Rw3G007540

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0002239
Physical Location & Seq
Forward (+)
6942823 .. 6943360
538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G007540.1

Sequence Viewer

Length: 276 bp
ATGGGAGGAAACAACAGACAGAAGAAATCTTCTCTCTCATTCTTCAGCTTCTTCAAGTCTCGGAGGCCTCGCCGAGGAGAAGAGATAGAGGATTCGTATTTGAGTGCAAGAAGGGTGTGGCCCAGTGTGGAGGATAGAGGCGGTCGATGGGTAGCTGAGCCTGGCATTGACAACAAAGCTGCTGATTTCATTGACAGAATCCACAAGAACATGGCCATGGTCTCGGAATCGGATTGCAAAACCTTAACTGTAAACCCAGCAGCAGGACAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF761

Protein Analysis

91

Amino Acids

10.31

Weight (kDa)

9.35

Isoelectric Point (pI)

72.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 141
AcoI YGGCCR 1 cut(s) 213
AcuI CTGAAG 1 cut(s) 28
AfiI CCNNNNNNNGG 2 cut(s) 74, 263
AgsI TTSAA 1 cut(s) 55
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 3 cut(s) 48, 155, 179
AluI AGCT 3 cut(s) 48, 155, 179
Alw26I GTCTC 2 cut(s) 63, 226
AoxI GGCC 3 cut(s) 65, 119, 213
ApeKI GCWGC 2 cut(s) 179, 260
AspS9I GGNCC 1 cut(s) 120
BalI TGGCCA 1 cut(s) 215
BbvI GCAGC 2 cut(s) 166, 272
BccI CCATC 1 cut(s) 141
BciT130I CCWGG 1 cut(s) 162
BcoDI GTCTC 2 cut(s) 63, 226
BfaI CTAG 1 cut(s) 274
BisI GCNGC 2 cut(s) 180, 261
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 2 cut(s) 181, 262
Bme1390I CCNGG 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 162
BmrI ACTGGG 1 cut(s) 117
BmuI ACTGGG 1 cut(s) 117
Bpu1102I GCTNAGC 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 226
BsaJI CCNNGG 2 cut(s) 73, 216
Bsc4I CCNNNNNNNGG 2 cut(s) 74, 263
Bse1I ACTGG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 2 cut(s) 73, 216
BseLI CCNNNNNNNGG 2 cut(s) 74, 263
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 123
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 2 cut(s) 166, 272
BseYI CCCAGC 1 cut(s) 256
Bsh1285I CGRYCG 1 cut(s) 145
BshFI GGCC 3 cut(s) 67, 121, 215
BsiEI CGRYCG 1 cut(s) 145
BslI CCNNNNNNNGG 2 cut(s) 74, 263
BsmAI GTCTC 2 cut(s) 63, 226
BsnI GGCC 3 cut(s) 67, 121, 215
Bso31I GGTCTC 1 cut(s) 226
Bsp1720I GCTNAGC 1 cut(s) 156
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 1 cut(s) 141
BspANI GGCC 3 cut(s) 67, 121, 215
BspCNI CTCAG 1 cut(s) 148
BspTNI GGTCTC 1 cut(s) 226
BsrI ACTGG 1 cut(s) 123
BssECI CCNNGG 2 cut(s) 73, 216
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 156
BstDSI CCRYGG 1 cut(s) 216
BstENI CCTNNNNNAGG 1 cut(s) 72
BstMAI GTCTC 2 cut(s) 63, 226
BstMCI CGRYCG 1 cut(s) 145
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstV1I GCAGC 2 cut(s) 166, 272
BsuRI GGCC 3 cut(s) 67, 121, 215
BtgI CCRYGG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 120
CviAII CATG 2 cut(s) 211, 217
CviJI RGCY 7 cut(s) 48, 67, 121, 155, 160, 179, 215
CviKI_1 RGCY 7 cut(s) 48, 67, 121, 155, 160, 179, 215
DdeI CTNAG 1 cut(s) 156
EaeI YGGCCR 1 cut(s) 213
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 216
Eco147I AGGCCT 1 cut(s) 67
Eco31I GGTCTC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 28
EcoNI CCTNNNNNAGG 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 2 cut(s) 214, 220
FaiI YATR 2 cut(s) 212, 218
FatI CATG 2 cut(s) 210, 216
Fnu4HI GCNGC 2 cut(s) 180, 261
Fsp4HI GCNGC 2 cut(s) 180, 261
FspBI CTAG 1 cut(s) 274
GluI GCNGC 2 cut(s) 180, 261
GsaI CCCAGC 1 cut(s) 260
HaeIII GGCC 3 cut(s) 67, 121, 215
Hin1II CATG 2 cut(s) 214, 220
HinfI GANTC 3 cut(s) 92, 198, 227
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 3 cut(s) 63, 226, 232
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 105
HpyCH4III ACNGT 1 cut(s) 250
HpyCH4V TGCA 2 cut(s) 107, 237
HpyF3I CTNAG 1 cut(s) 156
Hsp92II CATG 2 cut(s) 214, 220
LpnPI CCDG 6 cut(s) 136, 147, 174, 249, 254, 270
Lsp1109I GCAGC 2 cut(s) 166, 272
MaeI CTAG 1 cut(s) 274
MboII GAAGA 5 cut(s) 21, 34, 34, 43, 92
MlsI TGGCCA 1 cut(s) 215
MluNI TGGCCA 1 cut(s) 215
MnlI CCTC 6 cut(s) 57, 68, 78, 82, 124, 131
Mox20I TGGCCA 1 cut(s) 215
MscI TGGCCA 1 cut(s) 215
MseI TTAA 1 cut(s) 245
MslI CAYNNNNRTG 1 cut(s) 215
Msp20I TGGCCA 1 cut(s) 215
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
NcoI CCATGG 1 cut(s) 216
NlaIII CATG 2 cut(s) 214, 220
NmeAIII GCCGAG 1 cut(s) 98
PceI AGGCCT 1 cut(s) 67
PfeI GAWTC 3 cut(s) 92, 198, 227
PkrI GCNGC 2 cut(s) 181, 262
Psp6I CCWGG 1 cut(s) 160
PspFI CCCAGC 1 cut(s) 256
PspGI CCWGG 1 cut(s) 160
PspPI GGNCC 1 cut(s) 120
RseI CAYNNNNRTG 1 cut(s) 215
SaqAI TTAA 1 cut(s) 245
SatI GCNGC 2 cut(s) 180, 261
Sau96I GGNCC 1 cut(s) 120
ScrFI CCNGG 1 cut(s) 162
SetI ASST 4 cut(s) 50, 157, 181, 245
SmiMI CAYNNNNRTG 1 cut(s) 215
SseBI AGGCCT 1 cut(s) 67
SsiI CCGC 1 cut(s) 141
SspMI CTAG 1 cut(s) 274
StuI AGGCCT 1 cut(s) 67
StyD4I CCNGG 1 cut(s) 160
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 250
TaqI TCGA 1 cut(s) 145
TfiI GAWTC 3 cut(s) 92, 198, 227
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TscAI CASTG 1 cut(s) 130
TseI GCWGC 2 cut(s) 179, 260
TspDTI ATGAA 1 cut(s) 178
TspRI CASTG 1 cut(s) 130
XagI CCTNNNNNAGG 1 cut(s) 72
XspI CTAG 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.