Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001999.1

Orthogroup ID

OG0006930

Physical Location & Seq

Genomic Coordinates Reverse (-)

11606 .. 13543

Gene Structure 1938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001999.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1680 bp

atggcaaacaacaatcagtacctcctgataatcttcatgttattagatgtttgcctaatctatggcaacttctcagctgttggtgaagatggaaccggaagaaaatcacagcaaatggtaaatgtgggtgtaattcttgacctgggtactccggttgggaagacggctcaacgctgcatatccatggcgctctcggaattctatgctagaaatgccaactatcgaacaaagctgaatcttactgtgaaggattctaggaatgatgttgtttctgcagcaacagcagctttagaattgctaaataatgaagaggtgcaagctattataggtccccaaacatcaaaccaagctaagtttgtcataagtcttggagagaaagcacaaatccccattatctcgttttcagccacaagcccttctttgtctccaactatgaaccgtttcttcgtcaggacagctctggatgactcttctcaagtaaaagccatcacatccattgttaaagcatatgggtggcatgaagttgttcttatatatgaagacacagaatatggaaatggtttgattccctatataattgatgcctttcaacaaattgacaccagggttccttacagaagtgtcatttccccatcatccagtcgcttaaacattttgaaaaagcttatcaagttaatggcaatgcagacgagggtattcttggtgcacatgactccttcacttggttctaaactctttttacttgcaaaagatgcaggcatgatgagtgaagggtatgcttggatcataactgatggattatcatctgggttacatccactggacggaaaggtcattgattcaatggaaggtgtggtgggcgtaacgccctatgtaccaatgtcaacaggtcttgatgactttgagatgagatggaaacaaagcactattgggactacaaagaagactcattctaagataagcatatttggcttatgggcttatgacacagtttgggcattagctaaggctgtagaactcgttgagttgcaggcaaattattccagtgctttaaagaacaataataaagggaaaagcacaggtggaatattgagccaaattggtgtgtctaaatcaggtccaaggcttctccaaacattgctgaggaccagatttgaaggcttaagtgggagatttagattgattgatcaacaatttcaacctgcagcctttaaaattttcaatgtgataagtaagagggagagagtgattggatattggacccccaacaaagaatcatttgatgatttagttcaatctggtatgttaacaaattactcgagtacttctattgccatagatgatcattgtgagtttatcattaaagtacctatatggcctggaaacaccagtactccaccaaagggttgggatatacctatatctggtaaaaagttgaggattggtgtacctgctgttacacctgacagttttagtgaatttatgaagatagaatggtttcctcacaccaataagccgaaaagcttctcagggttctcgtatgatgtcttccttgcagccttagaaagagtgccatttgcacttccacacaagttcattccattcaccaatggttcatcaagagaggctgcagggacttatgacgatcttctttaccagattaagttcaatgtgagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

559

Amino Acids

61.9

Weight (kDa)

9.05

Isoelectric Point (pI)

