FvH4_4g31990

Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
30857220 .. 30859208
1989 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g31990.t1

Sequence Viewer

Length: 1479 bp
ATGGAAATGCAGAAATTTGATGCTGTAGTGGGAGATACAACAATCATTGCCAGTAGGACAGCTTATGTGGATTTTACACTACCTTATTCTGAATCAGGCGTACAGATGGTGGTGAAGGCTGTTAAAGATGACAAACGAAAGAATATGTGGATTTTCCTAAAACCTCTTAGTTGGGAACTTTGGTTGACAACTGGGGGTGCCATCATTTTTACCGCTGTTGTAGTATGGTTCTTGGAACACAATCAAAACATCGAGTTCAGAGGTTCGCGACAGCAACAAGAGAGGGTGGTGAGCAACTGGACAAGATTTGTGCTGATCATATGGATTTTTGTGGTACTCATCCTAACACAGAGTTACACTGCCAGCTTAGCCTCACTGCTGACTGTAGAAAGGTTGCAGCCAGCAGTTGTTGATGTAAATGAACTCAGACGTAATGGTGCTTACGTTGGATACCAAAAGAATTCCTTTGTACGAGAGCTATTAACAAGAGAATTAAAGTTTGAGGAGAACAGGCTAAAGGATTATAGATTTCCTGAGGAGTATCATACAGCATTGTCTATAGGCAGCAAAAATGGTGGCGTTGATGCTATATTTGACGAAATCCCCTACCTGAAGCTCTTCCTTGCCAAGTATTGTACTGGATACACTATTGTTGGACCAACCTACAAAACTGACGGATTTGGCTTTGCCTTCCCATTAGGCTCCCCTCTTGTTGCTTACGTTTCGAGGGCAATCTTGAATGTAACTCAAGATCATGAGAAAATGGAACAACTGCAACGGAATTATTTCCCGGATGAATCCAAATGTCAAGATCCGAGGTCCACATTCTCTTCAGAAAATCAAAGTCTAAGCGTGTACAACTTTGCAGGCCTCTTCATCATCACAGCAGTCATTTCAATTTCTTCATGCTCAATATATACACTTTCCAAGTTCCTCTATAAAAAGTGGACTGTCTTGAATTCCATCCATGCAAAACCCAGCTCACTCTTGTCAGTATGGAAGCATTTTCATCAAAACAAACCAACTGATCAACATACACCTGCTTCATCAGCAACAAATGCTAGAGGTAGTGAAGCTTCACAGATGCTAGAGTCTTTCCACCAAGCATTCGACAATGTTGCCAAAGATGAACCGAGGGGGCTTTCCAGAGTGGTCAGTATGCATTTAGATGAAAGAGACTCGAAAATGAAGAAGATTGAAGAGGAGCAGACGAGGACTAGGGAGGGCCATGAAGTGAGCTTGCCTCTTCACAGGGCTGAACTTGATAAATTACTAAGGGTGGCTGTGCAGGAGATCATGGCAGTGGAGATGGACAAGGCCATACAGAGGGCTGGGTTGTTAAACCTGGGACCTTCTTTGGCTGCAATCCTCGCGATGGCGAACGAGACAAACAGAAGCACATCACAGTTAAACCGGTTGAATGAAGTGAATGCATCAACCCGTCTTCCTGCAGCTACTATTGCTAATCAGGATCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

493

Amino Acids

55.84

Weight (kDa)

7.73

Isoelectric Point (pI)

