Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006930

Physical Location & Seq

Genomic Coordinates Forward (+)

26346399 .. 26353096

Gene Structure 6698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG121900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCAAACAACAATGAGTACCTCCTGATAATCTTCATGTTATTAGATGTTTGCCAAATATATGGCAACTTCTCAGCTGTTGGTGAAGATGGAACCGGAAGAAAATCAGAGCAAATGGTAAATGTGGGCATAATGCTTGACCTGGGTACTCCGGTTGGGAAGACGGCTCAACGCTGCATATCCATGGCGCTCTCGGAATTCTATGCTAGAAATGCCGACTATCGAACAAAGCTGAATCTTACTCTGAAAGATTCTAGGAATGATGTTGTTTCGATCTGCAGCATCAGCAGAGCCAAGAATGATGCAGAGACCCCGTCGACTCTGGGAGGGCACCGCCATGGCGCTATCGTCCTTGATTTTCGTCCCGGTTTCGAAATCGGACCTTTCTCTCTTGGTGCAGCTAGTTTGAATTGGGTTATTGGTGTCAGAATTATTGTTGGAAGGTTCAATCTTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

152

Amino Acids

16.6

Weight (kDa)

7.67

Isoelectric Point (pI)

18.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006930)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31990 FvH4_4g31991
prunus_persica	Prupe.1G094800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0404041 RchiOBHm_Chr4g0404051 RchiOBHm_Chr4g0404091
rosa_laevigata	RLG00000008926 RLG00000008930 RLG00000008933
rosa_multiflora	Rmu_co8105392.1_g000001 Rmu_co8272517.1_g000001 Rmu_sc0001999.1_g000001 Rmu_sc0003483.1_g000002 Rmu_sc0006579.1_g000005 Rmu_sc0009977.1_g000001 Rmu_sc0020288.1_g000002
rosa_roxburghii	Rroxscaffold_5G00348610
rosa_rugosa	Rorug04G0046800
rosa_samantha	Rh4AG121900 Rh4AG122500 Rh4BG115600 Rh4BG115700 Rh4CG130900 Rh4CG131000 Rh4DG115800
rosa_wichuraiana	Rw4G009970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	330
AccI	GTMKAC	1 cut(s)	317
AciI	CCGC	1 cut(s)	334
AcsI	RAATTY	1 cut(s)	197
AfaI	GTAC	2 cut(s)	20, 148
AgsI	TTSAA	2 cut(s)	409, 448
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	3 cut(s)	77, 232, 401
AluI	AGCT	3 cut(s)	77, 232, 401
Alw26I	GTCTC	1 cut(s)	302
ApeKI	GCWGC	3 cut(s)	174, 279, 398
ApoI	RAATTY	1 cut(s)	197
AspLEI	GCGC	2 cut(s)	190, 344
AspS9I	GGNCC	1 cut(s)	380
AsuC2I	CCSGG	1 cut(s)	366
AsuHPI	GGTGA	1 cut(s)	95
AsuII	TTCGAA	1 cut(s)	372
AvaII	GGWCC	1 cut(s)	380
BaeGI	GKGCMC	1 cut(s)	333
BaeI	ACNNNNGTAYC	2 cut(s)	138, 171
BanI	GGYRCC	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	167
BbvI	GCAGC	3 cut(s)	161, 291, 410
BccI	CCATC	1 cut(s)	83
BceAI	ACGGC	1 cut(s)	180
BciT130I	CCWGG	1 cut(s)	143
BcnI	CCSGG	1 cut(s)	366
BcoDI	GTCTC	1 cut(s)	302
BfaI	CTAG	4 cut(s)	207, 255, 402, 457
BfmI	CTRYAG	1 cut(s)	277
BfoI	RGCGCY	2 cut(s)	191, 345
BisI	GCNGC	3 cut(s)	175, 280, 399
BlsI	GCNGC	3 cut(s)	176, 281, 400
Bme1390I	CCNGG	2 cut(s)	143, 366
Bme18I	GGWCC	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	2 cut(s)	94, 332
