Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0006930

Physical Location & Seq

Genomic Coordinates Forward (+)

25733804 .. 25737786

Gene Structure 3983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG130900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGTAAATGTGGGCGTAATTCTTGACCTGGGTACTCCGGTTGGGAAGACGGCTCAACGCTGCATATCCATGGCCCTCTCGGATTTCTATGCTAGAAATGTCAACTATCGAACAAAGCTGAATCTTACTGTGAAGGATTCTAGGAATGATGTTGTTTCTGCAGCATCAGCAGAAGCCAGCTCACTCTTGTCAAAAATATCAAAGCATTTTAATCAAAACAAAGCAACTGATCAACAGAAAACTACTTCATCTGCAACAAATGCTAGAGGTGGTGAAGCTTCACAGATGCTAGAGTCTTTCCACCAAGAACTAGACAATGTTCAACATAAGGTGCTGTCCAGAGCAGTTAGCAGGCGTTTAGATGAAAGAGATTCGGAAATGAAGAGGATTGAAGAGGAGCAGAGAAGGATTAGGGAGGGCCATGAAGTGAGTTTGGCTCTTCTTCACAGGGCTGAACTTGATAAATTACTTAAGGTGGCTGTGCAGGAGATCATAGCTGTGGAGATGGACAAGGCCATACAAAGGGCTGGGTTGCGAGACTTGGGACCTTCTTTGGCTGCACTGCTCAGAATGGCAGGCGAAATGAACATAAATACATCACAGTCGACAAACCAGGTGAATGAAGTGAATGCATCAACCAGTCTTCTTGCAGCTACTATTGCTAATCAGGATTATGTGACAAAACCTGATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

231

Amino Acids

25.47

Weight (kDa)