38.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP_bac_3 PF00497 3 - 264 3.4e-06 Bacterial extracellular solute-binding proteins, family 3
Lig_chan PF00060 92 - 297 2.8e-21 Ligand-gated ion channel
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1048
Acc36I ACCTGC 1 cut(s) 1048
AccB1I GGYRCC 1 cut(s) 197
AccII CGCG 2 cut(s) 268, 1373
AciI CCGC 1 cut(s) 213
AclWI GGATC 1 cut(s) 806
AcsI RAATTY 3 cut(s) 14, 460, 958
AcuI CTGAAG 2 cut(s) 632, 816
AfaI GTAC 5 cut(s) 102, 336, 471, 637, 857
AfiI CCNNNNNNNGG 2 cut(s) 1326, 1375
AgeI ACCGGT 1 cut(s) 1413
AgsI TTSAA 5 cut(s) 739, 897, 958, 1199, 1420
AjnI CCWGG 1 cut(s) 1344
AluBI AGCT 8 cut(s) 62, 366, 478, 616, 981, 1076, 1239, 1454
AluI AGCT 8 cut(s) 62, 366, 478, 616, 981, 1076, 1239, 1454
Alw26I GTCTC 2 cut(s) 1170, 1379
AlwI GGATC 1 cut(s) 806
AoxI GGCC 3 cut(s) 868, 1225, 1317
ApeKI GCWGC 4 cut(s) 397, 564, 1361, 1451
ApoI RAATTY 3 cut(s) 14, 460, 958
AsiGI ACCGGT 1 cut(s) 1413
Asp700I GAANNNNTTC 2 cut(s) 617, 785
AspS9I GGNCC 4 cut(s) 656, 819, 1225, 1349
AsuC2I CCSGG 1 cut(s) 791
AsuHPI GGTGA 2 cut(s) 124, 301
AvaII GGWCC 3 cut(s) 656, 819, 1349
AxyI CCTNAGG 1 cut(s) 534
BanI GGYRCC 1 cut(s) 197
BarI GAAGNNNNNNTAC 2 cut(s) 1060, 1092
BbsI GAAGAC 1 cut(s) 1436
BbvI GCAGC 4 cut(s) 409, 576, 1348, 1463
BccI CCATC 5 cut(s) 100, 209, 971, 1303, 1369
BcgI CGANNNNNNTGC 2 cut(s) 1100, 1134
BciT130I CCWGG 1 cut(s) 1346
BciVI GTATCC 2 cut(s) 443, 635
BclI TGATCA 2 cut(s) 315, 1027
BcnI CCSGG 1 cut(s) 791
BcoDI GTCTC 2 cut(s) 1170, 1379
BfaI CTAG 3 cut(s) 1062, 1088, 1218
BfmI CTRYAG 4 cut(s) 24, 384, 558, 1449
BfuAI ACCTGC 1 cut(s) 1048
BfuI GTATCC 2 cut(s) 443, 635
BisI GCNGC 4 cut(s) 398, 565, 1362, 1452
BlpI GCTNAGC 1 cut(s) 367
BlsI GCNGC 4 cut(s) 399, 566, 1363, 1453
Bme1390I CCNGG 2 cut(s) 791, 1346
Bme18I GGWCC 3 cut(s) 656, 819, 1349
BmgT120I GGNCC 4 cut(s) 656, 819, 1225, 1349
BmiI GGNNCC 3 cut(s) 199, 703, 1350
BmrFI CCNGG 2 cut(s) 791, 1346
BmrI ACTGGG 1 cut(s) 201
BmsI GCATC 4 cut(s) 10, 574, 1074, 1442
BmuI ACTGGG 1 cut(s) 201
BpiI GAAGAC 1 cut(s) 1436
BplI GAGNNNNNCTC 2 cut(s) 1228, 1260
Bpu1102I GCTNAGC 1 cut(s) 367
BpuEI CTTGAG 1 cut(s) 732
BpuMI CCSGG 1 cut(s) 791
BsaJI CCNNGG 3 cut(s) 815, 1133, 1345
BsaWI WCCGGW 1 cut(s) 1413
Bsc4I CCNNNNNNNGG 2 cut(s) 1326, 1375
Bse118I RCCGGY 1 cut(s) 1413
Bse1I ACTGG 4 cut(s) 51, 196, 302, 643
Bse21I CCTNAGG 1 cut(s) 534
Bse3DI GCAATG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 1346
BseDI CCNNGG 3 cut(s) 815, 1133, 1345
BseGI GGATG 3 cut(s) 339, 799, 963
BseLI CCNNNNNNNGG 2 cut(s) 1326, 1375
