Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006930

Physical Location & Seq

Genomic Coordinates Forward (+)

18305816 .. 18314808

Gene Structure 8993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG115800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGAGGATTATCATAAAGCATTGTCTCAAGGAAGCAAAAATGGTGGTGTTGATGCTATCTTTGACGAAATCCCCTACGTGAAGCTCTTCCTCGCCAAGTATTCTGCTGGATACACTATGGTTGGACCAACCTACAAAACTGACGGATTTGGCTTTGCCTTCCCACTAGGCTCCCCTCTTGTTGCTTACTTTTCGAGGGCAATCTTGAAAGTGACTCAAGATCATGAGACAATGGAACAACTGCAACGGAAGTATTTCCCAGATGAATCCAAATGTCAAGATAAGAGTTCCACATTCTCTTCAGAAAATCCAAGTCTAAGCTTGTACAGCTTTGCAGGCCTGTTCATCACCACAGCGGTCATTTCAATTTCTTCATGCTCGATATCTATACTTTCCAAGTTCCTGTATAAACAGTGGCCTGCGTTGAATCCCATCCATGCAGAAGCCAGCTCACTCTTGTCAAAAATATCAAAGCATTTTCATCAAAACAAAGCAACTGATCAAAAGATAACTGCTTCATCTGCAACAAATGCTAGAGGTGGTGAAGCTTCACAGATGCTAGAGTGTTTCCACCAAGAACTAGACAATGTTCCAACAGACGAACATAAGGTGCTGTCCAGAGCAGTTAGCAGGCGTTTAGATGAAAGAGATTCGGAAATGAAGAGGATTGAAGAGGAGCAGAGAAGGATTAGGGAGGGCCATGAAGTGAGTTTGGCTCTTCTTCACAGGGCTGAACTTGATAAATTACTTAAGGTGCCTATGCAGGAGATCATAGCAGTGGAGATGGACAAGGCCATACAGAGGGCTGGGTTGTTACACTTGGGACCTTCTTTGGCTGCCCTGCTCGGAATGGCAGGTGAAACGAACAGAAGTATATCACAGTCGACAAACCAGGGGAATGAAGTTAATGCATCAACCAGTCTTCATGTAGCTACTATTGCTAATCTGGATTATGTGGCAAAGCCTGATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

324

Amino Acids

35.87

Weight (kDa)