32.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006930)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31990 FvH4_4g31991
prunus_persica	Prupe.1G094800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0404041 RchiOBHm_Chr4g0404051 RchiOBHm_Chr4g0404091
rosa_laevigata	RLG00000008926 RLG00000008930 RLG00000008933
rosa_multiflora	Rmu_co8105392.1_g000001 Rmu_co8272517.1_g000001 Rmu_sc0001999.1_g000001 Rmu_sc0003483.1_g000002 Rmu_sc0006579.1_g000005 Rmu_sc0009977.1_g000001 Rmu_sc0020288.1_g000002
rosa_roxburghii	Rroxscaffold_5G00348610
rosa_rugosa	Rorug04G0046800
rosa_samantha	Rh4AG121900 Rh4AG122500 Rh4BG115600 Rh4BG115700 Rh4CG130900 Rh4CG131000 Rh4DG115800
rosa_wichuraiana	Rw4G009970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	830
Acc36I	ACCTGC	2 cut(s)	1210, 1459
AclWI	GGATC	1 cut(s)	791
AcsI	RAATTY	3 cut(s)	197, 1215, 1478
AfaI	GTAC	7 cut(s)	20, 148, 876, 1324, 1368, 1393, 1449
AfiI	CCNNNNNNNGG	4 cut(s)	722, 824, 1403, 1424
AflII	CTTAAG	1 cut(s)	1162
AgsI	TTSAA	8 cut(s)	590, 658, 843, 1157, 1199, 1222, 1295, 1669
AjnI	CCWGG	3 cut(s)	141, 602, 1378
AluBI	AGCT	9 cut(s)	77, 232, 287, 320, 350, 458, 664, 1004, 1524
AluI	AGCT	9 cut(s)	77, 232, 287, 320, 350, 458, 664, 1004, 1524
Alw21I	GWGCWC	1 cut(s)	708
Alw26I	GTCTC	1 cut(s)	429
Alw44I	GTGCAC	1 cut(s)	704
AlwI	GGATC	1 cut(s)	791
Ama87I	CYCGRG	1 cut(s)	1318
AoxI	GGCC	1 cut(s)	1376
ApaLI	GTGCAC	1 cut(s)	704
ApeKI	GCWGC	6 cut(s)	174, 275, 284, 1205, 1556, 1628
ApoI	RAATTY	3 cut(s)	197, 1215, 1478
Asp700I	GAANNNNTTC	4 cut(s)	440, 525, 1497, 1523
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	4 cut(s)	329, 1118, 1146, 1260
AsuHPI	GGTGA	2 cut(s)	95, 1597
AvaI	CYCGRG	1 cut(s)	1318
AvaII	GGWCC	4 cut(s)	329, 1118, 1146, 1260
BaeGI	GKGCMC	1 cut(s)	708
BaeI	ACNNNNGTAYC	2 cut(s)	138, 171
BarI	GAAGNNNNNNTAC	2 cut(s)	1532, 1564
BbsI	GAAGAC	4 cut(s)	167, 546, 950, 1540
Bbv12I	GWGCWC	1 cut(s)	708
BbvCI	CCTCAGC	1 cut(s)	1142
BbvI	GCAGC	6 cut(s)	161, 287, 296, 1217, 1568, 1615
BccI	CCATC	5 cut(s)	83, 494, 640, 788, 906
BceAI	ACGGC	1 cut(s)	180
BciT130I	CCWGG	3 cut(s)	143, 604, 1380
BclI	TGATCA	2 cut(s)	1186, 1342
BcoDI	GTCTC	1 cut(s)	429
BfaI	CTAG	2 cut(s)	207, 255
BfmI	CTRYAG	4 cut(s)	273, 1011, 1203, 1629
BfoI	RGCGCY	1 cut(s)	191
BfrI	CTTAAG	1 cut(s)	1162
BfuAI	ACCTGC	2 cut(s)	1210, 1459
BisI	GCNGC	6 cut(s)	175, 276, 285, 1206, 1557, 1629
BlsI	GCNGC	6 cut(s)	176, 277, 286, 1207, 1558, 1630
BmcAI	AGTACT	2 cut(s)	1324, 1393
Bme1390I	CCNGG	3 cut(s)	143, 604, 1380
Bme18I	GGWCC	4 cut(s)	329, 1118, 1146, 1260
BmeT110I	CYCGRG	1 cut(s)	1318
BmgT120I	GGNCC	4 cut(s)	329, 1118, 1146, 1260
BmiI	GGNNCC	4 cut(s)	94, 331, 609, 1262
BmrFI	CCNGG	3 cut(s)	143, 604, 1380
BmsI	GCATC	2 cut(s)	571, 742