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 2 cut(s) 439, 525
BseNI ACTGG 4 cut(s) 51, 196, 302, 643
BseRI GAGGAG 3 cut(s) 518, 551, 1217
BseXI GCAGC 4 cut(s) 409, 576, 1348, 1463
BseYI CCCAGC 2 cut(s) 977, 1331
BsgI GTGCAG 1 cut(s) 1307
Bsh1236I CGCG 2 cut(s) 268, 1373
BshFI GGCC 3 cut(s) 870, 1227, 1319
BshNI GGYRCC 1 cut(s) 197
BshTI ACCGGT 1 cut(s) 1413
BsiSI CCGG 2 cut(s) 791, 1414
BslFI GGGAC 1 cut(s) 1362
BslI CCNNNNNNNGG 2 cut(s) 1326, 1375
BsmAI GTCTC 2 cut(s) 1170, 1379
BsmFI GGGAC 1 cut(s) 1362
BsmI GAATGC 2 cut(s) 1106, 1435
BsnI GGCC 3 cut(s) 870, 1227, 1319
Bsp1407I TGTACA 1 cut(s) 855
Bsp143I GATC 6 cut(s) 315, 751, 811, 1027, 1293, 1471
Bsp1720I GCTNAGC 1 cut(s) 367
Bsp68I TCGCGA 2 cut(s) 268, 1373
BspACI CCGC 1 cut(s) 213
BspANI GGCC 3 cut(s) 870, 1227, 1319
BspCNI CTCAG 2 cut(s) 438, 526
BspFNI CGCG 2 cut(s) 268, 1373
BspHI TCATGA 1 cut(s) 754
BspLI GGNNCC 3 cut(s) 199, 703, 1350
BspMAI CTGCAG 1 cut(s) 1453
BspMI ACCTGC 1 cut(s) 1048
BspPI GGATC 1 cut(s) 806
BspQI GCTCTTC 1 cut(s) 623
BspT107I GGYRCC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 1413
BsrGI TGTACA 1 cut(s) 855
BsrI ACTGG 4 cut(s) 51, 196, 302, 643
BssAI RCCGGY 1 cut(s) 1413
BssECI CCNNGG 3 cut(s) 815, 1133, 1345
BssMI GATC 6 cut(s) 315, 751, 811, 1027, 1293, 1471
Bst2UI CCWGG 1 cut(s) 1346
Bst4CI ACNGT 3 cut(s) 385, 952, 1407
Bst6I CTCTTC 5 cut(s) 623, 835, 878, 1194, 1251
BstAPI GCANNNNNTGC 1 cut(s) 1058
BstAUI TGTACA 1 cut(s) 855
BstC8I GCNNGC 4 cut(s) 364, 402, 868, 1241
BstDEI CTNAG 6 cut(s) 167, 367, 425, 534, 848, 1274
BstF5I GGATG 3 cut(s) 339, 799, 963
BstFNI CGCG 2 cut(s) 268, 1373
BstKTI GATC 6 cut(s) 318, 754, 814, 1030, 1296, 1474
BstMAI GTCTC 2 cut(s) 1170, 1379
BstMBI GATC 6 cut(s) 315, 751, 811, 1027, 1293, 1471
BstMWI GCNNNNNNNGC 5 cut(s) 368, 1049, 1058, 1370, 1460
BstNI CCWGG 1 cut(s) 1346
BstSCI CCNGG 2 cut(s) 789, 1344
BstSFI CTRYAG 4 cut(s) 24, 384, 558, 1449
BstUI CGCG 2 cut(s) 268, 1373
BstV1I GCAGC 4 cut(s) 409, 576, 1348, 1463
BstV2I GAAGAC 1 cut(s) 1436
BstX2I RGATCY 1 cut(s) 811
BstYI RGATCY 1 cut(s) 811
Bsu36I CCTNAGG 1 cut(s) 534
BsuI GTATCC 2 cut(s) 443, 635
BsuRI GGCC 3 cut(s) 870, 1227, 1319
BtgZI GCGATG 1 cut(s) 1388
BtsCI GGATG 3 cut(s) 339, 799, 963
BtsI GCAGTG 3 cut(s) 357, 374, 1308
BtsIMutI CAGTG 3 cut(s) 357, 374, 1308
BtuMI TCGCGA 2 cut(s) 268, 1373
BveI ACCTGC 1 cut(s) 1048
Cac8I GCNNGC 4 cut(s) 364, 402, 868, 1241
CciI TCATGA 1 cut(s) 754
Cfr10I RCCGGY 1 cut(s) 1413
Cfr13I GGNCC 4 cut(s) 656, 819, 1225, 1349
Csp6I GTAC 5 cut(s) 101, 335, 470, 636, 856
CspAI ACCGGT 1 cut(s) 1413
CspCI CAANNNNNGTGG 2 cut(s) 556, 591