BmrFI	CCNGG	2 cut(s)	143, 366
BmsI	GCATC	2 cut(s)	291, 292
BpiI	GAAGAC	1 cut(s)	167
Bpu14I	TTCGAA	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	366
BsaI	GGTCTC	1 cut(s)	302
BsaJI	CCNNGG	3 cut(s)	142, 183, 337
BsaWI	WCCGGW	2 cut(s)	95, 151
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	3 cut(s)	142, 183, 337
BseMII	CTCAG	1 cut(s)	87
BseSI	GKGCMC	1 cut(s)	333
BseXI	GCAGC	3 cut(s)	161, 291, 410
BsgI	GTGCAG	1 cut(s)	417
BshNI	GGYRCC	1 cut(s)	330
BsiSI	CCGG	3 cut(s)	96, 152, 366
BslFI	GGGAC	1 cut(s)	348
BsmAI	GTCTC	1 cut(s)	302
BsmFI	GGGAC	1 cut(s)	348
Bso31I	GGTCTC	1 cut(s)	302
Bsp119I	TTCGAA	1 cut(s)	372
Bsp1286I	GDGCHC	1 cut(s)	333
Bsp143I	GATC	1 cut(s)	273
Bsp19I	CCATGG	2 cut(s)	183, 337
BspACI	CCGC	1 cut(s)	334
BspCNI	CTCAG	1 cut(s)	86
BspLI	GGNNCC	2 cut(s)	94, 332
BspMAI	CTGCAG	1 cut(s)	281
BspT104I	TTCGAA	1 cut(s)	372
BspT107I	GGYRCC	1 cut(s)	330
BspTNI	GGTCTC	1 cut(s)	302
BssECI	CCNNGG	3 cut(s)	142, 183, 337
BssMI	GATC	1 cut(s)	273
BssT1I	CCWWGG	2 cut(s)	183, 337
Bst2UI	CCWGG	1 cut(s)	143
BstBI	TTCGAA	1 cut(s)	372
BstDEI	CTNAG	1 cut(s)	73
BstDSI	CCRYGG	2 cut(s)	183, 337
BstH2I	RGCGCY	2 cut(s)	191, 345
BstHHI	GCGC	2 cut(s)	190, 344
BstKTI	GATC	1 cut(s)	276
BstMAI	GTCTC	1 cut(s)	302
BstMBI	GATC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 285
BstNI	CCWGG	1 cut(s)	143
BstSCI	CCNGG	2 cut(s)	141, 364
BstSFI	CTRYAG	1 cut(s)	277
BstSLI	GKGCMC	1 cut(s)	333
BstV1I	GCAGC	3 cut(s)	161, 291, 410
BstV2I	GAAGAC	1 cut(s)	167
BstXI	CCANNNNNNTGG	1 cut(s)	62
BtgI	CCRYGG	2 cut(s)	183, 337
CfoI	GCGC	2 cut(s)	190, 344
Cfr13I	GGNCC	1 cut(s)	380
Csp6I	GTAC	2 cut(s)	19, 147
CviAII	CATG	3 cut(s)	37, 184, 338
CviJI	RGCY	5 cut(s)	77, 167, 232, 293, 401
CviKI_1	RGCY	5 cut(s)	77, 167, 232, 293, 401
CviQI	GTAC	2 cut(s)	19, 147
DdeI	CTNAG	1 cut(s)	73
DpnI	GATC	1 cut(s)	275
DpnII	GATC	1 cut(s)	273
Eco130I	CCWWGG	2 cut(s)	183, 337
Eco31I	GGTCTC	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	380
EcoRI	GAATTC	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	141
EcoT14I	CCWWGG	2 cut(s)	183, 337
ErhI	CCWWGG	2 cut(s)	183, 337
FaeI	CATG	3 cut(s)	40, 187, 341
FaiI	YATR	8 cut(s)	38, 61, 63, 131, 179, 185, 204, 339
FaqI	GGGAC	1 cut(s)	348
FatI	CATG	3 cut(s)	36, 183, 337
FblI	GTMKAC	1 cut(s)	317
Fnu4HI	GCNGC	3 cut(s)	175, 280, 399
Fsp4HI	GCNGC	3 cut(s)	175, 280, 399
FspBI	CTAG	4 cut(s)	207, 255, 402, 457
GlaI	GCGC	2 cut(s)	189, 343
GluI	GCNGC	3 cut(s)	175, 280, 399
HaeII	RGCGCY	2 cut(s)	191, 345
HapII	CCGG	3 cut(s)	96, 152, 366
HhaI	GCGC	2 cut(s)	190, 344
Hin1II	CATG	3 cut(s)	40, 187, 341
Hin6I	GCGC	2 cut(s)	188, 342
HinP1I	GCGC	2 cut(s)	188, 342
