Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003483.1

Orthogroup ID

OG0006930

Physical Location & Seq

Genomic Coordinates Reverse (-)

11012 .. 12259

Gene Structure 1248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003483.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

atgaaccgtttcttcatcaggacagctctggatgactcttctcaagtaaaagccatcacatccattgttaaagcatatgggtggcatgaagttgttcttatatatgaagacacagaatatggaaatggtttgattccctatataattgatgcctttcaacaaattgacaccagggttccttacagaagtgtcatttccccatcatccagtcgcttaaacattttgagaaagcttaacaagttaatggcaatggagacgagggtattcttggtgcacatgactccttcacttggttctaaactctttgtacttgcaaaagatgcaggcatgatgagtgaagggtatgcttggatcataactgatggattatcatctgggttacatccactggacggaaaggtcattgattcaatggaaggtgtggtgggcgtaacgccctatgtaccaatgtcaacaggtcttgatgactttgagatgagatggaaacaaagcactattgggactacaaagaagactcattctaagataagcatatttggcttatgggcttatgacacagtttgggcattagctaaggctgtagaactcgttgagttgcaggcaaattattccagtgctttaaagaacaataataaagggaaaagctcaggtggaatattgagccaaattggtgtgtctaaatcaggtccaaggcttctccaaacattgctgaggaccagatttgaaggcttaagtgggagatttagattgattgatcaacaatttcaacctgcagcctttaaaattttcaatgtgataagtaagagggagagagtgattggatattggacccccaacaaagaatcatttgatgatttagttcaatctggtatgttaacaaattactcgagtacttctattgccatagatgatcattgtgagtttatcattaaagtacctatatggcctggaaacaccagtactccaccaaagggttgggatatacctatatctggtaaaaagttgaggattggtgtacctgctgttacacctgacagttttagtgaatttatgaagatagaatggtttcctcacaccaataagccgaaaagcttctcagggttctcgtatgatgtcttccttgcagccttagaaagagtgccatttgcacttccacacaagttcattccattcaccaatggttcatcaagagaggctgcagggacttatgacgatcttctttaccagattaagttcaatgtgagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

415

Amino Acids

46.43

Weight (kDa)

9.17

Isoelectric Point (pI)

