Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006930

Physical Location & Seq

Genomic Coordinates Forward (+)

23560628 .. 23562150

Gene Structure 1523 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37566

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGCAAACAACAATCAGTACCTCCTGATAATCTTCATGTTATTAGATGTTTGCCTAATCTATGGCAACTCCTCAGCTGTTGGTGAAGATGGAACCGGAAGAAAATCAGAGCAAATGGTAAATGTGGGCATAATTCTTGACCTGGGTACTCCGGTTGGGAAGACGTCTCAACGCTGCATATCCATGGCGCTCTCGGAAGTCTATGCTAGAAATGCCAACTATCGAACAAAGCTGAATCTTACTCTGAAAGATTCTAGGAATGATGTTGTTTCTGCAGCATCAGCACCTTTAGAATTGTTAAATAATGAAGAGGTGCAACCTATTGTAGGTCCCCAAACATCAAGCCAAGCTAAGTTTGTCACAAGTCTTGGAGAGAAAGCACAAATCCCCATTATCTCGTTTTCAGCCACAAGCCCTTCTTTGTCTCCAACTATGAACTGTTTCTTCATCAGGACAGCTCTCGATGACTCTTCTCAAGTAAAAGCCATCACATCCATTGTTAAAGCATATGGGTGGCATGAAGTTGTTCTTATATATGAAGACACAGAATATGGAAATGTTTTGATTCCCTATATAATTGATGCCTTTCAACAAATTGCCTTACAGAAGTGTTATTTCCCCATCATCCAGTCGCTTAAACATTTTGAGAAAGCTTATCAAGTTAATGGCAGTGCAGACGAGGGCATGATGAGAGAAGGGTATGCTTCGATCATAACTGATGGATTATCATCTGGGTTACATCCACTGGAGGGAAAGGTCATTGATTCAATGGAAGGTGTGGTGGGCGTAACGCCCTATGTACCAATGTCAACAGGTCTTAATGATTTTGAGATCAGATGGAAACAGAGCACTATTGGGACTACAAAGCAGACTCATTGTAAGATAAGCATATTTGGCTTATGGGCTTATGATACAGTTTGGGCATTAGCTGAGGCCGTAGAACTCATTGAGTTGCAGGCAAATTATTCCAGTGCTTTAAAGAACAATAATAAAGGGAAAAGAACAGGTGGAATATTGAGCCAAATTGGTGTGTCTAAATCAGGTCCAAGGCTTCTCCAAACATTGCTGAGGACCAGATTTGAAGGCTTAAGTGGGAGATTTAGATTGATTGATCAACAATTTCAACCTGCAGCCTTTCAAATATTCGATGTCATGAGTAAGAGGGAAAGAGTGATTGGATATTGGACCCCCAACAAAGAATCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

402

Amino Acids

44.43

Weight (kDa)

6.47

Isoelectric Point (pI)

