Rh4CG131000

Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0006930
Physical Location & Seq
Forward (+)
25796882 .. 25810254
13373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG131000.1

Sequence Viewer

Length: 549 bp
ATGCTAGAGTCTTTCCACAAGGAACTAGATAATGTTCCAACAGATGAACATAAGGTGCTGTCCAGAGAAGTTAGCAGGCGATTAGATGAAAGAGATTCGGAAATGAAGAGGATTGAAGAGGAGCAGAGAAGGATTGGGGAGGCCCATGAAGTGAGTTTGGCGCTTCTTCACAGGGCTGAACTTGATAAACTACTTAAGGTGGCTGTGCAGGAGATCATAGCTGTGGAGATGGACAAGGCCATACAGAGGGCTGGGTTGTTAGACTTGGGACCTTCTTTGGCTGCATTGCTCGGAATGGCAGGCGAAATAAAAAGAAATACATCACAGTCAACAAACCAGGGCGATCCCTTTTTTTCTTCTACAGCAACGCGTGCAGTTGGGCTGGGATTGGATTTTGACGAGGGTGGTAGAACTCTCTCCTCCTTGTTGGATTTGTTCCTAGCGCGGGCTGGTCTGAGGATGGACCAAAGCGGTGGAGGCAACGACTTATGCGACGACAGTGGTGTGGATGAGGCTGACATGCATGTGGGAATACTGCTTGGCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

182

Amino Acids

19.84

Weight (kDa)

4.77

Isoelectric Point (pI)