35.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006930)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31990 FvH4_4g31991
prunus_persica	Prupe.1G094800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0404041 RchiOBHm_Chr4g0404051 RchiOBHm_Chr4g0404091
rosa_laevigata	RLG00000008926 RLG00000008930 RLG00000008933
rosa_multiflora	Rmu_co8105392.1_g000001 Rmu_co8272517.1_g000001 Rmu_sc0001999.1_g000001 Rmu_sc0003483.1_g000002 Rmu_sc0006579.1_g000005 Rmu_sc0009977.1_g000001 Rmu_sc0020288.1_g000002
rosa_roxburghii	Rroxscaffold_5G00348610
rosa_rugosa	Rorug04G0046800
rosa_samantha	Rh4AG121900 Rh4AG122500 Rh4BG115600 Rh4BG115700 Rh4CG130900 Rh4CG131000 Rh4DG115800
rosa_wichuraiana	Rw4G009970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	398
Acc36I	ACCTGC	2 cut(s)	778, 1027
AclWI	GGATC	1 cut(s)	359
AcsI	RAATTY	2 cut(s)	783, 1046
AfaI	GTAC	6 cut(s)	309, 444, 892, 936, 961, 1017
AfiI	CCNNNNNNNGG	4 cut(s)	290, 392, 971, 992
AflII	CTTAAG	1 cut(s)	730
AgsI	TTSAA	7 cut(s)	158, 411, 725, 767, 790, 863, 1237
AjnI	CCWGG	2 cut(s)	170, 946
AluBI	AGCT	5 cut(s)	26, 232, 572, 645, 1092
AluI	AGCT	5 cut(s)	26, 232, 572, 645, 1092
Alw21I	GWGCWC	1 cut(s)	276
Alw26I	GTCTC	1 cut(s)	248
Alw44I	GTGCAC	1 cut(s)	272
AlwI	GGATC	1 cut(s)	359
Ama87I	CYCGRG	1 cut(s)	886
AoxI	GGCC	1 cut(s)	944
ApaLI	GTGCAC	1 cut(s)	272
ApeKI	GCWGC	3 cut(s)	773, 1124, 1196
ApoI	RAATTY	2 cut(s)	783, 1046
Asp700I	GAANNNNTTC	4 cut(s)	8, 93, 1065, 1091
AspS9I	GGNCC	3 cut(s)	686, 714, 828
AsuHPI	GGTGA	1 cut(s)	1165
AvaI	CYCGRG	1 cut(s)	886
AvaII	GGWCC	3 cut(s)	686, 714, 828
BaeGI	GKGCMC	1 cut(s)	276
BarI	GAAGNNNNNNTAC	2 cut(s)	1100, 1132
BbsI	GAAGAC	3 cut(s)	114, 518, 1108
Bbv12I	GWGCWC	1 cut(s)	276
BbvCI	CCTCAGC	1 cut(s)	710
BbvI	GCAGC	3 cut(s)	785, 1136, 1183
BccI	CCATC	4 cut(s)	62, 208, 356, 474
BciT130I	CCWGG	2 cut(s)	172, 948
BclI	TGATCA	2 cut(s)	754, 910
BcoDI	GTCTC	1 cut(s)	248
BfmI	CTRYAG	3 cut(s)	579, 771, 1197
BfrI	CTTAAG	1 cut(s)	730
BfuAI	ACCTGC	2 cut(s)	778, 1027
BisI	GCNGC	3 cut(s)	774, 1125, 1197
BlsI	GCNGC	3 cut(s)	775, 1126, 1198
BmcAI	AGTACT	2 cut(s)	892, 961
Bme1390I	CCNGG	2 cut(s)	172, 948
Bme18I	GGWCC	3 cut(s)	686, 714, 828
BmeT110I	CYCGRG	1 cut(s)	886
BmgT120I	GGNCC	3 cut(s)	686, 714, 828
BmiI	GGNNCC	2 cut(s)	177, 830
BmrFI	CCNGG	2 cut(s)	172, 948
BmsI	GCATC	2 cut(s)	139, 310
BpiI	GAAGAC	3 cut(s)	114, 518, 1108
Bpu10I	CCTNAGC	3 cut(s)	573, 646, 710
BpuEI	CTTGAG	1 cut(s)	27
BsaBI	GATNNNNATC	1 cut(s)	370
BsaJI	CCNNGG	2 cut(s)	171, 689
BsaXI	ACNNNNNCTCC	2 cut(s)	946, 976
Bsc4I	CCNNNNNNNGG	4 cut(s)	290, 392, 971, 992
Bse1I	ACTGG	4 cut(s)	207, 393, 612, 957
Bse3DI	GCAATG	2 cut(s)	255, 704
Bse8I	GATNNNNATC	1 cut(s)	370
BseBI	CCWGG	2 cut(s)	172, 948
BseDI	CCNNGG	2 cut(s)	171, 689
BseGI	GGATG	4 cut(s)	37, 59, 203, 382
BseJI	GATNNNNATC	1 cut(s)	370
BseLI	CCNNNNNNNGG	4 cut(s)	290, 392, 971, 992
BseMI	GCAATG	2 cut(s)	255, 704
BseMII	CTCAG	3 cut(s)	660, 701, 1110
BseNI	ACTGG	4 cut(s)	207, 393, 612, 957
BseSI	GKGCMC	1 cut(s)	276
