Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006930

Physical Location & Seq

Genomic Coordinates Forward (+)

19502311 .. 19503952

Gene Structure 1642 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG115600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGGCAAACAACAATCAGTACCTCCTGATAATCTTCATGTTATTAGATGTTTGCCTAATCTATGGCAACTCCTCAGCTGTTGGTGAAGATGGAACCGGAAGAAAATCACAGCAAATGGTAAATGTGGGCGTAATTCTTGACCTGGGTACTCCGGTTGGGAAGACGGCTCAACGCTGCATATCCATGGCGCTCTCGGAATTCTATGCTAGAAATGCCAACTATCGAACAAAGCTGAATCTTACTGTGAAAGATTCTAGGAATGATGTTGTTTCTGCAGCATCAGCAGCTTTAGAATTGCTAAACAATGAAGAGGTGCAAGCTATTATAGGTCCCCAAACATCAAGCCAAGCTAAGTTTGTCATAAGTCTCGGAGAGAAAGCACAAATCCCCATTATCTCATTTTCAGCCACAAGCCCTTCTTTGTCTCCAACTCTGAACCGTTTCTTCATCAGGACAGCTCTGGATGACTCTTCTCAAGTACAAGCCATCACATCCATTGTTAAAGCATATGGGTGGCATGAAGTTGTTCTTATATATGAAGACACAGAATATGGAAATGGTTTGATTCCTTATATAATTGATGCCTTTCAACAAATTGACACCAGGGTTCCTTACAGAAGTGTCATTTCCCCATCATCCAGTCGCTTAAACATTTTGAGAAAGCTTATCAAGTTAATGGCAATGCAGACGAGGGTATTCTTGGTGCACATGACTCCTTCACTTGGTTCTAAACTCTTTTTACTTGCAAAAGATGCAGGCATGATGAGTGAAGGGTATGCTTGGATCATAACTGATGGATTATCATCTGGGTTACATCCACTGGAGGGAAAGGTCATTGATTCAATGGAAGGTGTGGTGGGCGTAACGCCCTATGTACCAATGTCAACAGGTCTTAATGATTTTGAGATGAGATGGAAACAAAGCACTATTGGGACTACAAAGCAGACTCATTCTAAGATAAGCATATTTGGCTTATGGGCTTATGATACAGTTTGGGCATTAGCTAAGGCTGTAGAACTCGTTGAGTTGCAGGCAAATTATTCCAGTGCTTTAAAGAACAATAATAAAGGGAAAAGCACAGGTGGAATATTGAGCCAAATTGGTGTGTCTAAATCAGGTCCAAGGCTTCTCCAAACATTGCTGAGGACCAGATTTGAAGGCTTAAGTGGGAGATTTAGATTGATTGATCAACAATTTCAACCTGCAGCCTTTCAAATATTCAATGTCATGAGTAAGAGGGAGAGAGTGATTGGATATTGGACCCCCAACAAAGAATCATTTGATGATTTAGTTCAATCTGATATTCTGATTATCAACGTGAGTTTATCATTAAAGAACCTACATGGCCTGGAAACACCAGTACTCCACCAAAGGGTTGGGATATACCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

463

Amino Acids

51.13

Weight (kDa)

9.06

Isoelectric Point (pI)