CviAII CATG 5 cut(s) 755, 906, 968, 1229, 1297
CviQI GTAC 5 cut(s) 101, 335, 470, 636, 856
DdeI CTNAG 6 cut(s) 167, 367, 425, 534, 848, 1274
DpnI GATC 6 cut(s) 317, 753, 813, 1029, 1295, 1473
DpnII GATC 6 cut(s) 315, 751, 811, 1027, 1293, 1471
Eam1104I CTCTTC 5 cut(s) 623, 835, 878, 1194, 1251
EarI CTCTTC 5 cut(s) 623, 835, 878, 1194, 1251
Eco147I AGGCCT 1 cut(s) 870
Eco47I GGWCC 3 cut(s) 656, 819, 1349
Eco57I CTGAAG 2 cut(s) 632, 816
Eco81I CCTNAGG 1 cut(s) 534
EcoO109I RGGNCCY 1 cut(s) 1349
EcoRI GAATTC 2 cut(s) 460, 958
EcoRII CCWGG 1 cut(s) 1344
EcoT22I ATGCAT 2 cut(s) 1164, 1435
FaeI CATG 5 cut(s) 758, 909, 971, 1232, 1300
FalI AAGNNNNNCTT 2 cut(s) 449, 481
FaqI GGGAC 1 cut(s) 1362
FatI CATG 5 cut(s) 754, 905, 967, 1228, 1296
FauNDI CATATG 1 cut(s) 320
FbaI TGATCA 2 cut(s) 315, 1027
Fnu4HI GCNGC 4 cut(s) 398, 565, 1362, 1452
FokI GGATG 3 cut(s) 326, 806, 950
Fsp4HI GCNGC 4 cut(s) 398, 565, 1362, 1452
FspBI CTAG 3 cut(s) 1062, 1088, 1218
GluI GCNGC 4 cut(s) 398, 565, 1362, 1452
GsaI CCCAGC 2 cut(s) 981, 1335
HaeIII GGCC 3 cut(s) 870, 1227, 1319
HapII CCGG 2 cut(s) 791, 1414
Hin1II CATG 5 cut(s) 758, 909, 971, 1232, 1300
HincII GTYRAC 1 cut(s) 186
HindII GTYRAC 1 cut(s) 186
HindIII AAGCTT 1 cut(s) 1074
HinfI GANTC 4 cut(s) 92, 797, 1091, 1178
HpaII CCGG 2 cut(s) 791, 1414
HphI GGTGA 2 cut(s) 124, 301
Hpy166II GTNNAC 4 cut(s) 186, 822, 856, 948
Hpy188I TCNGA 5 cut(s) 91, 260, 428, 816, 835
Hpy8I GTNNAC 4 cut(s) 186, 822, 856, 948
HpyAV CCTTC 3 cut(s) 109, 700, 1362
HpyCH4III ACNGT 3 cut(s) 385, 952, 1407
HpyCH4IV ACGT 3 cut(s) 430, 444, 720
HpyF10VI GCNNNNNNNGC 5 cut(s) 368, 1049, 1058, 1370, 1460
HpyF3I CTNAG 6 cut(s) 167, 367, 425, 534, 848, 1274
HpySE526I ACGT 3 cut(s) 430, 444, 720
Hsp92II CATG 5 cut(s) 758, 909, 971, 1232, 1300
Ksp22I TGATCA 2 cut(s) 315, 1027
Kzo9I GATC 6 cut(s) 315, 751, 811, 1027, 1293, 1471
LguI GCTCTTC 1 cut(s) 623
LmnI GCTCC 2 cut(s) 707, 1204
Lsp1109I GCAGC 4 cut(s) 409, 576, 1348, 1463
LweI GCATC 4 cut(s) 10, 574, 1074, 1442
MaeI CTAG 3 cut(s) 1062, 1088, 1218
MaeII ACGT 3 cut(s) 430, 444, 720
MaeIII GTNAC 2 cut(s) 353, 742
MalI GATC 6 cut(s) 317, 753, 813, 1029, 1295, 1473
MboI GATC 6 cut(s) 315, 751, 811, 1027, 1293, 1471
MboII GAAGA 9 cut(s) 610, 822, 865, 894, 1201, 1204, 1211, 1238, 1436
MflI RGATCY 1 cut(s) 811
MluCI AATT 7 cut(s) 14, 460, 491, 781, 897, 958, 1268
MlyI GAGTC 2 cut(s) 1100, 1172
MmeI TCCRAC 2 cut(s) 427, 634
Mph1103I ATGCAT 2 cut(s) 1164, 1435
MroXI GAANNNNTTC 2 cut(s) 617, 785
MseI TTAA 5 cut(s) 123, 482, 494, 1340, 1409
MslI CAYNNNNRTG 2 cut(s) 1167, 1301
MspA1I CMGCKG 1 cut(s) 215
MspI CCGG 2 cut(s) 791, 1414
