Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002239

Physical Location & Seq

Genomic Coordinates Reverse (-)

10569996 .. 10570295

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1137300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGCACAAAACCTTGCTTGTTATTAAGAAAACTAGAGAAAAAAGAAAGCAGAAGATGGGAAAGCAATCCTCACTCTTCTCTTTCTGCAACATGTTCAAGGCCTGCTTCTCGAGCGGCAGAAGAGACGATGTGTACTCCGATGATGGCGGTGTTTATGTTAGACGGAGAATATGTCCCAGTGATGAAGACAGAGGTGGATGGACAGCCGAGCCTGGCATCGACCGTAAGGCCACTGCTTTCATTTCCAGATTCTACGAGAGTCGTGTTTCGGATCCCGAATGCGAAGCTCTCGCAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

100

Amino Acids

11.35

Weight (kDa)

9.35

Isoelectric Point (pI)

76.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05858 AT5G26620
fragaria_vesca	FvH4_4g21750 FvH4_6g08530
malus_domestica	MD04G1186400.v1.1 MD13G1137300.v1.1 MD13G1137400.v1.1 MD16G1133300.v1.1
prunus_persica	Prupe.1G207900_v2.0.a1 Prupe.4G278700_v2.0.a1 Prupe.6G304200_v2.0.a1 Prupe.6G304300_v2.0.a1
pyrus_communis	pycom04g16470 pycom12g18640
rosa_chinensis	RchiOBHm_Chr1g0321401 RchiOBHm_Chr3g0458591 RchiOBHm_Chr4g0427981
rosa_multiflora	Rmu_co8422555.1_g000001 Rmu_sc0000066.1_g000008 Rmu_sc0000724.1_g000012 Rmu_sc0001634.1_g000005 Rmu_sc0004404.1_g000003
rosa_roxburghii	Rroxscaffold_160G00434010 Rroxscaffold_4G00327780 Rroxscaffold_5G00369640 Rroxscaffold_6G00420960
rosa_rugosa	Rorug03G0030000 Rorug04G0220800
rosa_samantha	Rh1AG044500 Rh1BG042400 Rh3AG088300 Rh3BG091200 Rh3CG091400 Rh3DG092200 Rh4AG278200 Rh4AG423300 Rh4BG283700 Rh4BG435300 Rh4CG299400 Rh4DG281000 Rh4DG431600
rosa_wichuraiana	Rw3G007540 Rw4G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	114
AciI	CCGC	2 cut(s)	114, 147
AclWI	GGATC	2 cut(s)	266, 279
AfaI	GTAC	1 cut(s)	134
AflIII	ACRYGT	1 cut(s)	90
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	211
AluBI	AGCT	1 cut(s)	287
AluI	AGCT	1 cut(s)	287
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	2 cut(s)	266, 279
Ama87I	CYCGRG	1 cut(s)	109
AoxI	GGCC	2 cut(s)	99, 228
AvaI	CYCGRG	1 cut(s)	109
BamHI	GGATCC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	192
BccI	CCATC	3 cut(s)	49, 137, 192
BciT130I	CCWGG	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	33
BisI	GCNGC	1 cut(s)	115
BlsI	GCNGC	1 cut(s)	116
Bme1390I	CCNGG	1 cut(s)	213
BmeT110I	CYCGRG	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	213
BmrI	ACTGGG	1 cut(s)	171
BmsI	GCATC	1 cut(s)	225
BmuI	ACTGGG	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	192
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bse1I	ACTGG	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	213
BseGI	GGATG	1 cut(s)	203
BseNI	ACTGG	1 cut(s)	177
Bsh1285I	CGRYCG	1 cut(s)	223
BshFI	GGCC	2 cut(s)	101, 230
BsiEI	CGRYCG	1 cut(s)	223
BsiHKCI	CYCGRG	1 cut(s)	109
BslFI	GGGAC	1 cut(s)	159
BsmAI	GTCTC	1 cut(s)	117
BsmBI	CGTCTC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	159
BsmI	GAATGC	1 cut(s)	284
BsnI	GGCC	2 cut(s)	101, 230
BsoBI	CYCGRG	1 cut(s)	109
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	2 cut(s)	114, 147
BspANI	GGCC	2 cut(s)	101, 230
BspLI	GGNNCC	1 cut(s)	273
BspPI	GGATC	2 cut(s)	266, 279
BsrBI	CCGCTC	1 cut(s)	114
BsrI	ACTGG	1 cut(s)	177
BssMI	GATC	1 cut(s)	271
