGACAGAAGAAATCTTCTTTCTCATTCTTCAGCCTCTTCAAGTCTCGGAGGCCTCGCAGAGGTGATGACATAGAGGATTCATATTTGAGTGCAAGAAGGGTGTGGCCTAGCGAGGAGGATAGAGATCGATGGGTAGCTGAGCCTGGAATTGACAACAAAGCTGCTGCTTTCATTGACAGAATCCACAAGAACATAGTCTCAGAAGCGGATTGCCAAACCTTAACTGTAAACCCAGCAGCAGGAAAGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

89

Amino Acids

10.0

Weight (kDa)

9.57

Isoelectric Point (pI)

77.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 221
AcuI CTGAAG 1 cut(s) 28
AfiI CCNNNNNNNGG 2 cut(s) 74, 254
AgsI TTSAA 1 cut(s) 55
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 2 cut(s) 152, 176
AluI AGCT 2 cut(s) 152, 176
Alw26I GTCTC 3 cut(s) 10, 63, 217
AoxI GGCC 3 cut(s) 65, 119, 261
ApeKI GCWGC 3 cut(s) 176, 179, 251
AsuHPI GGTGA 1 cut(s) 89
BbvI GCAGC 3 cut(s) 163, 166, 263
BccI CCATC 1 cut(s) 138
BciT130I CCWGG 1 cut(s) 159
BcoDI GTCTC 3 cut(s) 10, 63, 217
BfaI CTAG 2 cut(s) 123, 265
BisI GCNGC 3 cut(s) 177, 180, 252
BlpI GCTNAGC 1 cut(s) 153
BlsI GCNGC 3 cut(s) 178, 181, 253
Bme1390I CCNGG 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 159
Bpu1102I GCTNAGC 1 cut(s) 153
Bsa29I ATCGAT 1 cut(s) 142
BsaBI GATNNNNATC 1 cut(s) 138
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 254
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 1 cut(s) 159
BseCI ATCGAT 1 cut(s) 142
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 2 cut(s) 74, 254
BseMII CTCAG 2 cut(s) 144, 228
BseRI GAGGAG 1 cut(s) 143
BseXI GCAGC 3 cut(s) 163, 166, 263
BseYI CCCAGC 1 cut(s) 247
BshFI GGCC 3 cut(s) 67, 121, 263
BshVI ATCGAT 1 cut(s) 142
BslI CCNNNNNNNGG 2 cut(s) 74, 254
BsmAI GTCTC 3 cut(s) 10, 63, 217
BsnI GGCC 3 cut(s) 67, 121, 263
Bsp143I GATC 1 cut(s) 139
Bsp1720I GCTNAGC 1 cut(s) 153
BspACI CCGC 1 cut(s) 221
BspANI GGCC 3 cut(s) 67, 121, 263
BspCNI CTCAG 2 cut(s) 145, 227
BspDI ATCGAT 1 cut(s) 142
BssMI GATC 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 1 cut(s) 56
BstDEI CTNAG 2 cut(s) 153, 214
BstENI CCTNNNNNAGG 1 cut(s) 72
BstKTI GATC 1 cut(s) 142
BstMAI GTCTC 3 cut(s) 10, 63, 217
BstMBI GATC 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 260
BstNI CCWGG 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 157
BstV1I GCAGC 3 cut(s) 163, 166, 263
Bsu15I ATCGAT 1 cut(s) 142
BsuRI GGCC 3 cut(s) 67, 121, 263
BsuTUI ATCGAT 1 cut(s) 142
ClaI ATCGAT 1 cut(s) 142
CviJI RGCY 7 cut(s) 48, 67, 121, 152, 157, 176, 263
CviKI_1 RGCY 7 cut(s) 48, 67, 121, 152, 157, 176, 263
DdeI CTNAG 2 cut(s) 153, 214
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco147I AGGCCT 2 cut(s) 67, 263
Eco57I CTGAAG 1 cut(s) 28
EcoNI CCTNNNNNAGG 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 157
FaiI YATR 3 cut(s) 86, 97, 209
Fnu4HI GCNGC 3 cut(s) 177, 180, 252
Fsp4HI GCNGC 3 cut(s) 177, 180, 252
FspBI CTAG 2 cut(s) 123, 265
GluI GCNGC 3 cut(s) 177, 180, 252
GsaI CCCAGC 1 cut(s) 251
HaeIII GGCC 3 cut(s) 67, 121, 263
HinfI GANTC 2 cut(s) 92, 195
HphI GGTGA 1 cut(s) 89
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 2 cut(s) 63, 217
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 105
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4V TGCA 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 1 cut(s) 260
HpyF3I CTNAG 2 cut(s) 153, 214
Kzo9I GATC 1 cut(s) 139
LpnPI CCDG 4 cut(s) 144, 171, 240, 261
Lsp1109I GCAGC 3 cut(s) 163, 166, 263
MaeI CTAG 2 cut(s) 123, 265
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 4 cut(s) 21, 34, 34, 43
MluCI AATT 1 cut(s) 162
MnlI CCTC 7 cut(s) 57, 59, 68, 78, 82, 121, 124
MseI TTAA 1 cut(s) 236
MspR9I CCNGG 1 cut(s) 159
MvaI CCWGG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 260
NdeII GATC 1 cut(s) 139
PceI AGGCCT 2 cut(s) 67, 263
PfeI GAWTC 2 cut(s) 92, 195
PkrI GCNGC 3 cut(s) 178, 181, 253
Psp6I CCWGG 1 cut(s) 157
PspFI CCCAGC 1 cut(s) 247
PspGI CCWGG 1 cut(s) 157
SaqAI TTAA 1 cut(s) 236
SatI GCNGC 3 cut(s) 177, 180, 252
Sau3AI GATC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 159
SetI ASST 4 cut(s) 79, 154, 178, 236
Sse9I AATT 1 cut(s) 162
SseBI AGGCCT 2 cut(s) 67, 263
SsiI CCGC 1 cut(s) 221
SspMI CTAG 2 cut(s) 123, 265
StuI AGGCCT 2 cut(s) 67, 263
StyD4I CCNGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 241
TaqI TCGA 1 cut(s) 142
TasI AATT 1 cut(s) 162
TfiI GAWTC 2 cut(s) 92, 195
Tru1I TTAA 1 cut(s) 236
Tru9I TTAA 1 cut(s) 236
TseI GCWGC 3 cut(s) 176, 179, 251
TspDTI ATGAA 2 cut(s) 84, 175
XagI CCTNNNNNAGG 1 cut(s) 72
XspI CTAG 2 cut(s) 123, 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.