Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009977.1

Orthogroup ID

OG0006930

Physical Location & Seq

Genomic Coordinates Forward (+)

225 .. 2406

Gene Structure 2182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009977.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

atggcaaacaacaatcagtacctcctgataatcttcatgttattagatgtttgcctaatctatggcaactcctcagctgttggtgaagatggaaccggaagaaaatcacagcaaatggtaaatgtgggtgtaattcttgacctgggtactccggttgggaagacggctcaacgctgcatatccatggcgctctcggaattctatgctagaaatgccaactatcgaacaaagctgaatcttactgtgaaggattctaggaatgatgttgtttctgcagcaacagcagctctggatgactcttctcaagtaaaaaccatcacatccattgttaaagcatatgggtggcatgaagttgttcttatatatgaagacacagaatatggaaatggtttgattccctatataattgatgcctttcaacaaattgacaccagggttccttacagaagtgtcatttccccatcatccagtcgcttaaacattttgaaaaagcttatcaagttaatggcaatgcagacgagggtattcttggtgcacatgactccttcacttggttctaaactctttttacttgcaaaaggtgcaggcatgatgagtgaagggtatgcttggatcataactgatggattatcatctgggttacatccactggacggaaaggtcattgattcaatggaaggtgtggtgggcgtaacgccctatgtaccaatgtcaacaggtcttgatgactttgagatgagatggaaacaaagcactattgggactacaaagaagactcattctaagataagcatatttggcttatgggcttatgacacagtttgggcattagctaaggctgtagaactcgttgagttacaggcaaattattccagtgctttaaagaacaataataaagggaaaagctcaggtggagtattgagccaaattggtgtgtctaaatcaggtccaaggcttctccaaacattgctgaggaccagatttgaaggcttaagtgggagatttagattgattgatcaacaatttcaacctgcagcctttaaaattttcaatgtgataagtaagagggagagagtgattggatattggacccccaacaaagaatcatttgatgatttagttcaatctggtatgttaacaaattactcgagtacttctgttgccatagatgatcatcgtgagtttatcattaaagtacctatatggcctggaaacaccagtaatccaccaaagggttgggatatacctgtaactggtaaaaagttgaggattggtgtacctgtaacatctgacagttgttatgaatttatgaagatagaatggttccctcacaccaatgagcctaagagcttctcagggttctcgtatgatgtcttccttgcagccttagaaagagtgccatttgcacttccacacaagttcattccattcaccaatggttcatcaagagaggctgcagggacttatgacgatcttctttaccagattaagttcaatgtgagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

501

Amino Acids

55.6

Weight (kDa)

9.07

Isoelectric Point (pI)