BseXI	GCAGC	3 cut(s)	785, 1136, 1183
BshFI	GGCC	1 cut(s)	946
BsiHKAI	GWGCWC	1 cut(s)	276
BsiHKCI	CYCGRG	1 cut(s)	886
BslFI	GGGAC	2 cut(s)	514, 1216
BslI	CCNNNNNNNGG	4 cut(s)	290, 392, 971, 992
BsmAI	GTCTC	1 cut(s)	248
BsmBI	CGTCTC	1 cut(s)	248
BsmFI	GGGAC	2 cut(s)	514, 1216
BsnI	GGCC	1 cut(s)	946
BsoBI	CYCGRG	1 cut(s)	886
Bsp1286I	GDGCHC	1 cut(s)	276
Bsp143I	GATC	4 cut(s)	351, 754, 910, 1213
BspANI	GGCC	1 cut(s)	946
BspCNI	CTCAG	3 cut(s)	659, 702, 1109
BspLI	GGNNCC	2 cut(s)	177, 830
BspMAI	CTGCAG	2 cut(s)	775, 1201
BspMI	ACCTGC	2 cut(s)	778, 1027
BspPI	GGATC	1 cut(s)	359
BspTI	CTTAAG	1 cut(s)	730
BsrDI	GCAATG	2 cut(s)	255, 704
BsrI	ACTGG	4 cut(s)	207, 393, 612, 957
BssECI	CCNNGG	2 cut(s)	171, 689
BssMI	GATC	4 cut(s)	351, 754, 910, 1213
BssT1I	CCWWGG	1 cut(s)	689
Bst2UI	CCWGG	2 cut(s)	172, 948
Bst4CI	ACNGT	3 cut(s)	8, 559, 1037
Bst6I	CTCTTC	1 cut(s)	43
BstAFI	CTTAAG	1 cut(s)	730
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstC8I	GCNNGC	2 cut(s)	325, 600
BstDEI	CTNAG	6 cut(s)	522, 573, 646, 710, 1096, 1129
BstF5I	GGATG	4 cut(s)	37, 59, 203, 382
BstKTI	GATC	4 cut(s)	354, 757, 913, 1216
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	4 cut(s)	351, 754, 910, 1213
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 537
BstNI	CCWGG	2 cut(s)	172, 948
BstSCI	CCNGG	2 cut(s)	170, 946
BstSFI	CTRYAG	3 cut(s)	579, 771, 1197
BstSLI	GKGCMC	1 cut(s)	276
BstV1I	GCAGC	3 cut(s)	785, 1136, 1183
BstV2I	GAAGAC	3 cut(s)	114, 518, 1108
BstXI	CCANNNNNNTGG	1 cut(s)	975
BsuRI	GGCC	1 cut(s)	946
BtsCI	GGATG	4 cut(s)	37, 59, 203, 382
BtsIMutI	CAGTG	2 cut(s)	386, 619
BveI	ACCTGC	2 cut(s)	778, 1027
Cac8I	GCNNGC	2 cut(s)	325, 600
Cfr13I	GGNCC	3 cut(s)	686, 714, 828
Csp6I	GTAC	6 cut(s)	308, 443, 891, 935, 960, 1016
CviAII	CATG	3 cut(s)	86, 277, 328
CviQI	GTAC	6 cut(s)	308, 443, 891, 935, 960, 1016
DdeI	CTNAG	6 cut(s)	522, 573, 646, 710, 1096, 1129
DpnI	GATC	4 cut(s)	353, 756, 912, 1215
DpnII	GATC	4 cut(s)	351, 754, 910, 1213
DraI	TTTAAA	2 cut(s)	621, 781
DrdI	GACNNNNNNGTC	1 cut(s)	398
DseDI	GACNNNNNNGTC	1 cut(s)	398
Eam1104I	CTCTTC	1 cut(s)	43
EarI	CTCTTC	1 cut(s)	43
Eco130I	CCWWGG	1 cut(s)	689
Eco47I	GGWCC	3 cut(s)	686, 714, 828
Eco88I	CYCGRG	1 cut(s)	886
EcoRII	CCWGG	2 cut(s)	170, 946
EcoT14I	CCWWGG	1 cut(s)	689
ErhI	CCWWGG	1 cut(s)	689
Esp3I	CGTCTC	1 cut(s)	248
FaeI	CATG	3 cut(s)	89, 280, 331
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FaqI	GGGAC	2 cut(s)	514, 1216
FatI	CATG	3 cut(s)	85, 276, 327
FauNDI	CATATG	1 cut(s)	76
FbaI	TGATCA	2 cut(s)	754, 910
Fnu4HI	GCNGC	3 cut(s)	774, 1125, 1197
FokI	GGATG	4 cut(s)	44, 46, 190, 369
Fsp4HI	GCNGC	3 cut(s)	774, 1125, 1197
GluI	GCNGC	3 cut(s)	774, 1125, 1197
HaeIII	GGCC	1 cut(s)	946
Hin1II	CATG	3 cut(s)	89, 280, 331
HincII	GTYRAC	2 cut(s)	453, 876
HindII	GTYRAC	2 cut(s)	453, 876
HindIII	AAGCTT	2 cut(s)	230, 1090
HinfI	GANTC	6 cut(s)	35, 133, 280, 407, 514, 842
HpaI	GTTAAC	1 cut(s)	876
HphI	GGTGA	1 cut(s)	1165
Hpy166II	GTNNAC	4 cut(s)	274, 453, 876, 1016
Hpy188III	TCNNGA	4 cut(s)	19, 29, 461, 1188