7.87

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006930)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31990 FvH4_4g31991
prunus_persica	Prupe.1G094800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0404041 RchiOBHm_Chr4g0404051 RchiOBHm_Chr4g0404091
rosa_laevigata	RLG00000008926 RLG00000008930 RLG00000008933
rosa_multiflora	Rmu_co8105392.1_g000001 Rmu_co8272517.1_g000001 Rmu_sc0001999.1_g000001 Rmu_sc0003483.1_g000002 Rmu_sc0006579.1_g000005 Rmu_sc0009977.1_g000001 Rmu_sc0020288.1_g000002
rosa_roxburghii	Rroxscaffold_5G00348610
rosa_rugosa	Rorug04G0046800
rosa_samantha	Rh4AG121900 Rh4AG122500 Rh4BG115600 Rh4BG115700 Rh4CG130900 Rh4CG131000 Rh4DG115800
rosa_wichuraiana	Rw4G009970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	605
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	1 cut(s)	522
AflII	CTTAAG	1 cut(s)	470
AgsI	TTSAA	2 cut(s)	323, 392
AjnI	CCWGG	2 cut(s)	27, 612
AluBI	AGCT	5 cut(s)	118, 180, 278, 497, 653
AluI	AGCT	5 cut(s)	118, 180, 278, 497, 653
Alw26I	GTCTC	1 cut(s)	531
AoxI	GGCC	3 cut(s)	72, 418, 513
ApeKI	GCWGC	4 cut(s)	60, 161, 557, 650
AspS9I	GGNCC	3 cut(s)	73, 418, 545
AsuHPI	GGTGA	2 cut(s)	284, 628
AvaII	GGWCC	1 cut(s)	545
BaeI	ACNNNNGTAYC	2 cut(s)	24, 57
BbsI	GAAGAC	2 cut(s)	53, 635
BbvI	GCAGC	4 cut(s)	47, 173, 544, 662
BccI	CCATC	1 cut(s)	499
BceAI	ACGGC	1 cut(s)	66
BciT130I	CCWGG	2 cut(s)	29, 614
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	531
BfaI	CTAG	5 cut(s)	93, 141, 264, 290, 311
BfmI	CTRYAG	1 cut(s)	159
BfrI	CTTAAG	1 cut(s)	470
BisI	GCNGC	4 cut(s)	61, 162, 558, 651
BlsI	GCNGC	4 cut(s)	62, 163, 559, 652
Bme1390I	CCNGG	2 cut(s)	29, 614
Bme18I	GGWCC	1 cut(s)	545
BmgT120I	GGNCC	3 cut(s)	73, 418, 545
BmiI	GGNNCC	1 cut(s)	546
BmrFI	CCNGG	2 cut(s)	29, 614
BmsI	GCATC	3 cut(s)	173, 276, 641
BpiI	GAAGAC	2 cut(s)	53, 635
BplI	GAGNNNNNCTC	2 cut(s)	421, 453
BsaJI	CCNNGG	2 cut(s)	28, 69
BsaWI	WCCGGW	1 cut(s)	37
Bsc4I	CCNNNNNNNGG	1 cut(s)	522
Bse1I	ACTGG	1 cut(s)	639
BseBI	CCWGG	2 cut(s)	29, 614
BseDI	CCNNGG	2 cut(s)	28, 69
BseLI	CCNNNNNNNGG	1 cut(s)	522
BseMII	CTCAG	1 cut(s)	580
BseNI	ACTGG	1 cut(s)	639
BseRI	GAGGAG	1 cut(s)	410
BseXI	GCAGC	4 cut(s)	47, 173, 544, 662
BseYI	CCCAGC	1 cut(s)	527
BsgI	GTGCAG	2 cut(s)	503, 543
BshFI	GGCC	3 cut(s)	74, 420, 515
BsiSI	CCGG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	558
BslI	CCNNNNNNNGG	1 cut(s)	522
BsmAI	GTCTC	1 cut(s)	531
BsmFI	GGGAC	1 cut(s)	558
BsmI	GAATGC	1 cut(s)	634
BsnI	GGCC	3 cut(s)	74, 420, 515
Bsp143I	GATC	2 cut(s)	229, 489
Bsp19I	CCATGG	1 cut(s)	69
BspANI	GGCC	3 cut(s)	74, 420, 515
BspCNI	CTCAG	1 cut(s)	579
BspLI	GGNNCC	1 cut(s)	546
BspMAI	CTGCAG	1 cut(s)	163
BspQI	GCTCTTC	1 cut(s)	444
BspTI	CTTAAG	1 cut(s)	470
BsrI	ACTGG	1 cut(s)	639
BssECI	CCNNGG	2 cut(s)	28, 69
BssMI	GATC	2 cut(s)	229, 489
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	2 cut(s)	29, 614
Bst4CI	ACNGT	2 cut(s)	130, 603
Bst6I	CTCTTC	3 cut(s)	377, 387, 444
BstAFI	CTTAAG	1 cut(s)	470
BstAPI	GCANNNNNTGC	1 cut(s)	260
BstC8I	GCNNGC	3 cut(s)	178, 353, 577
BstDEI	CTNAG	1 cut(s)	566
BstDSI	CCRYGG	1 cut(s)	69
BstKTI	GATC	2 cut(s)	232, 492
BstMAI	GTCTC	1 cut(s)	531
BstMBI	GATC	2 cut(s)	229, 489
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 260, 659
BstNI	CCWGG	2 cut(s)	29, 614
BstSCI	CCNGG	2 cut(s)	27, 612
BstSFI	CTRYAG	1 cut(s)	159
BstV1I	GCAGC	4 cut(s)	47, 173, 544, 662
BstV2I	GAAGAC	2 cut(s)	53, 635
BsuRI	GGCC	3 cut(s)	74, 420, 515
BtgI	CCRYGG	1 cut(s)	69
BtsI	GCAGTG	1 cut(s)	560
BtsIMutI	CAGTG	1 cut(s)	560
Cac8I	GCNNGC	3 cut(s)	178, 353, 577
Cfr13I	GGNCC	3 cut(s)	73, 418, 545
CsiI	ACCWGGT	1 cut(s)	612
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	2 cut(s)	70, 422
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	1 cut(s)	566
DpnI	GATC	2 cut(s)	231, 491
DpnII	GATC	2 cut(s)	229, 489
Eam1104I	CTCTTC	3 cut(s)	377, 387, 444
EarI	CTCTTC	3 cut(s)	377, 387, 444