33.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006930)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31990 FvH4_4g31991
prunus_persica	Prupe.1G094800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0404041 RchiOBHm_Chr4g0404051 RchiOBHm_Chr4g0404091
rosa_laevigata	RLG00000008926 RLG00000008930 RLG00000008933
rosa_multiflora	Rmu_co8105392.1_g000001 Rmu_co8272517.1_g000001 Rmu_sc0001999.1_g000001 Rmu_sc0003483.1_g000002 Rmu_sc0006579.1_g000005 Rmu_sc0009977.1_g000001 Rmu_sc0020288.1_g000002
rosa_roxburghii	Rroxscaffold_5G00348610
rosa_rugosa	Rorug04G0046800
rosa_samantha	Rh4AG121900 Rh4AG122500 Rh4BG115600 Rh4BG115700 Rh4CG130900 Rh4CG131000 Rh4DG115800
rosa_wichuraiana	Rw4G009970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	659
Acc36I	ACCTGC	1 cut(s)	1039
AclWI	GGATC	1 cut(s)	620
AcsI	RAATTY	3 cut(s)	197, 1044, 1304
AfaI	GTAC	6 cut(s)	20, 148, 705, 1153, 1197, 1278
AfiI	CCNNNNNNNGG	4 cut(s)	551, 653, 1232, 1253
AflII	CTTAAG	1 cut(s)	991
AgsI	TTSAA	8 cut(s)	419, 487, 672, 986, 1028, 1051, 1124, 1495
AjnI	CCWGG	3 cut(s)	141, 431, 1207
AluBI	AGCT	7 cut(s)	77, 232, 287, 493, 833, 906, 1350
AluI	AGCT	7 cut(s)	77, 232, 287, 493, 833, 906, 1350
Alw21I	GWGCWC	1 cut(s)	537
Alw44I	GTGCAC	1 cut(s)	533
AlwI	GGATC	1 cut(s)	620
Ama87I	CYCGRG	1 cut(s)	1147
AoxI	GGCC	1 cut(s)	1205
ApaLI	GTGCAC	1 cut(s)	533
ApeKI	GCWGC	6 cut(s)	174, 275, 284, 1034, 1382, 1454
ApoI	RAATTY	3 cut(s)	197, 1044, 1304
Asp700I	GAANNNNTTC	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	3 cut(s)	947, 975, 1089
AsuHPI	GGTGA	2 cut(s)	95, 1423
AvaI	CYCGRG	1 cut(s)	1147
AvaII	GGWCC	3 cut(s)	947, 975, 1089
BaeGI	GKGCMC	1 cut(s)	537
BaeI	ACNNNNGTAYC	2 cut(s)	138, 171
BarI	GAAGNNNNNNTAC	2 cut(s)	1358, 1390
BbsI	GAAGAC	4 cut(s)	167, 375, 779, 1366
Bbv12I	GWGCWC	1 cut(s)	537
BbvCI	CCTCAGC	2 cut(s)	73, 971
BbvI	GCAGC	6 cut(s)	161, 287, 296, 1046, 1394, 1441
BccI	CCATC	5 cut(s)	83, 323, 469, 617, 735
BceAI	ACGGC	1 cut(s)	180
BciT130I	CCWGG	3 cut(s)	143, 433, 1209
BclI	TGATCA	2 cut(s)	1015, 1171
BfaI	CTAG	2 cut(s)	207, 255
BfmI	CTRYAG	4 cut(s)	273, 840, 1032, 1455
BfoI	RGCGCY	1 cut(s)	191
BfrI	CTTAAG	1 cut(s)	991
BfuAI	ACCTGC	1 cut(s)	1039
BisI	GCNGC	6 cut(s)	175, 276, 285, 1035, 1383, 1455
BlsI	GCNGC	6 cut(s)	176, 277, 286, 1036, 1384, 1456
BmcAI	AGTACT	1 cut(s)	1153
Bme1390I	CCNGG	3 cut(s)	143, 433, 1209
Bme18I	GGWCC	3 cut(s)	947, 975, 1089
BmeT110I	CYCGRG	1 cut(s)	1147
BmgT120I	GGNCC	3 cut(s)	947, 975, 1089
BmiI	GGNNCC	4 cut(s)	94, 438, 1091, 1325
BmrFI	CCNGG	3 cut(s)	143, 433, 1209
BmsI	GCATC	1 cut(s)	400
BpiI	GAAGAC	4 cut(s)	167, 375, 779, 1366