MspR9I CCNGG 2 cut(s) 791, 1346
Mva1269I GAATGC 2 cut(s) 1106, 1435
MvaI CCWGG 1 cut(s) 1346
MvnI CGCG 2 cut(s) 268, 1373
MwoI GCNNNNNNNGC 5 cut(s) 368, 1049, 1058, 1370, 1460
NciI CCSGG 1 cut(s) 791
NdeI CATATG 1 cut(s) 320
NdeII GATC 6 cut(s) 315, 751, 811, 1027, 1293, 1471
NlaIII CATG 5 cut(s) 758, 909, 971, 1232, 1300
NlaIV GGNNCC 3 cut(s) 199, 703, 1350
NruI TCGCGA 2 cut(s) 268, 1373
NsiI ATGCAT 2 cut(s) 1164, 1435
PagI TCATGA 1 cut(s) 754
PaqCI CACCTGC 1 cut(s) 1048
PceI AGGCCT 1 cut(s) 870
PciSI GCTCTTC 1 cut(s) 623
PctI GAATGC 2 cut(s) 1106, 1435
PdmI GAANNNNTTC 2 cut(s) 617, 785
PfeI GAWTC 2 cut(s) 92, 797
PfoI TCCNGGA 1 cut(s) 789
PinAI ACCGGT 1 cut(s) 1413
PkrI GCNGC 4 cut(s) 399, 566, 1363, 1453
PleI GAGTC 2 cut(s) 1099, 1172
PpsI GAGTC 2 cut(s) 1099, 1172
PpuMI RGGWCCY 1 cut(s) 1349
Psp5II RGGWCCY 1 cut(s) 1349
Psp6I CCWGG 1 cut(s) 1344
PspFI CCCAGC 2 cut(s) 977, 1331
PspGI CCWGG 1 cut(s) 1344
PspN4I GGNNCC 3 cut(s) 199, 703, 1350
PspPI GGNCC 4 cut(s) 656, 819, 1225, 1349
PspPPI RGGWCCY 1 cut(s) 1349
PstI CTGCAG 1 cut(s) 1453
PsuI RGATCY 1 cut(s) 811
RruI TCGCGA 2 cut(s) 268, 1373
RsaI GTAC 5 cut(s) 102, 336, 471, 637, 857
RsaNI GTAC 5 cut(s) 101, 335, 470, 636, 856
RseI CAYNNNNRTG 2 cut(s) 1167, 1301
SapI GCTCTTC 1 cut(s) 623
SaqAI TTAA 5 cut(s) 123, 482, 494, 1340, 1409
SatI GCNGC 4 cut(s) 398, 565, 1362, 1452
Sau3AI GATC 6 cut(s) 315, 751, 811, 1027, 1293, 1471
Sau96I GGNCC 4 cut(s) 656, 819, 1225, 1349
SchI GAGTC 2 cut(s) 1100, 1172
ScrFI CCNGG 2 cut(s) 791, 1346
SfaNI GCATC 4 cut(s) 10, 574, 1074, 1442
SfcI CTRYAG 4 cut(s) 24, 384, 558, 1449
SinI GGWCC 3 cut(s) 656, 819, 1349
SmiMI CAYNNNNRTG 2 cut(s) 1167, 1301
SmlI CTYRAG 1 cut(s) 747
SmoI CTYRAG 1 cut(s) 747
Sse9I AATT 7 cut(s) 14, 460, 491, 781, 897, 958, 1268
SseBI AGGCCT 1 cut(s) 870
SsiI CCGC 1 cut(s) 213
SspMI CTAG 3 cut(s) 1062, 1088, 1218
StuI AGGCCT 1 cut(s) 870
StyD4I CCNGG 2 cut(s) 789, 1344
TaaI ACNGT 3 cut(s) 385, 952, 1407
TaiI ACGT 3 cut(s) 433, 447, 723
TaqI TCGA 4 cut(s) 252, 725, 1110, 1181
TasI AATT 7 cut(s) 14, 460, 491, 781, 897, 958, 1268
TatI WGTACW 2 cut(s) 635, 855
TfiI GAWTC 2 cut(s) 92, 797
Tru1I TTAA 5 cut(s) 123, 482, 494, 1340, 1409
Tru9I TTAA 5 cut(s) 123, 482, 494, 1340, 1409
TscAI CASTG 3 cut(s) 364, 381, 1308
TseI GCWGC 4 cut(s) 397, 564, 1361, 1451
TspGWI ACGGA 2 cut(s) 690, 793
TspRI CASTG 3 cut(s) 364, 381, 1308
VpaK11BI GGWCC 3 cut(s) 656, 819, 1349
XapI RAATTY 3 cut(s) 14, 460, 958
XmnI GAANNNNTTC 2 cut(s) 617, 785
XspI CTAG 3 cut(s) 1062, 1088, 1218
Zsp2I ATGCAT 2 cut(s) 1164, 1435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.