Eco130I	CCWWGG	1 cut(s)	69
Eco47I	GGWCC	1 cut(s)	545
EcoO109I	RGGNCCY	1 cut(s)	545
EcoRII	CCWGG	2 cut(s)	27, 612
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	634
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	2 cut(s)	73, 425
FaiI	YATR	9 cut(s)	65, 71, 90, 327, 423, 494, 518, 590, 675
FaqI	GGGAC	1 cut(s)	558
FatI	CATG	2 cut(s)	69, 421
FbaI	TGATCA	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	605
Fnu4HI	GCNGC	4 cut(s)	61, 162, 558, 651
Fsp4HI	GCNGC	4 cut(s)	61, 162, 558, 651
FspBI	CTAG	5 cut(s)	93, 141, 264, 290, 311
GluI	GCNGC	4 cut(s)	61, 162, 558, 651
GsaI	CCCAGC	1 cut(s)	531
HaeIII	GGCC	3 cut(s)	74, 420, 515
HapII	CCGG	1 cut(s)	38
Hin1II	CATG	2 cut(s)	73, 425
HincII	GTYRAC	2 cut(s)	103, 606
HindII	GTYRAC	2 cut(s)	103, 606
HindIII	AAGCTT	1 cut(s)	276
HinfI	GANTC	4 cut(s)	121, 137, 293, 371
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	2 cut(s)	284, 628
Hpy166II	GTNNAC	2 cut(s)	103, 606
Hpy188I	TCNGA	3 cut(s)	82, 376, 569
Hpy188III	TCNNGA	3 cut(s)	23, 339, 668
Hpy8I	GTNNAC	2 cut(s)	103, 606
HpyAV	CCTTC	3 cut(s)	127, 399, 558
HpyCH4III	ACNGT	2 cut(s)	130, 603
HpyCH4V	TGCA	7 cut(s)	63, 161, 254, 484, 560, 632, 650
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 260, 659
HpyF3I	CTNAG	1 cut(s)	566
Hsp92II	CATG	2 cut(s)	73, 425
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	229, 489
LguI	GCTCTTC	1 cut(s)	444
LmnI	GCTCC	1 cut(s)	397
Lsp1109I	GCAGC	4 cut(s)	47, 173, 544, 662
LweI	GCATC	3 cut(s)	173, 276, 641
MabI	ACCWGGT	1 cut(s)	612
MaeI	CTAG	5 cut(s)	93, 141, 264, 290, 311
MaeIII	GTNAC	1 cut(s)	676
MalI	GATC	2 cut(s)	231, 491
MboI	GATC	2 cut(s)	229, 489
MboII	GAAGA	6 cut(s)	58, 394, 404, 431, 434, 635
MluCI	AATT	2 cut(s)	18, 464
MlyI	GAGTC	1 cut(s)	302
MnlI	CCTC	5 cut(s)	86, 260, 378, 388, 409
Mph1103I	ATGCAT	1 cut(s)	634
MseI	TTAA	2 cut(s)	210, 471
MslI	CAYNNNNRTG	2 cut(s)	68, 497
MspCI	CTTAAG	1 cut(s)	470
MspI	CCGG	1 cut(s)	38
MspR9I	CCNGG	2 cut(s)	29, 614
Mva1269I	GAATGC	1 cut(s)	634
MvaI	CCWGG	2 cut(s)	29, 614
MwoI	GCNNNNNNNGC	3 cut(s)	167, 260, 659
NcoI	CCATGG	1 cut(s)	69
NdeII	GATC	2 cut(s)	229, 489
NlaIII	CATG	2 cut(s)	73, 425
NlaIV	GGNNCC	1 cut(s)	546
NmuCI	GTSAC	1 cut(s)	676
NsiI	ATGCAT	1 cut(s)	634
PciSI	GCTCTTC	1 cut(s)	444
PctI	GAATGC	1 cut(s)	634
PfeI	GAWTC	3 cut(s)	121, 137, 371
PkrI	GCNGC	4 cut(s)	62, 163, 559, 652
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
PpuMI	RGGWCCY	1 cut(s)	545
Psp5II	RGGWCCY	1 cut(s)	545
Psp6I	CCWGG	2 cut(s)	27, 612
PspFI	CCCAGC	1 cut(s)	527
PspGI	CCWGG	2 cut(s)	27, 612
PspN4I	GGNNCC	1 cut(s)	546
PspPI	GGNCC	3 cut(s)	73, 418, 545
PspPPI	RGGWCCY	1 cut(s)	545
PstI	CTGCAG	1 cut(s)	163
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
RseI	CAYNNNNRTG	2 cut(s)	68, 497
SalI	GTCGAC	1 cut(s)	604
SapI	GCTCTTC	1 cut(s)	444
SaqAI	TTAA	2 cut(s)	210, 471
SatI	GCNGC	4 cut(s)	61, 162, 558, 651
Sau3AI	GATC	2 cut(s)	229, 489
Sau96I	GGNCC	3 cut(s)	73, 418, 545
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	2 cut(s)	29, 614
SexAI	ACCWGGT	1 cut(s)	612
SfaNI	GCATC	3 cut(s)	173, 276, 641
SfcI	CTRYAG	1 cut(s)	159
SinI	GGWCC	1 cut(s)	545
SmiMI	CAYNNNNRTG	2 cut(s)	68, 497
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
Sse9I	AATT	2 cut(s)	18, 464
SspMI	CTAG	5 cut(s)	93, 141, 264, 290, 311
StyD4I	CCNGG	2 cut(s)	27, 612
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	130, 603
TaqI	TCGA	2 cut(s)	109, 605
TasI	AATT	2 cut(s)	18, 464
TfiI	GAWTC	3 cut(s)	121, 137, 371
Tru1I	TTAA	2 cut(s)	210, 471
Tru9I	TTAA	2 cut(s)	210, 471
TscAI	CASTG	1 cut(s)	567
TseFI	GTSAC	1 cut(s)	676
TseI	GCWGC	4 cut(s)	60, 161, 557, 650
Tsp45I	GTSAC	1 cut(s)	676
TspDTI	ATGAA	6 cut(s)	237, 378, 395, 438, 599, 636
TspRI	CASTG	1 cut(s)	567
Vha464I	CTTAAG	1 cut(s)	470
VpaK11BI	GGWCC	1 cut(s)	545
XmiI	GTMKAC	1 cut(s)	605
XspI	CTAG	5 cut(s)	93, 141, 264, 290, 311
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.