Bpu10I	CCTNAGC	4 cut(s)	73, 834, 907, 971
BpuEI	CTTGAG	1 cut(s)	288
BsaBI	GATNNNNATC	2 cut(s)	631, 1173
BsaJI	CCNNGG	4 cut(s)	142, 183, 432, 950
BsaWI	WCCGGW	2 cut(s)	95, 151
Bsc4I	CCNNNNNNNGG	4 cut(s)	551, 653, 1232, 1253
Bse1I	ACTGG	5 cut(s)	468, 654, 873, 1218, 1258
Bse3DI	GCAATG	2 cut(s)	516, 965
Bse8I	GATNNNNATC	2 cut(s)	631, 1173
BseBI	CCWGG	3 cut(s)	143, 433, 1209
BseDI	CCNNGG	4 cut(s)	142, 183, 432, 950
BseGI	GGATG	4 cut(s)	298, 320, 464, 643
BseJI	GATNNNNATC	2 cut(s)	631, 1173
BseLI	CCNNNNNNNGG	4 cut(s)	551, 653, 1232, 1253
BseMI	GCAATG	2 cut(s)	516, 965
BseMII	CTCAG	4 cut(s)	87, 921, 962, 1368
BseNI	ACTGG	5 cut(s)	468, 654, 873, 1218, 1258
BseRI	GAGGAG	1 cut(s)	61
BseSI	GKGCMC	1 cut(s)	537
BseXI	GCAGC	6 cut(s)	161, 287, 296, 1046, 1394, 1441
BsgI	GTGCAG	1 cut(s)	603
BshFI	GGCC	1 cut(s)	1207
BsiHKAI	GWGCWC	1 cut(s)	537
BsiHKCI	CYCGRG	1 cut(s)	1147
BsiSI	CCGG	2 cut(s)	96, 152
BslFI	GGGAC	2 cut(s)	775, 1474
BslI	CCNNNNNNNGG	4 cut(s)	551, 653, 1232, 1253
BsmFI	GGGAC	2 cut(s)	775, 1474
BsnI	GGCC	1 cut(s)	1207
BsoBI	CYCGRG	1 cut(s)	1147
Bsp1286I	GDGCHC	1 cut(s)	537
Bsp143I	GATC	4 cut(s)	612, 1015, 1171, 1471
Bsp19I	CCATGG	1 cut(s)	183
BspANI	GGCC	1 cut(s)	1207
BspCNI	CTCAG	4 cut(s)	86, 920, 963, 1367
BspLI	GGNNCC	4 cut(s)	94, 438, 1091, 1325
BspMAI	CTGCAG	3 cut(s)	277, 1036, 1459
BspMI	ACCTGC	1 cut(s)	1039
BspPI	GGATC	1 cut(s)	620
BspTI	CTTAAG	1 cut(s)	991
BsrDI	GCAATG	2 cut(s)	516, 965
BsrI	ACTGG	5 cut(s)	468, 654, 873, 1218, 1258
BssECI	CCNNGG	4 cut(s)	142, 183, 432, 950
BssMI	GATC	4 cut(s)	612, 1015, 1171, 1471
BssT1I	CCWWGG	2 cut(s)	183, 950
Bst2UI	CCWGG	3 cut(s)	143, 433, 1209
Bst4CI	ACNGT	3 cut(s)	244, 820, 1295
Bst6I	CTCTTC	1 cut(s)	304
BstAFI	CTTAAG	1 cut(s)	991
BstAPI	GCANNNNNTGC	1 cut(s)	581
BstC8I	GCNNGC	1 cut(s)	586
BstDEI	CTNAG	8 cut(s)	73, 783, 834, 907, 971, 1344, 1354, 1387
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	4 cut(s)	298, 320, 464, 643
BstH2I	RGCGCY	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	4 cut(s)	615, 1018, 1174, 1474
BstMBI	GATC	4 cut(s)	612, 1015, 1171, 1471
BstMWI	GCNNNNNNNGC	5 cut(s)	212, 281, 284, 581, 798
BstNI	CCWGG	3 cut(s)	143, 433, 1209
BstSCI	CCNGG	3 cut(s)	141, 431, 1207
BstSFI	CTRYAG	4 cut(s)	273, 840, 1032, 1455
BstSLI	GKGCMC	1 cut(s)	537
BstV1I	GCAGC	6 cut(s)	161, 287, 296, 1046, 1394, 1441
BstV2I	GAAGAC	4 cut(s)	167, 375, 779, 1366
BstXI	CCANNNNNNTGG	1 cut(s)	1236
BsuRI	GGCC	1 cut(s)	1207
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	4 cut(s)	298, 320, 464, 643
BtsIMutI	CAGTG	2 cut(s)	647, 880
BveI	ACCTGC	1 cut(s)	1039