36.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	40 - 340	2.4e-24	Periplasmic binding protein
ANF_receptor	PF01094	57 - 409	4.2e-81	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006930)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31990 FvH4_4g31991
prunus_persica	Prupe.1G094800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0404041 RchiOBHm_Chr4g0404051 RchiOBHm_Chr4g0404091
rosa_laevigata	RLG00000008926 RLG00000008930 RLG00000008933
rosa_multiflora	Rmu_co8105392.1_g000001 Rmu_co8272517.1_g000001 Rmu_sc0001999.1_g000001 Rmu_sc0003483.1_g000002 Rmu_sc0006579.1_g000005 Rmu_sc0009977.1_g000001 Rmu_sc0020288.1_g000002
rosa_roxburghii	Rroxscaffold_5G00348610
rosa_rugosa	Rorug04G0046800
rosa_samantha	Rh4AG121900 Rh4AG122500 Rh4BG115600 Rh4BG115700 Rh4CG130900 Rh4CG131000 Rh4DG115800
rosa_wichuraiana	Rw4G009970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1210
AclWI	GGATC	1 cut(s)	791
AcsI	RAATTY	1 cut(s)	197
AfaI	GTAC	5 cut(s)	20, 148, 480, 876, 1362
AfiI	CCNNNNNNNGG	3 cut(s)	722, 824, 1372
AflII	CTTAAG	1 cut(s)	1162
AgsI	TTSAA	7 cut(s)	590, 843, 1157, 1199, 1214, 1222, 1295
AjnI	CCWGG	3 cut(s)	141, 602, 1347
AluBI	AGCT	8 cut(s)	77, 232, 287, 320, 350, 458, 664, 1004
AluI	AGCT	8 cut(s)	77, 232, 287, 320, 350, 458, 664, 1004
Alw21I	GWGCWC	1 cut(s)	708
Alw26I	GTCTC	2 cut(s)	371, 429
Alw44I	GTGCAC	1 cut(s)	704
AlwI	GGATC	1 cut(s)	791
AoxI	GGCC	1 cut(s)	1345
ApaLI	GTGCAC	1 cut(s)	704
ApeKI	GCWGC	4 cut(s)	174, 275, 284, 1205
ApoI	RAATTY	1 cut(s)	197
Asp700I	GAANNNNTTC	2 cut(s)	440, 525
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	4 cut(s)	329, 1118, 1146, 1260
AsuHPI	GGTGA	1 cut(s)	95
AvaII	GGWCC	4 cut(s)	329, 1118, 1146, 1260
BaeGI	GKGCMC	1 cut(s)	708
BaeI	ACNNNNGTAYC	2 cut(s)	138, 171
BbsI	GAAGAC	2 cut(s)	167, 546
Bbv12I	GWGCWC	1 cut(s)	708
BbvCI	CCTCAGC	2 cut(s)	73, 1142
BbvI	GCAGC	4 cut(s)	161, 287, 296, 1217
BccI	CCATC	5 cut(s)	83, 494, 640, 788, 906
BceAI	ACGGC	1 cut(s)	180
BciT130I	CCWGG	3 cut(s)	143, 604, 1349
BclI	TGATCA	1 cut(s)	1186
BcoDI	GTCTC	2 cut(s)	371, 429
BfaI	CTAG	2 cut(s)	207, 255
BfmI	CTRYAG	4 cut(s)	273, 1011, 1203, 1388
BfoI	RGCGCY	1 cut(s)	191
BfrI	CTTAAG	1 cut(s)	1162
BfuAI	ACCTGC	1 cut(s)	1210
BisI	GCNGC	4 cut(s)	175, 276, 285, 1206
BlsI	GCNGC	4 cut(s)	176, 277, 286, 1207
BmcAI	AGTACT	1 cut(s)	1362
Bme1390I	CCNGG	3 cut(s)	143, 604, 1349
Bme18I	GGWCC	4 cut(s)	329, 1118, 1146, 1260
BmgT120I	GGNCC	4 cut(s)	329, 1118, 1146, 1260
BmiI	GGNNCC	4 cut(s)	94, 331, 609, 1262
BmrFI	CCNGG	3 cut(s)	143, 604, 1349
BmsI	GCATC	3 cut(s)	287, 571, 742
BpiI	GAAGAC	2 cut(s)	167, 546
BpmI	CTGGAG	1 cut(s)	842
Bpu10I	CCTNAGC	3 cut(s)	73, 1005, 1142