6.27

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006930)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31990 FvH4_4g31991
prunus_persica	Prupe.1G094800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0404041 RchiOBHm_Chr4g0404051 RchiOBHm_Chr4g0404091
rosa_laevigata	RLG00000008926 RLG00000008930 RLG00000008933
rosa_multiflora	Rmu_co8105392.1_g000001 Rmu_co8272517.1_g000001 Rmu_sc0001999.1_g000001 Rmu_sc0003483.1_g000002 Rmu_sc0006579.1_g000005 Rmu_sc0009977.1_g000001 Rmu_sc0020288.1_g000002
rosa_roxburghii	Rroxscaffold_5G00348610
rosa_rugosa	Rorug04G0046800
rosa_samantha	Rh4AG121900 Rh4AG122500 Rh4BG115600 Rh4BG115700 Rh4CG130900 Rh4CG131000 Rh4DG115800
rosa_wichuraiana	Rw4G009970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	845
Acc36I	ACCTGC	1 cut(s)	845
AccB1I	GGYRCC	1 cut(s)	754
AccI	GTMKAC	1 cut(s)	884
AciI	CCGC	1 cut(s)	356
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	801
AflII	CTTAAG	1 cut(s)	749
AgsI	TTSAA	4 cut(s)	208, 366, 427, 671
AjnI	CCWGG	1 cut(s)	891
AluBI	AGCT	6 cut(s)	85, 321, 330, 450, 548, 932
AluI	AGCT	6 cut(s)	85, 321, 330, 450, 548, 932
Alw26I	GTCTC	2 cut(s)	30, 221
AoxI	GGCC	4 cut(s)	337, 416, 697, 792
ApeKI	GCWGC	1 cut(s)	836
Asp700I	GAANNNNTTC	2 cut(s)	86, 254
AspS9I	GGNCC	3 cut(s)	125, 697, 824
AsuHPI	GGTGA	3 cut(s)	340, 554, 869
AvaII	GGWCC	2 cut(s)	125, 824
BanI	GGYRCC	1 cut(s)	754
BbsI	GAAGAC	1 cut(s)	914
BbvI	GCAGC	1 cut(s)	823
BccI	CCATC	2 cut(s)	440, 778
BciT130I	CCWGG	1 cut(s)	893
BciVI	GTATCC	1 cut(s)	104
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	2 cut(s)	30, 221
BfaI	CTAG	4 cut(s)	167, 534, 560, 581
BfrI	CTTAAG	1 cut(s)	749
BfuAI	ACCTGC	1 cut(s)	845
BfuI	GTATCC	1 cut(s)	104
BisI	GCNGC	1 cut(s)	837
BlsI	GCNGC	1 cut(s)	838
Bme1390I	CCNGG	1 cut(s)	893
Bme18I	GGWCC	2 cut(s)	125, 824
BmgT120I	GGNCC	3 cut(s)	125, 697, 824
BmiI	GGNNCC	3 cut(s)	172, 756, 825
BmrFI	CCNGG	1 cut(s)	893
BmsI	GCATC	3 cut(s)	43, 546, 920
BpiI	GAAGAC	1 cut(s)	914
BplI	GAGNNNNNCTC	2 cut(s)	700, 732
BpuEI	CTTGAG	2 cut(s)	12, 201
BsaAI	YACGTR	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	892
Bsc4I	CCNNNNNNNGG	1 cut(s)	801
Bse1I	ACTGG	1 cut(s)	918
BseBI	CCWGG	1 cut(s)	893
BseDI	CCNNGG	1 cut(s)	892
BseGI	GGATG	1 cut(s)	432
BseLI	CCNNNNNNNGG	1 cut(s)	801
BseNI	ACTGG	1 cut(s)	918
BseRI	GAGGAG	1 cut(s)	689
BseXI	GCAGC	1 cut(s)	823
BseYI	CCCAGC	1 cut(s)	806
BshFI	GGCC	4 cut(s)	339, 418, 699, 794
BshNI	GGYRCC	1 cut(s)	754
BslFI	GGGAC	1 cut(s)	837
BslI	CCNNNNNNNGG	1 cut(s)	801
BsmAI	GTCTC	2 cut(s)	30, 221
BsmFI	GGGAC	1 cut(s)	837
BsnI	GGCC	4 cut(s)	339, 418, 699, 794
Bsp1407I	TGTACA	1 cut(s)	324
Bsp143I	GATC	3 cut(s)	220, 499, 768
BspACI	CCGC	1 cut(s)	356
BspANI	GGCC	4 cut(s)	339, 418, 699, 794
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	3 cut(s)	172, 756, 825