Cac8I	GCNNGC	1 cut(s)	586
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	3 cut(s)	947, 975, 1089
Csp6I	GTAC	6 cut(s)	19, 147, 704, 1152, 1196, 1277
CviAII	CATG	5 cut(s)	37, 184, 347, 538, 589
CviQI	GTAC	6 cut(s)	19, 147, 704, 1152, 1196, 1277
DdeI	CTNAG	8 cut(s)	73, 783, 834, 907, 971, 1344, 1354, 1387
DpnI	GATC	4 cut(s)	614, 1017, 1173, 1473
DpnII	GATC	4 cut(s)	612, 1015, 1171, 1471
DraI	TTTAAA	2 cut(s)	882, 1042
DrdI	GACNNNNNNGTC	1 cut(s)	659
DseDI	GACNNNNNNGTC	1 cut(s)	659
Eam1104I	CTCTTC	1 cut(s)	304
EarI	CTCTTC	1 cut(s)	304
Eco130I	CCWWGG	2 cut(s)	183, 950
Eco47I	GGWCC	3 cut(s)	947, 975, 1089
Eco88I	CYCGRG	1 cut(s)	1147
EcoRI	GAATTC	1 cut(s)	197
EcoRII	CCWGG	3 cut(s)	141, 431, 1207
EcoT14I	CCWWGG	2 cut(s)	183, 950
ErhI	CCWWGG	2 cut(s)	183, 950
FaeI	CATG	5 cut(s)	40, 187, 350, 541, 592
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FaqI	GGGAC	2 cut(s)	775, 1474
FatI	CATG	5 cut(s)	36, 183, 346, 537, 588
FauNDI	CATATG	1 cut(s)	337
FbaI	TGATCA	2 cut(s)	1015, 1171
Fnu4HI	GCNGC	6 cut(s)	175, 276, 285, 1035, 1383, 1455
FokI	GGATG	4 cut(s)	305, 307, 451, 630
Fsp4HI	GCNGC	6 cut(s)	175, 276, 285, 1035, 1383, 1455
FspBI	CTAG	2 cut(s)	207, 255
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	6 cut(s)	175, 276, 285, 1035, 1383, 1455
HaeII	RGCGCY	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	1207
HapII	CCGG	2 cut(s)	96, 152
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	5 cut(s)	40, 187, 350, 541, 592
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HincII	GTYRAC	2 cut(s)	714, 1137
HindII	GTYRAC	2 cut(s)	714, 1137
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	8 cut(s)	235, 251, 296, 394, 541, 668, 775, 1103
HpaI	GTTAAC	1 cut(s)	1137
HpaII	CCGG	2 cut(s)	96, 152
HphI	GGTGA	2 cut(s)	95, 1423
Hpy166II	GTNNAC	4 cut(s)	535, 714, 1137, 1277
Hpy188I	TCNGA	2 cut(s)	196, 1291
Hpy188III	TCNNGA	6 cut(s)	25, 137, 290, 722, 1178, 1446
Hpy8I	GTNNAC	4 cut(s)	535, 714, 1137, 1277
HpyAV	CCTTC	5 cut(s)	241, 555, 593, 671, 980
HpyCH4III	ACNGT	3 cut(s)	244, 820, 1295
HpyF10VI	GCNNNNNNNGC	5 cut(s)	212, 281, 284, 581, 798
HpyF3I	CTNAG	8 cut(s)	73, 783, 834, 907, 971, 1344, 1354, 1387
Hsp92II	CATG	5 cut(s)	40, 187, 350, 541, 592
HspAI	GCGC	1 cut(s)	188
Ksp22I	TGATCA	2 cut(s)	1015, 1171
KspAI	GTTAAC	1 cut(s)	1137
Kzo9I	GATC	4 cut(s)	612, 1015, 1171, 1471
Lsp1109I	GCAGC	6 cut(s)	161, 287, 296, 1046, 1394, 1441
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	2 cut(s)	207, 255
MaeIII	GTNAC	5 cut(s)	639, 691, 855, 1249, 1282
MalI	GATC	4 cut(s)	614, 1017, 1173, 1473
MboI	GATC	4 cut(s)	612, 1015, 1171, 1471
