Rh4AG278200

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002239
Physical Location & Seq
Forward (+)
59424288 .. 59443000
18713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG278200.1

Sequence Viewer

Length: 246 bp
ATGGGAAAGACGTCGTTGTTCTCCTTCTGCAACATGTTCAAGGCCTGCTTTTCTGGTGGAAGCCGGGACGACACTTACTCTGATGATGGTGGTGTTTATAGAAGAAGAATATGTCCGAGCGATGAGGACAGAGGCGGTTGGACTGCTGAGCCTGGGATCGACCGCAAGGCCACTGCTTTCATTGCAAGGTTCTACGAGAGTCACGTTTCGGATGCTGAGTACCATGCTTTAGGGGATGATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

81

Amino Acids

9.01

Weight (kDa)

4.94

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 14
AciI CCGC 2 cut(s) 135, 163
AclWI GGATC 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 11
AfaI GTAC 1 cut(s) 221
AflIII ACRYGT 1 cut(s) 33
AgsI TTSAA 1 cut(s) 40
AjnI CCWGG 1 cut(s) 151
AlwI GGATC 1 cut(s) 164
AoxI GGCC 2 cut(s) 42, 168
AsuC2I CCSGG 1 cut(s) 65
BccI CCATC 1 cut(s) 80
BciT130I CCWGG 1 cut(s) 153
BcnI CCSGG 1 cut(s) 65
BlpI GCTNAGC 1 cut(s) 147
Bme1390I CCNGG 2 cut(s) 65, 153
BmrFI CCNGG 2 cut(s) 65, 153
BmsI GCATC 1 cut(s) 202
Bpu1102I GCTNAGC 1 cut(s) 147
BpuMI CCSGG 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 11
BsaJI CCNNGG 1 cut(s) 152
Bse3DI GCAATG 1 cut(s) 180
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 152
BseGI GGATG 2 cut(s) 217, 241
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 2 cut(s) 138, 207
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 2 cut(s) 44, 170
BsiEI CGRYCG 1 cut(s) 163
BsiSI CCGG 1 cut(s) 64
BslFI GGGAC 1 cut(s) 80
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 2 cut(s) 44, 170
Bsp143I GATC 1 cut(s) 156
Bsp1720I GCTNAGC 1 cut(s) 147
BspACI CCGC 2 cut(s) 135, 163
BspANI GGCC 2 cut(s) 44, 170
BspCNI CTCAG 2 cut(s) 139, 208
BspPI GGATC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 152
BssMI GATC 1 cut(s) 156
BssNI GRCGYC 1 cut(s) 11
Bst2UI CCWGG 1 cut(s) 153
BstACI GRCGYC 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 2 cut(s) 147, 216
BstF5I GGATG 2 cut(s) 217, 241
BstKTI GATC 1 cut(s) 159
BstMBI GATC 1 cut(s) 156
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 37
BstSCI CCNGG 2 cut(s) 63, 151
BsuRI GGCC 2 cut(s) 44, 170
BtgZI GCGATG 1 cut(s) 135
BtsCI GGATG 2 cut(s) 217, 241
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 220
CviAII CATG 2 cut(s) 34, 224
CviJI RGCY 4 cut(s) 44, 63, 151, 170
CviKI_1 RGCY 4 cut(s) 44, 63, 151, 170
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 2 cut(s) 147, 216
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
Eco147I AGGCCT 1 cut(s) 44
EcoRII CCWGG 1 cut(s) 151
FaeI CATG 2 cut(s) 37, 227
FaiI YATR 4 cut(s) 35, 99, 112, 225
FalI AAGNNNNNCTT 2 cut(s) 32, 64
FaqI GGGAC 1 cut(s) 80
FatI CATG 2 cut(s) 33, 223
FokI GGATG 1 cut(s) 224
HaeIII GGCC 2 cut(s) 44, 170
HapII CCGG 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 11
Hin1II CATG 2 cut(s) 37, 227
HinfI GANTC 1 cut(s) 199
HpaII CCGG 1 cut(s) 64
Hpy188I TCNGA 4 cut(s) 82, 117, 211, 245
Hpy99I CGWCG 1 cut(s) 16
HpyAV CCTTC 1 cut(s) 34
HpyCH4IV ACGT 2 cut(s) 11, 204
HpyCH4V TGCA 2 cut(s) 30, 185
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 2 cut(s) 147, 216
HpySE526I ACGT 2 cut(s) 11, 204
Hsp92I GRCGYC 1 cut(s) 11
Hsp92II CATG 2 cut(s) 37, 227
Kzo9I GATC 1 cut(s) 156
LpnPI CCDG 5 cut(s) 39, 58, 77, 138, 165
LweI GCATC 1 cut(s) 202
MaeII ACGT 2 cut(s) 11, 204
MaeIII GTNAC 1 cut(s) 200
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MboII GAAGA 2 cut(s) 114, 117
MlyI GAGTC 1 cut(s) 208
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 2 cut(s) 118, 125
MspI CCGG 1 cut(s) 64
MspR9I CCNGG 2 cut(s) 65, 153
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 182
NciI CCSGG 1 cut(s) 65
NdeII GATC 1 cut(s) 156
NlaIII CATG 2 cut(s) 37, 227
NmuCI GTSAC 1 cut(s) 200
NspI RCATGY 1 cut(s) 37
PceI AGGCCT 1 cut(s) 44
PciI ACATGT 1 cut(s) 33
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PleI GAGTC 1 cut(s) 207
PpsI GAGTC 1 cut(s) 207
PscI ACATGT 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
Sau3AI GATC 1 cut(s) 156
SchI GAGTC 1 cut(s) 208
ScrFI CCNGG 2 cut(s) 65, 153
SetI ASST 3 cut(s) 14, 191, 207
SfaNI GCATC 1 cut(s) 202
SseBI AGGCCT 1 cut(s) 44
SsiI CCGC 2 cut(s) 135, 163
StuI AGGCCT 1 cut(s) 44
StyD4I CCNGG 2 cut(s) 63, 151
TaiI ACGT 2 cut(s) 14, 207
TaqI TCGA 1 cut(s) 159
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 1 cut(s) 200
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 169
TspRI CASTG 1 cut(s) 178
XceI RCATGY 1 cut(s) 37
ZraI GACGTC 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.