BpuEI	CTTGAG	1 cut(s)	459
BsaBI	GATNNNNATC	1 cut(s)	802
BsaJI	CCNNGG	4 cut(s)	142, 183, 603, 1121
BsaWI	WCCGGW	2 cut(s)	95, 151
BsaXI	ACNNNNNCTCC	2 cut(s)	1347, 1377
Bsc4I	CCNNNNNNNGG	3 cut(s)	722, 824, 1372
Bse1I	ACTGG	4 cut(s)	639, 825, 1044, 1358
Bse3DI	GCAATG	2 cut(s)	687, 1136
Bse8I	GATNNNNATC	1 cut(s)	802
BseBI	CCWGG	3 cut(s)	143, 604, 1349
BseDI	CCNNGG	4 cut(s)	142, 183, 603, 1121
BseGI	GGATG	4 cut(s)	469, 491, 635, 814
BseJI	GATNNNNATC	1 cut(s)	802
BseLI	CCNNNNNNNGG	3 cut(s)	722, 824, 1372
BseMI	GCAATG	2 cut(s)	687, 1136
BseMII	CTCAG	2 cut(s)	87, 1133
BseNI	ACTGG	4 cut(s)	639, 825, 1044, 1358
BseRI	GAGGAG	1 cut(s)	61
BseSI	GKGCMC	1 cut(s)	708
BseXI	GCAGC	4 cut(s)	161, 287, 296, 1217
BshFI	GGCC	1 cut(s)	1347
BsiHKAI	GWGCWC	1 cut(s)	708
BsiSI	CCGG	2 cut(s)	96, 152
BslFI	GGGAC	2 cut(s)	315, 946
BslI	CCNNNNNNNGG	3 cut(s)	722, 824, 1372
BsmAI	GTCTC	2 cut(s)	371, 429
BsmFI	GGGAC	2 cut(s)	315, 946
BsnI	GGCC	1 cut(s)	1347
Bsp1286I	GDGCHC	1 cut(s)	708
Bsp143I	GATC	2 cut(s)	783, 1186
Bsp19I	CCATGG	1 cut(s)	183
BspANI	GGCC	1 cut(s)	1347
BspCNI	CTCAG	2 cut(s)	86, 1134
BspHI	TCATGA	1 cut(s)	1227
BspLI	GGNNCC	4 cut(s)	94, 331, 609, 1262
BspMAI	CTGCAG	2 cut(s)	277, 1207
BspMI	ACCTGC	1 cut(s)	1210
BspPI	GGATC	1 cut(s)	791
BspTI	CTTAAG	1 cut(s)	1162
BsrDI	GCAATG	2 cut(s)	687, 1136
BsrI	ACTGG	4 cut(s)	639, 825, 1044, 1358
BssECI	CCNNGG	4 cut(s)	142, 183, 603, 1121
BssMI	GATC	2 cut(s)	783, 1186
BssT1I	CCWWGG	2 cut(s)	183, 1121
Bst2UI	CCWGG	3 cut(s)	143, 604, 1349
Bst4CI	ACNGT	3 cut(s)	244, 440, 991
Bst6I	CTCTTC	2 cut(s)	303, 475
BstAFI	CTTAAG	1 cut(s)	1162
BstAPI	GCANNNNNTGC	1 cut(s)	752
BstC8I	GCNNGC	3 cut(s)	318, 757, 1032
BstDEI	CTNAG	5 cut(s)	73, 351, 954, 1005, 1142
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	4 cut(s)	469, 491, 635, 814
BstH2I	RGCGCY	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	2 cut(s)	786, 1189
BstMAI	GTCTC	2 cut(s)	371, 429
BstMBI	GATC	2 cut(s)	783, 1186
BstMWI	GCNNNNNNNGC	5 cut(s)	212, 281, 284, 752, 969
BstNI	CCWGG	3 cut(s)	143, 604, 1349
BstSCI	CCNGG	3 cut(s)	141, 602, 1347
BstSFI	CTRYAG	4 cut(s)	273, 1011, 1203, 1388
BstSLI	GKGCMC	1 cut(s)	708
BstV1I	GCAGC	4 cut(s)	161, 287, 296, 1217
BstV2I	GAAGAC	2 cut(s)	167, 546
BstXI	CCANNNNNNTGG	1 cut(s)	1376
BsuRI	GGCC	1 cut(s)	1347
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	4 cut(s)	469, 491, 635, 814
BtsIMutI	CAGTG	2 cut(s)	818, 1051
BveI	ACCTGC	1 cut(s)	1210
Cac8I	GCNNGC	3 cut(s)	318, 757, 1032
CciI	TCATGA	1 cut(s)	1227
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	4 cut(s)	329, 1118, 1146, 1260
Csp6I	GTAC	5 cut(s)	19, 147, 479, 875, 1361