BspMI	ACCTGC	1 cut(s)	845
BspQI	GCTCTTC	2 cut(s)	92, 723
BspT107I	GGYRCC	1 cut(s)	754
BspTI	CTTAAG	1 cut(s)	749
BsrGI	TGTACA	1 cut(s)	324
BsrI	ACTGG	1 cut(s)	918
BssECI	CCNNGG	1 cut(s)	892
BssMI	GATC	3 cut(s)	220, 499, 768
Bst2UI	CCWGG	1 cut(s)	893
Bst4CI	ACNGT	2 cut(s)	414, 882
Bst6I	CTCTTC	5 cut(s)	92, 304, 656, 666, 723
BstAFI	CTTAAG	1 cut(s)	749
BstAPI	GCANNNNNTGC	1 cut(s)	530
BstAUI	TGTACA	1 cut(s)	324
BstBAI	YACGTR	1 cut(s)	79
BstC8I	GCNNGC	4 cut(s)	337, 420, 448, 632
BstDEI	CTNAG	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	432
BstKTI	GATC	3 cut(s)	223, 502, 771
BstMAI	GTCTC	2 cut(s)	30, 221
BstMBI	GATC	3 cut(s)	220, 499, 768
BstMWI	GCNNNNNNNGC	5 cut(s)	327, 336, 521, 530, 938
BstNI	CCWGG	1 cut(s)	893
BstSCI	CCNGG	1 cut(s)	891
BstV1I	GCAGC	1 cut(s)	823
BstV2I	GAAGAC	1 cut(s)	914
BsuI	GTATCC	1 cut(s)	104
BsuRI	GGCC	4 cut(s)	339, 418, 699, 794
BtsCI	GGATG	1 cut(s)	432
BtsI	GCAGTG	1 cut(s)	783
BtsIMutI	CAGTG	2 cut(s)	419, 783
BveI	ACCTGC	1 cut(s)	845
Cac8I	GCNNGC	4 cut(s)	337, 420, 448, 632
CciI	TCATGA	1 cut(s)	223
Cfr13I	GGNCC	3 cut(s)	125, 697, 824
Csp6I	GTAC	1 cut(s)	325
CspCI	CAANNNNNGTGG	2 cut(s)	25, 60
CviAII	CATG	5 cut(s)	224, 375, 437, 701, 926
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	3 cut(s)	222, 501, 770
DpnII	GATC	3 cut(s)	220, 499, 768
Eam1104I	CTCTTC	5 cut(s)	92, 304, 656, 666, 723
EarI	CTCTTC	5 cut(s)	92, 304, 656, 666, 723
Eco147I	AGGCCT	1 cut(s)	339
Eco32I	GATATC	1 cut(s)	384
Eco47I	GGWCC	2 cut(s)	125, 824
Eco57I	CTGAAG	1 cut(s)	285
EcoO109I	RGGNCCY	1 cut(s)	824
EcoRII	CCWGG	1 cut(s)	891
EcoRV	GATATC	1 cut(s)	384
EcoT22I	ATGCAT	1 cut(s)	913
FaeI	CATG	5 cut(s)	227, 378, 440, 704, 929
FaqI	GGGAC	1 cut(s)	837
FatI	CATG	5 cut(s)	223, 374, 436, 700, 925
FbaI	TGATCA	1 cut(s)	499
FblI	GTMKAC	1 cut(s)	884
Fnu4HI	GCNGC	1 cut(s)	837
FokI	GGATG	1 cut(s)	419
Fsp4HI	GCNGC	1 cut(s)	837
FspBI	CTAG	4 cut(s)	167, 534, 560, 581
GluI	GCNGC	1 cut(s)	837
GsaI	CCCAGC	1 cut(s)	810
HaeIII	GGCC	4 cut(s)	339, 418, 699, 794
Hin1II	CATG	5 cut(s)	227, 378, 440, 704, 929
HincII	GTYRAC	1 cut(s)	885
HindII	GTYRAC	1 cut(s)	885
HindIII	AAGCTT	2 cut(s)	319, 546
HinfI	GANTC	4 cut(s)	214, 266, 427, 650
HphI	GGTGA	3 cut(s)	340, 554, 869
Hpy166II	GTNNAC	1 cut(s)	885
Hpy188I	TCNGA	3 cut(s)	304, 655, 848
Hpy188III	TCNNGA	6 cut(s)	205, 218, 224, 278, 618, 947
Hpy8I	GTNNAC	1 cut(s)	885
HpyAV	CCTTC	3 cut(s)	169, 678, 837
HpyCH4III	ACNGT	2 cut(s)	414, 882
HpyCH4IV	ACGT	1 cut(s)	78
HpyCH4V	TGCA	6 cut(s)	244, 335, 440, 524, 763, 911
HpyF10VI	GCNNNNNNNGC	5 cut(s)	327, 336, 521, 530, 938
HpyF3I	CTNAG	1 cut(s)	317
HpySE526I	ACGT	1 cut(s)	78
Hsp92II	CATG	5 cut(s)	227, 378, 440, 704, 929
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	3 cut(s)	220, 499, 768