BpiI	GAAGAC	4 cut(s)	167, 546, 950, 1540
Bpu10I	CCTNAGC	2 cut(s)	1005, 1142
BpuEI	CTTGAG	1 cut(s)	459
BsaBI	GATNNNNATC	1 cut(s)	802
BsaJI	CCNNGG	4 cut(s)	142, 183, 603, 1121
BsaWI	WCCGGW	2 cut(s)	95, 151
BsaXI	ACNNNNNCTCC	2 cut(s)	1378, 1408
Bsc4I	CCNNNNNNNGG	4 cut(s)	722, 824, 1403, 1424
Bse1I	ACTGG	4 cut(s)	639, 825, 1044, 1389
Bse3DI	GCAATG	2 cut(s)	687, 1136
Bse8I	GATNNNNATC	1 cut(s)	802
BseBI	CCWGG	3 cut(s)	143, 604, 1380
BseDI	CCNNGG	4 cut(s)	142, 183, 603, 1121
BseGI	GGATG	4 cut(s)	469, 491, 635, 814
BseJI	GATNNNNATC	1 cut(s)	802
BseLI	CCNNNNNNNGG	4 cut(s)	722, 824, 1403, 1424
BseMI	GCAATG	2 cut(s)	687, 1136
BseMII	CTCAG	3 cut(s)	87, 1133, 1542
BseNI	ACTGG	4 cut(s)	639, 825, 1044, 1389
BseSI	GKGCMC	1 cut(s)	708
BseXI	GCAGC	6 cut(s)	161, 287, 296, 1217, 1568, 1615
BshFI	GGCC	1 cut(s)	1378
BsiHKAI	GWGCWC	1 cut(s)	708
BsiHKCI	CYCGRG	1 cut(s)	1318
BsiSI	CCGG	2 cut(s)	96, 152
BslFI	GGGAC	3 cut(s)	315, 946, 1648
BslI	CCNNNNNNNGG	4 cut(s)	722, 824, 1403, 1424
BsmAI	GTCTC	1 cut(s)	429
BsmFI	GGGAC	3 cut(s)	315, 946, 1648
BsnI	GGCC	1 cut(s)	1378
BsoBI	CYCGRG	1 cut(s)	1318
Bsp1286I	GDGCHC	1 cut(s)	708
Bsp143I	GATC	4 cut(s)	783, 1186, 1342, 1645
Bsp19I	CCATGG	1 cut(s)	183
BspANI	GGCC	1 cut(s)	1378
BspCNI	CTCAG	3 cut(s)	86, 1134, 1541
BspLI	GGNNCC	4 cut(s)	94, 331, 609, 1262
BspMAI	CTGCAG	3 cut(s)	277, 1207, 1633
BspMI	ACCTGC	2 cut(s)	1210, 1459
BspPI	GGATC	1 cut(s)	791
BspTI	CTTAAG	1 cut(s)	1162
BsrDI	GCAATG	2 cut(s)	687, 1136
BsrI	ACTGG	4 cut(s)	639, 825, 1044, 1389
BssECI	CCNNGG	4 cut(s)	142, 183, 603, 1121
BssMI	GATC	4 cut(s)	783, 1186, 1342, 1645
BssT1I	CCWWGG	2 cut(s)	183, 1121
Bst2UI	CCWGG	3 cut(s)	143, 604, 1380
Bst4CI	ACNGT	4 cut(s)	244, 440, 991, 1469
Bst6I	CTCTTC	2 cut(s)	303, 475
BstAFI	CTTAAG	1 cut(s)	1162
BstAPI	GCANNNNNTGC	1 cut(s)	752
BstC8I	GCNNGC	3 cut(s)	318, 757, 1032
BstDEI	CTNAG	7 cut(s)	73, 351, 954, 1005, 1142, 1528, 1561
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	4 cut(s)	469, 491, 635, 814
BstH2I	RGCGCY	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	4 cut(s)	786, 1189, 1345, 1648
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	4 cut(s)	783, 1186, 1342, 1645
BstMWI	GCNNNNNNNGC	5 cut(s)	212, 281, 284, 752, 969
BstNI	CCWGG	3 cut(s)	143, 604, 1380
BstSCI	CCNGG	3 cut(s)	141, 602, 1378
BstSFI	CTRYAG	4 cut(s)	273, 1011, 1203, 1629
BstSLI	GKGCMC	1 cut(s)	708
BstV1I	GCAGC	6 cut(s)	161, 287, 296, 1217, 1568, 1615
BstV2I	GAAGAC	4 cut(s)	167, 546, 950, 1540
BstXI	CCANNNNNNTGG	1 cut(s)	1407
BsuRI	GGCC	1 cut(s)	1378
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	4 cut(s)	469, 491, 635, 814
BtsIMutI	CAGTG	2 cut(s)	818, 1051
BveI	ACCTGC	2 cut(s)	1210, 1459
Cac8I	GCNNGC	3 cut(s)	318, 757, 1032