CviAII	CATG	7 cut(s)	37, 184, 518, 709, 760, 1228, 1343
CviQI	GTAC	5 cut(s)	19, 147, 479, 875, 1361
DdeI	CTNAG	5 cut(s)	73, 351, 954, 1005, 1142
DpnI	GATC	2 cut(s)	785, 1188
DpnII	GATC	2 cut(s)	783, 1186
DraI	TTTAAA	1 cut(s)	1053
Eam1104I	CTCTTC	2 cut(s)	303, 475
EarI	CTCTTC	2 cut(s)	303, 475
Eco130I	CCWWGG	2 cut(s)	183, 1121
Eco47I	GGWCC	4 cut(s)	329, 1118, 1146, 1260
EcoO109I	RGGNCCY	1 cut(s)	329
EcoRI	GAATTC	1 cut(s)	197
EcoRII	CCWGG	3 cut(s)	141, 602, 1347
EcoT14I	CCWWGG	2 cut(s)	183, 1121
ErhI	CCWWGG	2 cut(s)	183, 1121
FaeI	CATG	7 cut(s)	40, 187, 521, 712, 763, 1231, 1346
FalI	AAGNNNNNCTT	4 cut(s)	403, 435, 513, 545
FaqI	GGGAC	2 cut(s)	315, 946
FatI	CATG	7 cut(s)	36, 183, 517, 708, 759, 1227, 1342
FauNDI	CATATG	1 cut(s)	508
FbaI	TGATCA	1 cut(s)	1186
Fnu4HI	GCNGC	4 cut(s)	175, 276, 285, 1206
FokI	GGATG	4 cut(s)	476, 478, 622, 801
Fsp4HI	GCNGC	4 cut(s)	175, 276, 285, 1206
FspBI	CTAG	2 cut(s)	207, 255
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	4 cut(s)	175, 276, 285, 1206
GsuI	CTGGAG	1 cut(s)	842
HaeII	RGCGCY	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	1347
HapII	CCGG	2 cut(s)	96, 152
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	7 cut(s)	40, 187, 521, 712, 763, 1231, 1346
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HincII	GTYRAC	1 cut(s)	885
HindII	GTYRAC	1 cut(s)	885
HindIII	AAGCTT	1 cut(s)	662
HinfI	GANTC	8 cut(s)	235, 251, 467, 565, 712, 839, 946, 1274
HpaII	CCGG	2 cut(s)	96, 152
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	2 cut(s)	706, 885
Hpy188I	TCNGA	5 cut(s)	196, 371, 435, 1300, 1308
Hpy188III	TCNNGA	5 cut(s)	25, 137, 451, 461, 1228
Hpy8I	GTNNAC	2 cut(s)	706, 885
HpyAV	CCTTC	5 cut(s)	426, 726, 764, 842, 1151
HpyCH4III	ACNGT	3 cut(s)	244, 440, 991
HpyCH4IV	ACGT	1 cut(s)	1317
HpyCH4V	TGCA	9 cut(s)	177, 275, 316, 685, 706, 746, 755, 1030, 1205
HpyF10VI	GCNNNNNNNGC	5 cut(s)	212, 281, 284, 752, 969
HpyF3I	CTNAG	5 cut(s)	73, 351, 954, 1005, 1142
HpySE526I	ACGT	1 cut(s)	1317
Hsp92II	CATG	7 cut(s)	40, 187, 521, 712, 763, 1231, 1346
HspAI	GCGC	1 cut(s)	188
Ksp22I	TGATCA	1 cut(s)	1186
Kzo9I	GATC	2 cut(s)	783, 1186
Lsp1109I	GCAGC	4 cut(s)	161, 287, 296, 1217
LweI	GCATC	3 cut(s)	287, 571, 742
MaeI	CTAG	2 cut(s)	207, 255
MaeII	ACGT	1 cut(s)	1317
MaeIII	GTNAC	2 cut(s)	810, 862
MalI	GATC	2 cut(s)	785, 1188
MboI	GATC	2 cut(s)	783, 1186
MboII	GAAGA	8 cut(s)	25, 98, 111, 172, 320, 436, 462, 551
MhlI	GDGCHC	1 cut(s)	708
MluCI	AATT	8 cut(s)	132, 197, 293, 576, 594, 1036, 1098, 1193
MlyI	GAGTC	3 cut(s)	461, 706, 940
MmeI	TCCRAC	1 cut(s)	452
MnlI	CCTC	7 cut(s)	32, 82, 304, 684, 817, 1137, 1230
MroXI	GAANNNNTTC	2 cut(s)	440, 525
MseI	TTAA	7 cut(s)	501, 647, 674, 894, 1052, 1163, 1331