Hpy8I	GTNNAC	4 cut(s)	274, 453, 876, 1016
HpyAV	CCTTC	4 cut(s)	294, 332, 410, 719
HpyCH4III	ACNGT	3 cut(s)	8, 559, 1037
HpyCH4V	TGCA	8 cut(s)	274, 314, 323, 598, 773, 1124, 1148, 1199
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 537
HpyF3I	CTNAG	6 cut(s)	522, 573, 646, 710, 1096, 1129
Hsp92II	CATG	3 cut(s)	89, 280, 331
Ksp22I	TGATCA	2 cut(s)	754, 910
KspAI	GTTAAC	1 cut(s)	876
Kzo9I	GATC	4 cut(s)	351, 754, 910, 1213
Lsp1109I	GCAGC	3 cut(s)	785, 1136, 1183
LweI	GCATC	2 cut(s)	139, 310
MaeIII	GTNAC	3 cut(s)	378, 430, 1024
MalI	GATC	4 cut(s)	353, 756, 912, 1215
MboI	GATC	4 cut(s)	351, 754, 910, 1213
MboII	GAAGA	7 cut(s)	4, 30, 119, 523, 1066, 1108, 1208
MhlI	GDGCHC	1 cut(s)	276
MluCI	AATT	8 cut(s)	144, 162, 604, 666, 761, 783, 880, 1046
MlyI	GAGTC	3 cut(s)	29, 274, 508
MnlI	CCTC	6 cut(s)	252, 705, 798, 999, 1080, 1186
MroXI	GAANNNNTTC	4 cut(s)	8, 93, 1065, 1091
MslI	CAYNNNNRTG	1 cut(s)	79
MspCI	CTTAAG	1 cut(s)	730
MspR9I	CCNGG	2 cut(s)	172, 948
MvaI	CCWGG	2 cut(s)	172, 948
MwoI	GCNNNNNNNGC	2 cut(s)	320, 537
NdeI	CATATG	1 cut(s)	76
NdeII	GATC	4 cut(s)	351, 754, 910, 1213
NlaIII	CATG	3 cut(s)	89, 280, 331
NlaIV	GGNNCC	2 cut(s)	177, 830
PaeR7I	CTCGAG	1 cut(s)	886
PdmI	GAANNNNTTC	4 cut(s)	8, 93, 1065, 1091
PfeI	GAWTC	3 cut(s)	133, 407, 842
PkrI	GCNGC	3 cut(s)	775, 1126, 1198
PleI	GAGTC	3 cut(s)	29, 274, 508
PpsI	GAGTC	3 cut(s)	29, 274, 508
Psp6I	CCWGG	2 cut(s)	170, 946
PspGI	CCWGG	2 cut(s)	170, 946
PspN4I	GGNNCC	2 cut(s)	177, 830
PspPI	GGNCC	3 cut(s)	686, 714, 828
PspXI	VCTCGAGB	1 cut(s)	886
PstI	CTGCAG	2 cut(s)	775, 1201
RsaI	GTAC	6 cut(s)	309, 444, 892, 936, 961, 1017
RsaNI	GTAC	6 cut(s)	308, 443, 891, 935, 960, 1016
RseI	CAYNNNNRTG	1 cut(s)	79
SatI	GCNGC	3 cut(s)	774, 1125, 1197
Sau3AI	GATC	4 cut(s)	351, 754, 910, 1213
Sau96I	GGNCC	3 cut(s)	686, 714, 828
ScaI	AGTACT	2 cut(s)	892, 961
SchI	GAGTC	3 cut(s)	29, 274, 508
ScrFI	CCNGG	2 cut(s)	172, 948
SduI	GDGCHC	1 cut(s)	276
SfaNI	GCATC	2 cut(s)	139, 310
SfcI	CTRYAG	3 cut(s)	579, 771, 1197
Sfr274I	CTCGAG	1 cut(s)	886
SinI	GGWCC	3 cut(s)	686, 714, 828
SlaI	CTCGAG	1 cut(s)	886
SmiMI	CAYNNNNRTG	1 cut(s)	79
SmlI	CTYRAG	3 cut(s)	42, 730, 886
SmoI	CTYRAG	3 cut(s)	42, 730, 886
Sse9I	AATT	8 cut(s)	144, 162, 604, 666, 761, 783, 880, 1046
SspI	AATATT	1 cut(s)	657
StyD4I	CCNGG	2 cut(s)	170, 946
StyI	CCWWGG	1 cut(s)	689
TaaI	ACNGT	3 cut(s)	8, 559, 1037
TaqI	TCGA	1 cut(s)	887
TasI	AATT	8 cut(s)	144, 162, 604, 666, 761, 783, 880, 1046
TatI	WGTACW	3 cut(s)	307, 890, 959
TfiI	GAWTC	3 cut(s)	133, 407, 842
TscAI	CASTG	2 cut(s)	393, 619
TseI	GCWGC	3 cut(s)	773, 1124, 1196
TspDTI	ATGAA	7 cut(s)	4, 17, 102, 120, 1067, 1153, 1173
TspGWI	ACGGA	1 cut(s)	408
TspRI	CASTG	2 cut(s)	393, 619
Vha464I	CTTAAG	1 cut(s)	730
VneI	GTGCAC	1 cut(s)	272
VpaK11BI	GGWCC	3 cut(s)	686, 714, 828
XapI	RAATTY	2 cut(s)	783, 1046
XcmI	CCANNNNNNNNNTGG	1 cut(s)	972
XhoI	CTCGAG	1 cut(s)	886
XmnI	GAANNNNTTC	4 cut(s)	8, 93, 1065, 1091
ZrmI	AGTACT	2 cut(s)	892, 961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.