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	2 cut(s)	80, 115
BstC8I	GCNNGC	1 cut(s)	103
BstF5I	GGATG	1 cut(s)	203
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	271
BstMCI	CGRYCG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	1 cut(s)	111
BstNI	CCWGG	1 cut(s)	213
BstNSI	RCATGY	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	211
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	101, 230
BtsCI	GGATG	1 cut(s)	203
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	2 cut(s)	184, 231
Cac8I	GCNNGC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	5 cut(s)	101, 206, 211, 230, 287
CviKI_1	RGCY	5 cut(s)	101, 206, 211, 230, 287
CviQI	GTAC	1 cut(s)	133
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
Eam1104I	CTCTTC	2 cut(s)	80, 115
EarI	CTCTTC	2 cut(s)	80, 115
Eco147I	AGGCCT	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	211
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	1 cut(s)	94
FaiI	YATR	3 cut(s)	92, 156, 172
FalI	AAGNNNNNCTT	2 cut(s)	89, 121
FaqI	GGGAC	1 cut(s)	159
FatI	CATG	1 cut(s)	90
Fnu4HI	GCNGC	1 cut(s)	115
FokI	GGATG	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	115
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	101, 230
Hin1II	CATG	1 cut(s)	94
HinfI	GANTC	2 cut(s)	249, 259
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	3 cut(s)	139, 271, 299
Hpy188III	TCNNGA	3 cut(s)	109, 246, 275
Hpy8I	GTNNAC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4V	TGCA	2 cut(s)	4, 87
HpyF10VI	GCNNNNNNNGC	1 cut(s)	111
Hsp92II	CATG	1 cut(s)	94
Kzo9I	GATC	1 cut(s)	271
LpnPI	CCDG	5 cut(s)	115, 190, 198, 225, 259
LweI	GCATC	1 cut(s)	225
MaeI	CTAG	1 cut(s)	33
MalI	GATC	1 cut(s)	273
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	1 cut(s)	271
MboII	GAAGA	4 cut(s)	64, 67, 132, 197
MflI	RGATCY	1 cut(s)	271
MlyI	GAGTC	1 cut(s)	268
MnlI	CCTC	2 cut(s)	79, 185
MseI	TTAA	1 cut(s)	24
MspR9I	CCNGG	1 cut(s)	213
Mva1269I	GAATGC	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	111
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	1 cut(s)	273
NmeAIII	GCCGAG	1 cut(s)	232
NspI	RCATGY	1 cut(s)	94
PaeR7I	CTCGAG	1 cut(s)	109
PceI	AGGCCT	1 cut(s)	101
PciI	ACATGT	1 cut(s)	90
PctI	GAATGC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	249
PkrI	GCNGC	1 cut(s)	116
PleI	GAGTC	1 cut(s)	267
PpsI	GAGTC	1 cut(s)	267
PscI	ACATGT	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	273
PsuI	RGATCY	1 cut(s)	271
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	1 cut(s)	115
Sau3AI	GATC	1 cut(s)	271
SchI	GAGTC	1 cut(s)	268
ScrFI	CCNGG	1 cut(s)	213
SetI	ASST	3 cut(s)	14, 196, 289
SfaNI	GCATC	1 cut(s)	225
Sfr274I	CTCGAG	1 cut(s)	109
SlaI	CTCGAG	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
SseBI	AGGCCT	1 cut(s)	101
SsiI	CCGC	2 cut(s)	114, 147
SspMI	CTAG	1 cut(s)	33
StuI	AGGCCT	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	224
TaqI	TCGA	2 cut(s)	110, 219
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	249
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	2 cut(s)	184, 238
TspDTI	ATGAA	2 cut(s)	198, 229
TspGWI	ACGGA	1 cut(s)	178
TspRI	CASTG	2 cut(s)	184, 238
XceI	RCATGY	1 cut(s)	94
XhoI	CTCGAG	1 cut(s)	109
XspI	CTAG	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.