MslI	CAYNNNNRTG	2 cut(s)	182, 511
MspA1I	CMGCKG	1 cut(s)	77
MspCI	CTTAAG	1 cut(s)	1162
MspI	CCGG	2 cut(s)	96, 152
MspR9I	CCNGG	3 cut(s)	143, 604, 1349
MvaI	CCWGG	3 cut(s)	143, 604, 1349
MwoI	GCNNNNNNNGC	5 cut(s)	212, 281, 284, 752, 969
NcoI	CCATGG	1 cut(s)	183
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	2 cut(s)	783, 1186
NlaIII	CATG	7 cut(s)	40, 187, 521, 712, 763, 1231, 1346
NlaIV	GGNNCC	4 cut(s)	94, 331, 609, 1262
PagI	TCATGA	1 cut(s)	1227
PdmI	GAANNNNTTC	2 cut(s)	440, 525
PfeI	GAWTC	5 cut(s)	235, 251, 565, 839, 1274
PkrI	GCNGC	4 cut(s)	176, 277, 286, 1207
PleI	GAGTC	3 cut(s)	461, 706, 940
PpsI	GAGTC	3 cut(s)	461, 706, 940
PpuMI	RGGWCCY	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	329
Psp6I	CCWGG	3 cut(s)	141, 602, 1347
PspGI	CCWGG	3 cut(s)	141, 602, 1347
PspN4I	GGNNCC	4 cut(s)	94, 331, 609, 1262
PspPI	GGNCC	4 cut(s)	329, 1118, 1146, 1260
PspPPI	RGGWCCY	1 cut(s)	329
PstI	CTGCAG	2 cut(s)	277, 1207
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	5 cut(s)	20, 148, 480, 876, 1362
RsaNI	GTAC	5 cut(s)	19, 147, 479, 875, 1361
RseI	CAYNNNNRTG	2 cut(s)	182, 511
SaqAI	TTAA	7 cut(s)	501, 647, 674, 894, 1052, 1163, 1331
SatI	GCNGC	4 cut(s)	175, 276, 285, 1206
Sau3AI	GATC	2 cut(s)	783, 1186
Sau96I	GGNCC	4 cut(s)	329, 1118, 1146, 1260
ScaI	AGTACT	1 cut(s)	1362
SchI	GAGTC	3 cut(s)	461, 706, 940
ScrFI	CCNGG	3 cut(s)	143, 604, 1349
SduI	GDGCHC	1 cut(s)	708
SfaNI	GCATC	3 cut(s)	287, 571, 742
SfcI	CTRYAG	4 cut(s)	273, 1011, 1203, 1388
SinI	GGWCC	4 cut(s)	329, 1118, 1146, 1260
SmiMI	CAYNNNNRTG	2 cut(s)	182, 511
SmlI	CTYRAG	2 cut(s)	474, 1162
SmoI	CTYRAG	2 cut(s)	474, 1162
Sse9I	AATT	8 cut(s)	132, 197, 293, 576, 594, 1036, 1098, 1193
SspI	AATATT	2 cut(s)	1089, 1218
SspMI	CTAG	2 cut(s)	207, 255
StyD4I	CCNGG	3 cut(s)	141, 602, 1347
StyI	CCWWGG	2 cut(s)	183, 1121
TaaI	ACNGT	3 cut(s)	244, 440, 991
TaiI	ACGT	1 cut(s)	1320
TaqI	TCGA	1 cut(s)	223
TasI	AATT	8 cut(s)	132, 197, 293, 576, 594, 1036, 1098, 1193
TatI	WGTACW	2 cut(s)	478, 1360
TfiI	GAWTC	5 cut(s)	235, 251, 565, 839, 1274
Tru1I	TTAA	7 cut(s)	501, 647, 674, 894, 1052, 1163, 1331
Tru9I	TTAA	7 cut(s)	501, 647, 674, 894, 1052, 1163, 1331
TscAI	CASTG	2 cut(s)	825, 1051
TseI	GCWGC	4 cut(s)	174, 275, 284, 1205
TspDTI	ATGAA	5 cut(s)	25, 321, 436, 534, 552
TspRI	CASTG	2 cut(s)	825, 1051
Vha464I	CTTAAG	1 cut(s)	1162
VneI	GTGCAC	1 cut(s)	704
VpaK11BI	GGWCC	4 cut(s)	329, 1118, 1146, 1260
XapI	RAATTY	1 cut(s)	197
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1373
XmnI	GAANNNNTTC	2 cut(s)	440, 525
XspI	CTAG	2 cut(s)	207, 255
ZrmI	AGTACT	1 cut(s)	1362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.