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	4 cut(s)	329, 1118, 1146, 1260
Csp6I	GTAC	7 cut(s)	19, 147, 875, 1323, 1367, 1392, 1448
CviAII	CATG	5 cut(s)	37, 184, 518, 709, 760
CviQI	GTAC	7 cut(s)	19, 147, 875, 1323, 1367, 1392, 1448
DdeI	CTNAG	7 cut(s)	73, 351, 954, 1005, 1142, 1528, 1561
DpnI	GATC	4 cut(s)	785, 1188, 1344, 1647
DpnII	GATC	4 cut(s)	783, 1186, 1342, 1645
DraI	TTTAAA	2 cut(s)	1053, 1213
DrdI	GACNNNNNNGTC	1 cut(s)	830
DseDI	GACNNNNNNGTC	1 cut(s)	830
Eam1104I	CTCTTC	2 cut(s)	303, 475
EarI	CTCTTC	2 cut(s)	303, 475
Eco130I	CCWWGG	2 cut(s)	183, 1121
Eco47I	GGWCC	4 cut(s)	329, 1118, 1146, 1260
Eco88I	CYCGRG	1 cut(s)	1318
EcoO109I	RGGNCCY	1 cut(s)	329
EcoRI	GAATTC	1 cut(s)	197
EcoRII	CCWGG	3 cut(s)	141, 602, 1378
EcoT14I	CCWWGG	2 cut(s)	183, 1121
ErhI	CCWWGG	2 cut(s)	183, 1121
FaeI	CATG	5 cut(s)	40, 187, 521, 712, 763
FalI	AAGNNNNNCTT	4 cut(s)	403, 435, 513, 545
FaqI	GGGAC	3 cut(s)	315, 946, 1648
FatI	CATG	5 cut(s)	36, 183, 517, 708, 759
FauNDI	CATATG	1 cut(s)	508
FbaI	TGATCA	2 cut(s)	1186, 1342
Fnu4HI	GCNGC	6 cut(s)	175, 276, 285, 1206, 1557, 1629
FokI	GGATG	4 cut(s)	476, 478, 622, 801
Fsp4HI	GCNGC	6 cut(s)	175, 276, 285, 1206, 1557, 1629
FspBI	CTAG	2 cut(s)	207, 255
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	6 cut(s)	175, 276, 285, 1206, 1557, 1629
HaeII	RGCGCY	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	1378
HapII	CCGG	2 cut(s)	96, 152
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	5 cut(s)	40, 187, 521, 712, 763
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HincII	GTYRAC	2 cut(s)	885, 1308
HindII	GTYRAC	2 cut(s)	885, 1308
HindIII	AAGCTT	2 cut(s)	662, 1522
HinfI	GANTC	8 cut(s)	235, 251, 467, 565, 712, 839, 946, 1274
HpaI	GTTAAC	1 cut(s)	1308
HpaII	CCGG	2 cut(s)	96, 152
HphI	GGTGA	2 cut(s)	95, 1597
Hpy166II	GTNNAC	4 cut(s)	706, 885, 1308, 1448
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	6 cut(s)	25, 137, 451, 461, 893, 1620
Hpy8I	GTNNAC	4 cut(s)	706, 885, 1308, 1448
HpyAV	CCTTC	6 cut(s)	241, 426, 726, 764, 842, 1151
HpyCH4III	ACNGT	4 cut(s)	244, 440, 991, 1469
HpyF10VI	GCNNNNNNNGC	5 cut(s)	212, 281, 284, 752, 969
HpyF3I	CTNAG	7 cut(s)	73, 351, 954, 1005, 1142, 1528, 1561
Hsp92II	CATG	5 cut(s)	40, 187, 521, 712, 763
HspAI	GCGC	1 cut(s)	188
Ksp22I	TGATCA	2 cut(s)	1186, 1342
KspAI	GTTAAC	1 cut(s)	1308
Kzo9I	GATC	4 cut(s)	783, 1186, 1342, 1645
Lsp1109I	GCAGC	6 cut(s)	161, 287, 296, 1217, 1568, 1615
LweI	GCATC	2 cut(s)	571, 742
MaeI	CTAG	2 cut(s)	207, 255
MaeIII	GTNAC	3 cut(s)	810, 862, 1456
MalI	GATC	4 cut(s)	785, 1188, 1344, 1647
MboI	GATC	4 cut(s)	783, 1186, 1342, 1645
MhlI	GDGCHC	1 cut(s)	708
MlyI	GAGTC	3 cut(s)	461, 706, 940
MmeI	TCCRAC	1 cut(s)	452