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HinfI	GANTC	3 cut(s)	235, 251, 319
HpaII	CCGG	3 cut(s)	96, 152, 366
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	318
Hpy188I	TCNGA	5 cut(s)	109, 196, 246, 380, 428
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	318
Hpy99I	CGWCG	1 cut(s)	319
HpyAV	CCTTC	1 cut(s)	435
HpyCH4V	TGCA	4 cut(s)	177, 279, 305, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 285
HpyF3I	CTNAG	1 cut(s)	73
Hsp92II	CATG	3 cut(s)	40, 187, 341
HspAI	GCGC	2 cut(s)	188, 342
Kzo9I	GATC	1 cut(s)	273
LpnPI	CCDG	7 cut(s)	38, 109, 128, 155, 165, 308, 379
Lsp1109I	GCAGC	3 cut(s)	161, 291, 410
LweI	GCATC	2 cut(s)	291, 292
MaeI	CTAG	4 cut(s)	207, 255, 402, 457
MalI	GATC	1 cut(s)	275
MboI	GATC	1 cut(s)	273
MboII	GAAGA	4 cut(s)	25, 98, 111, 172
MhlI	GDGCHC	1 cut(s)	333
MluCI	AATT	3 cut(s)	197, 409, 429
MlyI	GAGTC	1 cut(s)	313
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	2 cut(s)	32, 320
MslI	CAYNNNNRTG	2 cut(s)	182, 336
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	3 cut(s)	96, 152, 366
MspR9I	CCNGG	2 cut(s)	143, 366
MvaI	CCWGG	1 cut(s)	143
MwoI	GCNNNNNNNGC	2 cut(s)	212, 285
NciI	CCSGG	1 cut(s)	366
NcoI	CCATGG	2 cut(s)	183, 337
NdeII	GATC	1 cut(s)	273
NlaIII	CATG	3 cut(s)	40, 187, 341
NlaIV	GGNNCC	2 cut(s)	94, 332
NspV	TTCGAA	1 cut(s)	372
PfeI	GAWTC	2 cut(s)	235, 251
PflFI	GACNNNGTC	1 cut(s)	313
PkrI	GCNGC	3 cut(s)	176, 281, 400
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	2 cut(s)	94, 332
PspPI	GGNCC	1 cut(s)	380
PstI	CTGCAG	1 cut(s)	281
PsyI	GACNNNGTC	1 cut(s)	313
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	2 cut(s)	20, 148
RsaNI	GTAC	2 cut(s)	19, 147
RseI	CAYNNNNRTG	2 cut(s)	182, 336
SalI	GTCGAC	1 cut(s)	316
SatI	GCNGC	3 cut(s)	175, 280, 399
Sau3AI	GATC	1 cut(s)	273
Sau96I	GGNCC	1 cut(s)	380
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	2 cut(s)	143, 366
SduI	GDGCHC	1 cut(s)	333
SetI	ASST	7 cut(s)	24, 79, 144, 234, 385, 403, 446
SfaNI	GCATC	2 cut(s)	291, 292
SfcI	CTRYAG	1 cut(s)	277
SfuI	TTCGAA	1 cut(s)	372
SinI	GGWCC	1 cut(s)	380
SmiMI	CAYNNNNRTG	2 cut(s)	182, 336
Sse9I	AATT	3 cut(s)	197, 409, 429
SsiI	CCGC	1 cut(s)	334
SspMI	CTAG	4 cut(s)	207, 255, 402, 457
StyD4I	CCNGG	2 cut(s)	141, 364
StyI	CCWWGG	2 cut(s)	183, 337
TaqI	TCGA	4 cut(s)	223, 272, 317, 372
TasI	AATT	3 cut(s)	197, 409, 429
TfiI	GAWTC	2 cut(s)	235, 251
TseI	GCWGC	3 cut(s)	174, 279, 398
TspDTI	ATGAA	1 cut(s)	25
Tth111I	GACNNNGTC	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	380
XapI	RAATTY	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	317
XspI	CTAG	4 cut(s)	207, 255, 402, 457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.