51.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 370, 445
AciI CCGC 3 cut(s) 445, 471, 543
AclWI GGATC 1 cut(s) 338
AfiI CCNNNNNNNGG 2 cut(s) 246, 445
AflII CTTAAG 1 cut(s) 194
AflIII ACRYGT 1 cut(s) 368
AgsI TTSAA 1 cut(s) 116
AjnI CCWGG 1 cut(s) 336
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
AlwI GGATC 1 cut(s) 338
AoxI GGCC 2 cut(s) 141, 237
ApeKI GCWGC 1 cut(s) 281
AspLEI GCGC 2 cut(s) 163, 445
AspS9I GGNCC 3 cut(s) 142, 269, 463
AvaII GGWCC 2 cut(s) 269, 463
BbvI GCAGC 1 cut(s) 268
BccI CCATC 2 cut(s) 223, 454
BciT130I CCWGG 1 cut(s) 338
BfaI CTAG 4 cut(s) 5, 26, 440, 547
BfmI CTRYAG 1 cut(s) 360
BfoI RGCGCY 1 cut(s) 164
BfrI CTTAAG 1 cut(s) 194
BisI GCNGC 2 cut(s) 282, 544
BlsI GCNGC 2 cut(s) 283, 545
Bme1390I CCNGG 1 cut(s) 338
Bme18I GGWCC 2 cut(s) 269, 463
BmgT120I GGNCC 3 cut(s) 142, 269, 463
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 338
BsaJI CCNNGG 1 cut(s) 337
Bsc4I CCNNNNNNNGG 2 cut(s) 246, 445
Bse3DI GCAATG 1 cut(s) 284
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 1 cut(s) 337
BseGI GGATG 2 cut(s) 465, 514
BseLI CCNNNNNNNGG 2 cut(s) 246, 445
BseMI GCAATG 1 cut(s) 284
BseMII CTCAG 1 cut(s) 446
BseRI GAGGAG 2 cut(s) 134, 409
BseXI GCAGC 1 cut(s) 268
BseYI CCCAGC 2 cut(s) 251, 382
BsgI GTGCAG 2 cut(s) 227, 393
Bsh1236I CGCG 2 cut(s) 370, 445
BshFI GGCC 2 cut(s) 143, 239
BslFI GGGAC 1 cut(s) 282
BslI CCNNNNNNNGG 2 cut(s) 246, 445
BsmFI GGGAC 1 cut(s) 282
BsnI GGCC 2 cut(s) 143, 239
Bsp143I GATC 2 cut(s) 213, 343
BspACI CCGC 3 cut(s) 445, 471, 543
BspANI GGCC 2 cut(s) 143, 239
BspCNI CTCAG 1 cut(s) 447
BspFNI CGCG 2 cut(s) 370, 445
BspLI GGNNCC 1 cut(s) 270
BspPI GGATC 1 cut(s) 338
BspTI CTTAAG 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 337
BssMI GATC 2 cut(s) 213, 343
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 2 cut(s) 327, 500
Bst6I CTCTTC 2 cut(s) 101, 111
BstAFI CTTAAG 1 cut(s) 194
BstAPI GCANNNNNTGC 1 cut(s) 371
BstC8I GCNNGC 4 cut(s) 77, 301, 372, 447
BstDEI CTNAG 1 cut(s) 455
BstF5I GGATG 2 cut(s) 465, 514
BstFNI CGCG 2 cut(s) 370, 445
BstH2I RGCGCY 1 cut(s) 164
BstHHI GCGC 2 cut(s) 163, 445
BstKTI GATC 2 cut(s) 216, 346
BstMBI GATC 2 cut(s) 213, 343
BstMWI GCNNNNNNNGC 2 cut(s) 371, 477
BstNI CCWGG 1 cut(s) 338
BstNSI RCATGY 2 cut(s) 523, 527
BstSCI CCNGG 1 cut(s) 336
BstSFI CTRYAG 1 cut(s) 360
BstUI CGCG 2 cut(s) 370, 445
BstV1I GCAGC 1 cut(s) 268
BstXI CCANNNNNNTGG 1 cut(s) 473
BsuRI GGCC 2 cut(s) 143, 239
BtsCI GGATG 2 cut(s) 465, 514
BtsIMutI CAGTG 1 cut(s) 505
Cac8I GCNNGC 4 cut(s) 77, 301, 372, 447
CfoI GCGC 2 cut(s) 163, 445
Cfr13I GGNCC 3 cut(s) 142, 269, 463
CviAII CATG 3 cut(s) 146, 520, 524
DdeI CTNAG 1 cut(s) 455
DpnI GATC 2 cut(s) 215, 345
DpnII GATC 2 cut(s) 213, 343
Eam1104I CTCTTC 2 cut(s) 101, 111
EarI CTCTTC 2 cut(s) 101, 111
Eco47I GGWCC 2 cut(s) 269, 463
EcoO109I RGGNCCY 1 cut(s) 269
EcoRII CCWGG 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 525
FaeI CATG 3 cut(s) 149, 523, 527
FaiI YATR 7 cut(s) 51, 147, 218, 242, 490, 521, 525
FaqI GGGAC 1 cut(s) 282
FatI CATG 3 cut(s) 145, 519, 523
FauI CCCGC 1 cut(s) 438
Fnu4HI GCNGC 2 cut(s) 282, 544
FokI GGATG 2 cut(s) 472, 521
Fsp4HI GCNGC 2 cut(s) 282, 544
FspBI CTAG 4 cut(s) 5, 26, 440, 547
GlaI GCGC 2 cut(s) 162, 444
GluI GCNGC 2 cut(s) 282, 544
GsaI CCCAGC 2 cut(s) 255, 386
HaeII RGCGCY 1 cut(s) 164
HaeIII GGCC 2 cut(s) 143, 239
HhaI GCGC 2 cut(s) 163, 445
Hin1II CATG 3 cut(s) 149, 523, 527
Hin6I GCGC 2 cut(s) 161, 443
HinP1I GCGC 2 cut(s) 161, 443
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HinfI GANTC 2 cut(s) 8, 95
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 3 cut(s) 100, 293, 456
Hpy188III TCNNGA 1 cut(s) 63
Hpy8I GTNNAC 1 cut(s) 330
Hpy99I CGWCG 1 cut(s) 497
HpyAV CCTTC 2 cut(s) 123, 282
HpyCH4III ACNGT 2 cut(s) 327, 500
HpyCH4V TGCA 4 cut(s) 208, 284, 374, 523
HpyF10VI GCNNNNNNNGC 2 cut(s) 371, 477
HpyF3I CTNAG 1 cut(s) 455
Hsp92II CATG 3 cut(s) 149, 523, 527
HspAI GCGC 2 cut(s) 161, 443
Kzo9I GATC 2 cut(s) 213, 343
LmnI GCTCC 1 cut(s) 121
Lsp1109I GCAGC 1 cut(s) 268
MaeI CTAG 4 cut(s) 5, 26, 440, 547
MalI GATC 2 cut(s) 215, 345
MboI GATC 2 cut(s) 213, 343
MboII GAAGA 4 cut(s) 118, 128, 158, 348
MluI ACGCGT 1 cut(s) 368
MlyI GAGTC 1 cut(s) 17
MmeI TCCRAC 2 cut(s) 62, 408
MnlI CCTC 9 cut(s) 102, 112, 133, 240, 394, 430, 450, 470, 505
Mph1103I ATGCAT 1 cut(s) 525
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 2 cut(s) 221, 524
MspCI CTTAAG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 338
MvaI CCWGG 1 cut(s) 338
MvnI CGCG 2 cut(s) 370, 445
MwoI GCNNNNNNNGC 2 cut(s) 371, 477
NdeII GATC 2 cut(s) 213, 343
NlaIII CATG 3 cut(s) 149, 523, 527
NlaIV GGNNCC 1 cut(s) 270
NsiI ATGCAT 1 cut(s) 525
NspI RCATGY 2 cut(s) 523, 527
PcsI WCGNNNNNNNCGW 1 cut(s) 489
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 2 cut(s) 283, 545
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
PpuMI RGGWCCY 1 cut(s) 269
Psp5II RGGWCCY 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 336
PspFI CCCAGC 2 cut(s) 251, 382
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 3 cut(s) 142, 269, 463
PspPPI RGGWCCY 1 cut(s) 269
RseI CAYNNNNRTG 2 cut(s) 221, 524
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 2 cut(s) 282, 544
Sau3AI GATC 2 cut(s) 213, 343
Sau96I GGNCC 3 cut(s) 142, 269, 463
SchI GAGTC 1 cut(s) 17
ScrFI CCNGG 1 cut(s) 338
SetI ASST 4 cut(s) 57, 201, 223, 274
SfcI CTRYAG 1 cut(s) 360
SinI GGWCC 2 cut(s) 269, 463
SmiMI CAYNNNNRTG 2 cut(s) 221, 524
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
SsiI CCGC 3 cut(s) 445, 471, 543
SspMI CTAG 4 cut(s) 5, 26, 440, 547
StyD4I CCNGG 1 cut(s) 336
TaaI ACNGT 2 cut(s) 327, 500
TauI GCSGC 1 cut(s) 546
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 1 cut(s) 505
TseI GCWGC 1 cut(s) 281
TspDTI ATGAA 4 cut(s) 60, 102, 119, 162
TspRI CASTG 1 cut(s) 505
Vha464I CTTAAG 1 cut(s) 194
VpaK11BI GGWCC 2 cut(s) 269, 463
XceI RCATGY 2 cut(s) 523, 527
XspI CTAG 4 cut(s) 5, 26, 440, 547
Zsp2I ATGCAT 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.