LguI	GCTCTTC	2 cut(s)	92, 723
LmnI	GCTCC	2 cut(s)	176, 676
Lsp1109I	GCAGC	1 cut(s)	823
LweI	GCATC	3 cut(s)	43, 546, 920
MaeI	CTAG	4 cut(s)	167, 534, 560, 581
MaeII	ACGT	1 cut(s)	78
MaeIII	GTNAC	2 cut(s)	211, 813
MalI	GATC	3 cut(s)	222, 501, 770
MboI	GATC	3 cut(s)	220, 499, 768
MboII	GAAGA	8 cut(s)	79, 291, 363, 673, 683, 710, 713, 914
MluCI	AATT	2 cut(s)	366, 743
MlyI	GAGTC	1 cut(s)	208
MmeI	TCCRAC	2 cut(s)	103, 617
MnlI	CCTC	8 cut(s)	101, 186, 189, 530, 657, 667, 688, 795
Mph1103I	ATGCAT	1 cut(s)	913
MroXI	GAANNNNTTC	2 cut(s)	86, 254
MseI	TTAA	2 cut(s)	750, 906
MslI	CAYNNNNRTG	1 cut(s)	776
MspA1I	CMGCKG	1 cut(s)	356
MspCI	CTTAAG	1 cut(s)	749
MspR9I	CCNGG	1 cut(s)	893
MvaI	CCWGG	1 cut(s)	893
MwoI	GCNNNNNNNGC	5 cut(s)	327, 336, 521, 530, 938
NdeII	GATC	3 cut(s)	220, 499, 768
NlaIII	CATG	5 cut(s)	227, 378, 440, 704, 929
NlaIV	GGNNCC	3 cut(s)	172, 756, 825
NmuCI	GTSAC	1 cut(s)	211
NsiI	ATGCAT	1 cut(s)	913
PagI	TCATGA	1 cut(s)	223
PaqCI	CACCTGC	1 cut(s)	845
PceI	AGGCCT	1 cut(s)	339
PciSI	GCTCTTC	2 cut(s)	92, 723
PdmI	GAANNNNTTC	2 cut(s)	86, 254
PfeI	GAWTC	3 cut(s)	266, 427, 650
PkrI	GCNGC	1 cut(s)	838
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
Ppu21I	YACGTR	1 cut(s)	79
PpuMI	RGGWCCY	1 cut(s)	824
Psp5II	RGGWCCY	1 cut(s)	824
Psp6I	CCWGG	1 cut(s)	891
PspFI	CCCAGC	1 cut(s)	806
PspGI	CCWGG	1 cut(s)	891
PspN4I	GGNNCC	3 cut(s)	172, 756, 825
PspPI	GGNCC	3 cut(s)	125, 697, 824
PspPPI	RGGWCCY	1 cut(s)	824
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
RseI	CAYNNNNRTG	1 cut(s)	776
SalI	GTCGAC	1 cut(s)	883
SapI	GCTCTTC	2 cut(s)	92, 723
SaqAI	TTAA	2 cut(s)	750, 906
SatI	GCNGC	1 cut(s)	837
Sau3AI	GATC	3 cut(s)	220, 499, 768
Sau96I	GGNCC	3 cut(s)	125, 697, 824
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	1 cut(s)	893
SfaNI	GCATC	3 cut(s)	43, 546, 920
SinI	GGWCC	2 cut(s)	125, 824
SmiMI	CAYNNNNRTG	1 cut(s)	776
SmlI	CTYRAG	3 cut(s)	27, 216, 749
SmoI	CTYRAG	3 cut(s)	27, 216, 749
Sse9I	AATT	2 cut(s)	366, 743
SseBI	AGGCCT	1 cut(s)	339
SsiI	CCGC	1 cut(s)	356
SspMI	CTAG	4 cut(s)	167, 534, 560, 581
StuI	AGGCCT	1 cut(s)	339
StyD4I	CCNGG	1 cut(s)	891
TaaI	ACNGT	2 cut(s)	414, 882
TaiI	ACGT	1 cut(s)	81
TaqI	TCGA	3 cut(s)	194, 380, 884
TasI	AATT	2 cut(s)	366, 743
TatI	WGTACW	1 cut(s)	324
TfiI	GAWTC	3 cut(s)	266, 427, 650
Tru1I	TTAA	2 cut(s)	750, 906
Tru9I	TTAA	2 cut(s)	750, 906
TscAI	CASTG	2 cut(s)	419, 783
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	1 cut(s)	836
Tsp45I	GTSAC	1 cut(s)	211
TspGWI	ACGGA	2 cut(s)	159, 262
TspRI	CASTG	2 cut(s)	419, 783
Vha464I	CTTAAG	1 cut(s)	749
VpaK11BI	GGWCC	2 cut(s)	125, 824
XmiI	GTMKAC	1 cut(s)	884
XmnI	GAANNNNTTC	2 cut(s)	86, 254
XspI	CTAG	4 cut(s)	167, 534, 560, 581
Zsp2I	ATGCAT	1 cut(s)	913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.