Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000066.1

Orthogroup ID

OG0002239

Physical Location & Seq

Genomic Coordinates Reverse (-)

28429 .. 28662

Gene Structure 234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000066.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

atgggaaagacgtcgttgttctccttctgcaacatgttcaaggcctgcttttctggtggaagccgggacgacacttactctgatgatggtggtgtttatagaagaagaatatgtccgagcgatgaggacagaggcggttggactgctgagcctgggatcgaccgcaaggccactgctttcattgcaaggttctacgagagtcacgtttcggatgctgagtaccatgctgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF761

Protein Analysis

77

Amino Acids

8.61

Weight (kDa)

5.54

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05858 AT5G26620
fragaria_vesca	FvH4_4g21750 FvH4_6g08530
malus_domestica	MD04G1186400.v1.1 MD13G1137300.v1.1 MD13G1137400.v1.1 MD16G1133300.v1.1
prunus_persica	Prupe.1G207900_v2.0.a1 Prupe.4G278700_v2.0.a1 Prupe.6G304200_v2.0.a1 Prupe.6G304300_v2.0.a1
pyrus_communis	pycom04g16470 pycom12g18640
rosa_chinensis	RchiOBHm_Chr1g0321401 RchiOBHm_Chr3g0458591 RchiOBHm_Chr4g0427981
rosa_multiflora	Rmu_co8422555.1_g000001 Rmu_sc0000066.1_g000008 Rmu_sc0000724.1_g000012 Rmu_sc0001634.1_g000005 Rmu_sc0004404.1_g000003
rosa_roxburghii	Rroxscaffold_160G00434010 Rroxscaffold_4G00327780 Rroxscaffold_5G00369640 Rroxscaffold_6G00420960
rosa_rugosa	Rorug03G0030000 Rorug04G0220800
rosa_samantha	Rh1AG044500 Rh1BG042400 Rh3AG088300 Rh3BG091200 Rh3CG091400 Rh3DG092200 Rh4AG278200 Rh4AG423300 Rh4BG283700 Rh4BG435300 Rh4CG299400 Rh4DG281000 Rh4DG431600
rosa_wichuraiana	Rw3G007540 Rw4G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	14
AciI	CCGC	2 cut(s)	135, 163
AclWI	GGATC	1 cut(s)	164
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	1 cut(s)	221
AflIII	ACRYGT	1 cut(s)	33
AgsI	TTSAA	1 cut(s)	40
AjnI	CCWGG	1 cut(s)	151
AlwI	GGATC	1 cut(s)	164
AoxI	GGCC	2 cut(s)	42, 168
AsuC2I	CCSGG	1 cut(s)	65
BccI	CCATC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	153
BcnI	CCSGG	1 cut(s)	65
BlpI	GCTNAGC	1 cut(s)	147
Bme1390I	CCNGG	2 cut(s)	65, 153
BmrFI	CCNGG	2 cut(s)	65, 153
BmsI	GCATC	1 cut(s)	202
Bpu1102I	GCTNAGC	1 cut(s)	147
BpuMI	CCSGG	1 cut(s)	65
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	152
Bse3DI	GCAATG	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	152
BseGI	GGATG	1 cut(s)	217
BseMI	GCAATG	1 cut(s)	180
BseMII	CTCAG	2 cut(s)	138, 207
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	2 cut(s)	44, 170
BsiEI	CGRYCG	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	64
BslFI	GGGAC	1 cut(s)	80
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	44, 170
Bsp143I	GATC	1 cut(s)	156
Bsp1720I	GCTNAGC	1 cut(s)	147
BspACI	CCGC	2 cut(s)	135, 163
BspANI	GGCC	2 cut(s)	44, 170
BspCNI	CTCAG	2 cut(s)	139, 208
BspPI	GGATC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	152
BssMI	GATC	1 cut(s)	156
BssNI	GRCGYC	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	153
BstACI	GRCGYC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	2 cut(s)	147, 216
BstF5I	GGATG	1 cut(s)	217
BstKTI	GATC	1 cut(s)	159
BstMBI	GATC	1 cut(s)	156
BstMCI	CGRYCG	1 cut(s)	163
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNI	CCWGG	1 cut(s)	153
BstNSI	RCATGY	1 cut(s)	37
BstSCI	CCNGG	2 cut(s)	63, 151
BsuRI	GGCC	2 cut(s)	44, 170
BtgZI	GCGATG	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	217
BtsI	GCAGTG	1 cut(s)	171
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	2 cut(s)	34, 224
CviJI	RGCY	4 cut(s)	44, 63, 151, 170
CviKI_1	RGCY	4 cut(s)	44, 63, 151, 170
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	2 cut(s)	147, 216
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
Eco147I	AGGCCT	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	151
FaeI	CATG	2 cut(s)	37, 227
FaiI	YATR	4 cut(s)	35, 99, 112, 225
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	2 cut(s)	33, 223
FokI	GGATG	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	44, 170
HapII	CCGG	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	2 cut(s)	37, 227
HinfI	GANTC	1 cut(s)	199
HpaII	CCGG	1 cut(s)	64
Hpy188I	TCNGA	3 cut(s)	82, 117, 211
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	34
HpyCH4IV	ACGT	2 cut(s)	11, 204
HpyCH4V	TGCA	2 cut(s)	30, 185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	2 cut(s)	147, 216
HpySE526I	ACGT	2 cut(s)	11, 204
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	2 cut(s)	37, 227
Kzo9I	GATC	1 cut(s)	156
LpnPI	CCDG	5 cut(s)	39, 58, 77, 138, 165
LweI	GCATC	1 cut(s)	202
MaeII	ACGT	2 cut(s)	11, 204
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MboII	GAAGA	2 cut(s)	114, 117
MlyI	GAGTC	1 cut(s)	208
MmeI	TCCRAC	1 cut(s)	119
MnlI	CCTC	2 cut(s)	118, 125
MspI	CCGG	1 cut(s)	64
MspR9I	CCNGG	2 cut(s)	65, 153
MvaI	CCWGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	1 cut(s)	182
NciI	CCSGG	1 cut(s)	65
NdeII	GATC	1 cut(s)	156
NlaIII	CATG	2 cut(s)	37, 227
NmuCI	GTSAC	1 cut(s)	200
NspI	RCATGY	1 cut(s)	37
PceI	AGGCCT	1 cut(s)	44
PciI	ACATGT	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PleI	GAGTC	1 cut(s)	207
PpsI	GAGTC	1 cut(s)	207
PscI	ACATGT	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	151
PspGI	CCWGG	1 cut(s)	151
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
Sau3AI	GATC	1 cut(s)	156
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	2 cut(s)	65, 153
SetI	ASST	3 cut(s)	14, 191, 207
SfaNI	GCATC	1 cut(s)	202
SseBI	AGGCCT	1 cut(s)	44
SsiI	CCGC	2 cut(s)	135, 163
StuI	AGGCCT	1 cut(s)	44
StyD4I	CCNGG	2 cut(s)	63, 151
TaiI	ACGT	2 cut(s)	14, 207
TaqI	TCGA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	178
TseFI	GTSAC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	169
TspRI	CASTG	1 cut(s)	178
XceI	RCATGY	1 cut(s)	37
ZraI	GACGTC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.