MnlI	CCTC	8 cut(s)	32, 304, 684, 1137, 1230, 1431, 1512, 1618
MroXI	GAANNNNTTC	4 cut(s)	440, 525, 1497, 1523
MslI	CAYNNNNRTG	2 cut(s)	182, 511
MspA1I	CMGCKG	1 cut(s)	77
MspCI	CTTAAG	1 cut(s)	1162
MspI	CCGG	2 cut(s)	96, 152
MspR9I	CCNGG	3 cut(s)	143, 604, 1380
MvaI	CCWGG	3 cut(s)	143, 604, 1380
MwoI	GCNNNNNNNGC	5 cut(s)	212, 281, 284, 752, 969
NcoI	CCATGG	1 cut(s)	183
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	4 cut(s)	783, 1186, 1342, 1645
NlaIII	CATG	5 cut(s)	40, 187, 521, 712, 763
NlaIV	GGNNCC	4 cut(s)	94, 331, 609, 1262
PaeR7I	CTCGAG	1 cut(s)	1318
PdmI	GAANNNNTTC	4 cut(s)	440, 525, 1497, 1523
PfeI	GAWTC	5 cut(s)	235, 251, 565, 839, 1274
PkrI	GCNGC	6 cut(s)	176, 277, 286, 1207, 1558, 1630
PleI	GAGTC	3 cut(s)	461, 706, 940
PpsI	GAGTC	3 cut(s)	461, 706, 940
PpuMI	RGGWCCY	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	329
Psp6I	CCWGG	3 cut(s)	141, 602, 1378
PspGI	CCWGG	3 cut(s)	141, 602, 1378
PspN4I	GGNNCC	4 cut(s)	94, 331, 609, 1262
PspPI	GGNCC	4 cut(s)	329, 1118, 1146, 1260
PspPPI	RGGWCCY	1 cut(s)	329
PspXI	VCTCGAGB	1 cut(s)	1318
PstI	CTGCAG	3 cut(s)	277, 1207, 1633
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	7 cut(s)	20, 148, 876, 1324, 1368, 1393, 1449
RsaNI	GTAC	7 cut(s)	19, 147, 875, 1323, 1367, 1392, 1448
RseI	CAYNNNNRTG	2 cut(s)	182, 511
SatI	GCNGC	6 cut(s)	175, 276, 285, 1206, 1557, 1629
Sau3AI	GATC	4 cut(s)	783, 1186, 1342, 1645
Sau96I	GGNCC	4 cut(s)	329, 1118, 1146, 1260
ScaI	AGTACT	2 cut(s)	1324, 1393
SchI	GAGTC	3 cut(s)	461, 706, 940
ScrFI	CCNGG	3 cut(s)	143, 604, 1380
SduI	GDGCHC	1 cut(s)	708
SfaNI	GCATC	2 cut(s)	571, 742
SfcI	CTRYAG	4 cut(s)	273, 1011, 1203, 1629
Sfr274I	CTCGAG	1 cut(s)	1318
SinI	GGWCC	4 cut(s)	329, 1118, 1146, 1260
SlaI	CTCGAG	1 cut(s)	1318
SmiMI	CAYNNNNRTG	2 cut(s)	182, 511
SmlI	CTYRAG	3 cut(s)	474, 1162, 1318
SmoI	CTYRAG	3 cut(s)	474, 1162, 1318
SspI	AATATT	1 cut(s)	1089
SspMI	CTAG	2 cut(s)	207, 255
StyD4I	CCNGG	3 cut(s)	141, 602, 1378
StyI	CCWWGG	2 cut(s)	183, 1121
TaaI	ACNGT	4 cut(s)	244, 440, 991, 1469
TaqI	TCGA	2 cut(s)	223, 1319
TatI	WGTACW	2 cut(s)	1322, 1391
TfiI	GAWTC	5 cut(s)	235, 251, 565, 839, 1274
TscAI	CASTG	2 cut(s)	825, 1051
TseI	GCWGC	6 cut(s)	174, 275, 284, 1205, 1556, 1628
TspDTI	ATGAA	8 cut(s)	25, 321, 449, 534, 552, 1499, 1585, 1605
TspGWI	ACGGA	1 cut(s)	840
TspRI	CASTG	2 cut(s)	825, 1051
Vha464I	CTTAAG	1 cut(s)	1162
VneI	GTGCAC	1 cut(s)	704
VpaK11BI	GGWCC	4 cut(s)	329, 1118, 1146, 1260
XapI	RAATTY	3 cut(s)	197, 1215, 1478
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1404
XhoI	CTCGAG	1 cut(s)	1318
XmnI	GAANNNNTTC	4 cut(s)	440, 525, 1497, 1523
XspI	CTAG	2 cut(s)	207, 255
ZrmI	AGTACT	2 cut(s)	1324, 1393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.