MhlI	GDGCHC	1 cut(s)	537
MlyI	GAGTC	3 cut(s)	290, 535, 769
MnlI	CCTC	8 cut(s)	32, 82, 513, 966, 1059, 1260, 1338, 1444
MroXI	GAANNNNTTC	1 cut(s)	354
MslI	CAYNNNNRTG	3 cut(s)	182, 340, 1335
MspA1I	CMGCKG	1 cut(s)	77
MspCI	CTTAAG	1 cut(s)	991
MspI	CCGG	2 cut(s)	96, 152
MspR9I	CCNGG	3 cut(s)	143, 433, 1209
MvaI	CCWGG	3 cut(s)	143, 433, 1209
MwoI	GCNNNNNNNGC	5 cut(s)	212, 281, 284, 581, 798
NcoI	CCATGG	1 cut(s)	183
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	4 cut(s)	612, 1015, 1171, 1471
NlaIII	CATG	5 cut(s)	40, 187, 350, 541, 592
NlaIV	GGNNCC	4 cut(s)	94, 438, 1091, 1325
PaeR7I	CTCGAG	1 cut(s)	1147
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	5 cut(s)	235, 251, 394, 668, 1103
PkrI	GCNGC	6 cut(s)	176, 277, 286, 1036, 1384, 1456
PleI	GAGTC	3 cut(s)	290, 535, 769
PpsI	GAGTC	3 cut(s)	290, 535, 769
Psp6I	CCWGG	3 cut(s)	141, 431, 1207
PspGI	CCWGG	3 cut(s)	141, 431, 1207
PspN4I	GGNNCC	4 cut(s)	94, 438, 1091, 1325
PspPI	GGNCC	3 cut(s)	947, 975, 1089
PspXI	VCTCGAGB	1 cut(s)	1147
PstI	CTGCAG	3 cut(s)	277, 1036, 1459
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	6 cut(s)	20, 148, 705, 1153, 1197, 1278
RsaNI	GTAC	6 cut(s)	19, 147, 704, 1152, 1196, 1277
RseI	CAYNNNNRTG	3 cut(s)	182, 340, 1335
SatI	GCNGC	6 cut(s)	175, 276, 285, 1035, 1383, 1455
Sau3AI	GATC	4 cut(s)	612, 1015, 1171, 1471
Sau96I	GGNCC	3 cut(s)	947, 975, 1089
ScaI	AGTACT	1 cut(s)	1153
SchI	GAGTC	3 cut(s)	290, 535, 769
ScrFI	CCNGG	3 cut(s)	143, 433, 1209
SduI	GDGCHC	1 cut(s)	537
SfaNI	GCATC	1 cut(s)	400
SfcI	CTRYAG	4 cut(s)	273, 840, 1032, 1455
Sfr274I	CTCGAG	1 cut(s)	1147
SinI	GGWCC	3 cut(s)	947, 975, 1089
SlaI	CTCGAG	1 cut(s)	1147
SmiMI	CAYNNNNRTG	3 cut(s)	182, 340, 1335
SmlI	CTYRAG	3 cut(s)	303, 991, 1147
SmoI	CTYRAG	3 cut(s)	303, 991, 1147
SspMI	CTAG	2 cut(s)	207, 255
StyD4I	CCNGG	3 cut(s)	141, 431, 1207
StyI	CCWWGG	2 cut(s)	183, 950
TaaI	ACNGT	3 cut(s)	244, 820, 1295
TaqI	TCGA	2 cut(s)	223, 1148
TatI	WGTACW	1 cut(s)	1151
TfiI	GAWTC	5 cut(s)	235, 251, 394, 668, 1103
TscAI	CASTG	2 cut(s)	654, 880
TseI	GCWGC	6 cut(s)	174, 275, 284, 1034, 1382, 1454
TspDTI	ATGAA	7 cut(s)	25, 363, 381, 1317, 1325, 1411, 1431
TspGWI	ACGGA	1 cut(s)	669
TspRI	CASTG	2 cut(s)	654, 880
Vha464I	CTTAAG	1 cut(s)	991
VneI	GTGCAC	1 cut(s)	533
VpaK11BI	GGWCC	3 cut(s)	947, 975, 1089
XapI	RAATTY	3 cut(s)	197, 1044, 1304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1233
XhoI	CTCGAG	1 cut(s)	1147
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	2 cut(s)	207, 255
ZrmI	AGTACT	1 cut(s)	1153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.