Rmu_co8272517.1_g000001

Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8272517.1
OG0006930
Physical Location & Seq
Reverse (-)
303 .. 605
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8272517.1_g000001.1.cds

Sequence Viewer

Length: 303 bp
atggcaaacaacaatcagtacctcctgataatcttcatgttattcttagatctttgcctaatatatggcaactcctcagctgttggtgaagatggaaccggaagaaaatcacagcaaatggtaaatgtgggcgtaattcttgacctgggtactccggttgggaagacggctcaacgctgcatatccatggccctctcggatttctatgctagaaatgccaactatcgaacaaagctgaatcttactgtgaaggattctaggaatgatgttgtttctgcagcatcagcaggtattattacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

100

Amino Acids

10.82

Weight (kDa)

8.68

Isoelectric Point (pI)

23.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 278
AfaI GTAC 2 cut(s) 20, 151
AjnI CCWGG 1 cut(s) 144
AluBI AGCT 2 cut(s) 80, 235
AluI AGCT 2 cut(s) 80, 235
AoxI GGCC 1 cut(s) 189
ApeKI GCWGC 2 cut(s) 177, 278
AspS9I GGNCC 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 98
BaeI ACNNNNGTAYC 2 cut(s) 141, 174
BbsI GAAGAC 1 cut(s) 170
BbvCI CCTCAGC 1 cut(s) 76
BbvI GCAGC 2 cut(s) 164, 290
BccI CCATC 1 cut(s) 86
BceAI ACGGC 1 cut(s) 183
BciT130I CCWGG 1 cut(s) 146
BfaI CTAG 2 cut(s) 210, 258
BfmI CTRYAG 1 cut(s) 276
BfuAI ACCTGC 1 cut(s) 278
BglII AGATCT 1 cut(s) 49
BisI GCNGC 2 cut(s) 178, 279
BlsI GCNGC 2 cut(s) 179, 280
Bme1390I CCNGG 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 1 cut(s) 290
BpiI GAAGAC 1 cut(s) 170
Bpu10I CCTNAGC 1 cut(s) 76
BsaJI CCNNGG 2 cut(s) 145, 186
BsaWI WCCGGW 2 cut(s) 98, 154
BseBI CCWGG 1 cut(s) 146
BseDI CCNNGG 2 cut(s) 145, 186
BseMII CTCAG 1 cut(s) 90
BseRI GAGGAG 1 cut(s) 64
BseXI GCAGC 2 cut(s) 164, 290
BshFI GGCC 1 cut(s) 191
BsiSI CCGG 2 cut(s) 99, 155
BsnI GGCC 1 cut(s) 191
Bsp143I GATC 1 cut(s) 49
Bsp19I CCATGG 1 cut(s) 186
BspANI GGCC 1 cut(s) 191
BspCNI CTCAG 1 cut(s) 89
BspLI GGNNCC 1 cut(s) 97
BspMAI CTGCAG 1 cut(s) 280
BspMI ACCTGC 1 cut(s) 278
BssECI CCNNGG 2 cut(s) 145, 186
BssMI GATC 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 247
BstDEI CTNAG 2 cut(s) 46, 76
BstDSI CCRYGG 1 cut(s) 186
BstKTI GATC 1 cut(s) 52
BstMBI GATC 1 cut(s) 49
BstMWI GCNNNNNNNGC 2 cut(s) 215, 284
BstNI CCWGG 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 144
BstSFI CTRYAG 1 cut(s) 276
BstV1I GCAGC 2 cut(s) 164, 290
BstV2I GAAGAC 1 cut(s) 170
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BsuRI GGCC 1 cut(s) 191
BtgI CCRYGG 1 cut(s) 186
BveI ACCTGC 1 cut(s) 278
Cfr13I GGNCC 1 cut(s) 190
Csp6I GTAC 2 cut(s) 19, 150
CviAII CATG 2 cut(s) 37, 187
CviJI RGCY 4 cut(s) 80, 170, 191, 235
CviKI_1 RGCY 4 cut(s) 80, 170, 191, 235
CviQI GTAC 2 cut(s) 19, 150
DdeI CTNAG 2 cut(s) 46, 76
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 2 cut(s) 40, 190
FaiI YATR 6 cut(s) 38, 64, 66, 182, 188, 207
FatI CATG 2 cut(s) 36, 186
Fnu4HI GCNGC 2 cut(s) 178, 279
Fsp4HI GCNGC 2 cut(s) 178, 279
FspBI CTAG 2 cut(s) 210, 258
GluI GCNGC 2 cut(s) 178, 279
HaeIII GGCC 1 cut(s) 191
HapII CCGG 2 cut(s) 99, 155
Hin1II CATG 2 cut(s) 40, 190
HinfI GANTC 2 cut(s) 238, 254
HpaII CCGG 2 cut(s) 99, 155
HphI GGTGA 1 cut(s) 98
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 2 cut(s) 25, 140
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 247
HpyCH4V TGCA 2 cut(s) 180, 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 215, 284
HpyF3I CTNAG 2 cut(s) 46, 76
Hsp92II CATG 2 cut(s) 40, 190
Kzo9I GATC 1 cut(s) 49
LpnPI CCDG 6 cut(s) 38, 112, 131, 158, 168, 273
Lsp1109I GCAGC 2 cut(s) 164, 290
LweI GCATC 1 cut(s) 290
MaeI CTAG 2 cut(s) 210, 258
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 4 cut(s) 25, 101, 114, 175
MflI RGATCY 1 cut(s) 49
MluCI AATT 1 cut(s) 135
MnlI CCTC 3 cut(s) 32, 85, 203
MslI CAYNNNNRTG 1 cut(s) 185
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 2 cut(s) 99, 155
MspR9I CCNGG 1 cut(s) 146
MvaI CCWGG 1 cut(s) 146
MwoI GCNNNNNNNGC 2 cut(s) 215, 284
NcoI CCATGG 1 cut(s) 186
NdeII GATC 1 cut(s) 49
NlaIII CATG 2 cut(s) 40, 190
NlaIV GGNNCC 1 cut(s) 97
PfeI GAWTC 2 cut(s) 238, 254
PkrI GCNGC 2 cut(s) 179, 280
Psp6I CCWGG 1 cut(s) 144
PspGI CCWGG 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 1 cut(s) 190
PstI CTGCAG 1 cut(s) 280
PsuI RGATCY 1 cut(s) 49
PvuII CAGCTG 1 cut(s) 80
RsaI GTAC 2 cut(s) 20, 151
RsaNI GTAC 2 cut(s) 19, 150
RseI CAYNNNNRTG 1 cut(s) 185
SatI GCNGC 2 cut(s) 178, 279
Sau3AI GATC 1 cut(s) 49
Sau96I GGNCC 1 cut(s) 190
ScrFI CCNGG 1 cut(s) 146
SetI ASST 5 cut(s) 24, 82, 147, 237, 292
SfaNI GCATC 1 cut(s) 290
SfcI CTRYAG 1 cut(s) 276
SmiMI CAYNNNNRTG 1 cut(s) 185
Sse9I AATT 1 cut(s) 135
SspMI CTAG 2 cut(s) 210, 258
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 247
TaqI TCGA 1 cut(s) 226
TasI AATT 1 cut(s) 135
TfiI GAWTC 2 cut(s) 238, 254
TseI GCWGC 2 cut(s) 177, 278
TspDTI ATGAA 1 cut(s) 25
XspI CTAG 2 cut(s) 210, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.