Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002239

Physical Location & Seq

Genomic Coordinates Reverse (-)

20769556 .. 20769798

Gene Structure 243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g18640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGCAGGCAACAGGCAGAAGAAATCCGCCTTCTCATTCTTCAGTATGTTCAAATCGAGGAGGCCACGCAATCGCAGAGGGGACGACATAATGGAGGATTCCTACATGAGTGCAAGGAGGGTTTGGCCGAGCGAGGAGGACAGAGGTCGGTCGGTGGCTGAGCCCGGGATTGACAACAAAGCTGCTGCTTTCATAGACAGAATCCACAAGAACATTGTCTCAGAATATGATTGTCAACCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

81

Amino Acids

9.32

Weight (kDa)

9.64

Isoelectric Point (pI)

86.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05858 AT5G26620
fragaria_vesca	FvH4_4g21750 FvH4_6g08530
malus_domestica	MD04G1186400.v1.1 MD13G1137300.v1.1 MD13G1137400.v1.1 MD16G1133300.v1.1
prunus_persica	Prupe.1G207900_v2.0.a1 Prupe.4G278700_v2.0.a1 Prupe.6G304200_v2.0.a1 Prupe.6G304300_v2.0.a1
pyrus_communis	pycom04g16470 pycom12g18640
rosa_chinensis	RchiOBHm_Chr1g0321401 RchiOBHm_Chr3g0458591 RchiOBHm_Chr4g0427981
rosa_multiflora	Rmu_co8422555.1_g000001 Rmu_sc0000066.1_g000008 Rmu_sc0000724.1_g000012 Rmu_sc0001634.1_g000005 Rmu_sc0004404.1_g000003
rosa_roxburghii	Rroxscaffold_160G00434010 Rroxscaffold_4G00327780 Rroxscaffold_5G00369640 Rroxscaffold_6G00420960
rosa_rugosa	Rorug03G0030000 Rorug04G0220800
rosa_samantha	Rh1AG044500 Rh1BG042400 Rh3AG088300 Rh3BG091200 Rh3CG091400 Rh3DG092200 Rh4AG278200 Rh4AG423300 Rh4BG283700 Rh4BG435300 Rh4CG299400 Rh4DG281000 Rh4DG431600
rosa_wichuraiana	Rw3G007540 Rw4G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	27
AcoI	YGGCCR	1 cut(s)	125
AcuI	CTGAAG	1 cut(s)	25
AgsI	TTSAA	1 cut(s)	52
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
Alw26I	GTCTC	1 cut(s)	223
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	2 cut(s)	62, 125
ApeKI	GCWGC	2 cut(s)	182, 185
AsuC2I	CCSGG	2 cut(s)	165, 166
AvaI	CYCGRG	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	165
BbvI	GCAGC	2 cut(s)	169, 172
BcnI	CCSGG	2 cut(s)	165, 166
BcoDI	GTCTC	1 cut(s)	223
BisI	GCNGC	2 cut(s)	183, 186
BlpI	GCTNAGC	1 cut(s)	159
BlsI	GCNGC	2 cut(s)	184, 187
Bme1390I	CCNGG	2 cut(s)	165, 166
BmeT110I	CYCGRG	1 cut(s)	164
BmrFI	CCNGG	2 cut(s)	165, 166
BoxI	GACNNNNGTC	1 cut(s)	144
Bpu1102I	GCTNAGC	1 cut(s)	159
BpuMI	CCSGG	2 cut(s)	165, 166
BsaJI	CCNNGG	1 cut(s)	164
BseDI	CCNNGG	1 cut(s)	164
BseMII	CTCAG	2 cut(s)	150, 234
BseRI	GAGGAG	2 cut(s)	73, 149
BseXI	GCAGC	2 cut(s)	169, 172
Bsh1285I	CGRYCG	1 cut(s)	152
BshFI	GGCC	2 cut(s)	64, 127
BsiEI	CGRYCG	1 cut(s)	152
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	165
BslFI	GGGAC	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	95
BsnI	GGCC	2 cut(s)	64, 127
BsoBI	CYCGRG	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	165
Bsp1720I	GCTNAGC	1 cut(s)	159
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	2 cut(s)	64, 127
BspCNI	CTCAG	2 cut(s)	151, 233
BssECI	CCNNGG	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	159, 220
BstMAI	GTCTC	1 cut(s)	223
BstMCI	CGRYCG	1 cut(s)	152
BstPAI	GACNNNNGTC	1 cut(s)	144
BstSCI	CCNGG	2 cut(s)	163, 164
BstV1I	GCAGC	2 cut(s)	169, 172
BsuRI	GGCC	2 cut(s)	64, 127
Cac8I	GCNNGC	1 cut(s)	7
Cfr9I	CCCGGG	1 cut(s)	164
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	5 cut(s)	64, 127, 158, 163, 182
CviKI_1	RGCY	5 cut(s)	64, 127, 158, 163, 182
DdeI	CTNAG	2 cut(s)	159, 220
EaeI	YGGCCR	1 cut(s)	125
EciI	GGCGGA	1 cut(s)	16
Eco24I	GRGCYC	1 cut(s)	165
Eco57I	CTGAAG	1 cut(s)	25
Eco88I	CYCGRG	1 cut(s)	164
EcoT38I	GRGCYC	1 cut(s)	165
FaeI	CATG	1 cut(s)	109
FaiI	YATR	5 cut(s)	47, 89, 107, 194, 228
FaqI	GGGAC	1 cut(s)	95
FatI	CATG	1 cut(s)	105
Fnu4HI	GCNGC	2 cut(s)	183, 186
FriOI	GRGCYC	1 cut(s)	165
Fsp4HI	GCNGC	2 cut(s)	183, 186
GluI	GCNGC	2 cut(s)	183, 186
HaeIII	GGCC	2 cut(s)	64, 127
HapII	CCGG	1 cut(s)	165
Hin1II	CATG	1 cut(s)	109
HincII	GTYRAC	1 cut(s)	236
HindII	GTYRAC	1 cut(s)	236
HinfI	GANTC	2 cut(s)	98, 201
HpaII	CCGG	1 cut(s)	165
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	1 cut(s)	223
Hpy8I	GTNNAC	1 cut(s)	236
HpyAV	CCTTC	1 cut(s)	40
HpyCH4V	TGCA	1 cut(s)	113
HpyF3I	CTNAG	2 cut(s)	159, 220
Hsp92II	CATG	1 cut(s)	109
LpnPI	CCDG	1 cut(s)	178
Lsp1109I	GCAGC	2 cut(s)	169, 172
MboII	GAAGA	2 cut(s)	31, 31
MhlI	GDGCHC	1 cut(s)	165
MnlI	CCTC	8 cut(s)	51, 54, 71, 88, 111, 127, 130, 137
MseI	TTAA	1 cut(s)	241
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	2 cut(s)	165, 166
NciI	CCSGG	2 cut(s)	165, 166
NlaIII	CATG	1 cut(s)	109
NmeAIII	GCCGAG	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	98, 201
PkrI	GCNGC	2 cut(s)	184, 187
PshAI	GACNNNNGTC	1 cut(s)	144
SaqAI	TTAA	1 cut(s)	241
SatI	GCNGC	2 cut(s)	183, 186
ScrFI	CCNGG	2 cut(s)	165, 166
SduI	GDGCHC	1 cut(s)	165
SetI	ASST	3 cut(s)	148, 184, 241
SmaI	CCCGGG	1 cut(s)	166
SsiI	CCGC	1 cut(s)	27
StyD4I	CCNGG	2 cut(s)	163, 164
TaqI	TCGA	1 cut(s)	56
TaqII	GACCGA	1 cut(s)	138
TfiI	GAWTC	2 cut(s)	98, 201
Tru1I	TTAA	1 cut(s)	241
Tru9I	TTAA	1 cut(s)	241
TseI	GCWGC	2 cut(s)	182, 185
TspDTI	ATGAA	1 cut(s)	181
TspMI	CCCGGG	1 cut(s)	164
XmaI	CCCGGG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.