35.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	40 - 199	3.3e-13	Periplasmic binding protein
ANF_receptor	PF01094	58 - 199	4e-34	Receptor family ligand binding region
ANF_receptor	PF01094	225 - 384	6.5e-19	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006930)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31990 FvH4_4g31991
prunus_persica	Prupe.1G094800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0404041 RchiOBHm_Chr4g0404051 RchiOBHm_Chr4g0404091
rosa_laevigata	RLG00000008926 RLG00000008930 RLG00000008933
rosa_multiflora	Rmu_co8105392.1_g000001 Rmu_co8272517.1_g000001 Rmu_sc0001999.1_g000001 Rmu_sc0003483.1_g000002 Rmu_sc0006579.1_g000005 Rmu_sc0009977.1_g000001 Rmu_sc0020288.1_g000002
rosa_roxburghii	Rroxscaffold_5G00348610
rosa_rugosa	Rorug04G0046800
rosa_samantha	Rh4AG121900 Rh4AG122500 Rh4BG115600 Rh4BG115700 Rh4CG130900 Rh4CG131000 Rh4DG115800
rosa_wichuraiana	Rw4G009970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	167
Acc36I	ACCTGC	1 cut(s)	1135
AcyI	GRCGYC	1 cut(s)	164
AfaI	GTAC	3 cut(s)	20, 148, 801
AfiI	CCNNNNNNNGG	2 cut(s)	326, 749
AflII	CTTAAG	1 cut(s)	1087
AgsI	TTSAA	5 cut(s)	590, 768, 1082, 1124, 1139
AjnI	CCWGG	1 cut(s)	141
AjuI	GAANNNNNNNTTGG	2 cut(s)	1158, 1190
AluBI	AGCT	6 cut(s)	77, 232, 350, 458, 653, 929
AluI	AGCT	6 cut(s)	77, 232, 350, 458, 653, 929
Alw21I	GWGCWC	1 cut(s)	851
Alw26I	GTCTC	2 cut(s)	171, 429
AoxI	GGCC	1 cut(s)	933
ApeKI	GCWGC	3 cut(s)	174, 275, 1130
Asp700I	GAANNNNTTC	2 cut(s)	440, 525
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	4 cut(s)	329, 1043, 1071, 1185
AsuHPI	GGTGA	1 cut(s)	95
AvaII	GGWCC	4 cut(s)	329, 1043, 1071, 1185
BaeI	ACNNNNGTAYC	2 cut(s)	138, 171
BbsI	GAAGAC	2 cut(s)	167, 546
Bbv12I	GWGCWC	1 cut(s)	851
BbvCI	CCTCAGC	3 cut(s)	73, 930, 1067
BbvI	GCAGC	3 cut(s)	161, 287, 1142
BccI	CCATC	5 cut(s)	83, 494, 629, 713, 831
BceAI	ACGGC	1 cut(s)	920
BciT130I	CCWGG	1 cut(s)	143
BclI	TGATCA	1 cut(s)	1111
BcoDI	GTCTC	2 cut(s)	171, 429
BfaI	CTAG	2 cut(s)	207, 255
BfmI	CTRYAG	2 cut(s)	273, 1128
BfoI	RGCGCY	1 cut(s)	191
BfrI	CTTAAG	1 cut(s)	1087
BfuAI	ACCTGC	1 cut(s)	1135
BisI	GCNGC	3 cut(s)	175, 276, 1131
BlsI	GCNGC	3 cut(s)	176, 277, 1132
Bme1390I	CCNGG	1 cut(s)	143
Bme18I	GGWCC	4 cut(s)	329, 1043, 1071, 1185
BmgT120I	GGNCC	4 cut(s)	329, 1043, 1071, 1185
BmiI	GGNNCC	3 cut(s)	94, 331, 1187
BmrFI	CCNGG	1 cut(s)	143
BmsI	GCATC	2 cut(s)	287, 571
BpiI	GAAGAC	2 cut(s)	167, 546
BpmI	CTGGAG	1 cut(s)	767
Bpu10I	CCTNAGC	3 cut(s)	73, 930, 1067
BpuEI	CTTGAG	1 cut(s)	459
BsaBI	GATNNNNATC	1 cut(s)	727
BsaHI	GRCGYC	1 cut(s)	164
BsaJI	CCNNGG	3 cut(s)	142, 183, 1046
BsaWI	WCCGGW	2 cut(s)	95, 151
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 749
Bse1I	ACTGG	3 cut(s)	628, 750, 969
Bse3DI	GCAATG	1 cut(s)	1061
Bse8I	GATNNNNATC	1 cut(s)	727
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	3 cut(s)	142, 183, 1046
BseGI	GGATG	3 cut(s)	491, 624, 739
BseJI	GATNNNNATC	1 cut(s)	727
BseLI	CCNNNNNNNGG	2 cut(s)	326, 749
BseMI	GCAATG	1 cut(s)	1061
BseMII	CTCAG	3 cut(s)	87, 921, 1058
BseNI	ACTGG	3 cut(s)	628, 750, 969
BseRI	GAGGAG	1 cut(s)	61
BseXI	GCAGC	3 cut(s)	161, 287, 1142
BsgI	GTGCAG	1 cut(s)	693
BshFI	GGCC	1 cut(s)	935
BsiHKAI	GWGCWC	1 cut(s)	851
BsiSI	CCGG	2 cut(s)	96, 152
BslFI	GGGAC	2 cut(s)	315, 871
BslI	CCNNNNNNNGG	2 cut(s)	326, 749
BsmAI	GTCTC	2 cut(s)	171, 429
BsmBI	CGTCTC	1 cut(s)	171
BsmFI	GGGAC	2 cut(s)	315, 871
BsnI	GGCC	1 cut(s)	935
Bsp1286I	GDGCHC	1 cut(s)	851
Bsp143I	GATC	3 cut(s)	708, 831, 1111
Bsp19I	CCATGG	1 cut(s)	183
BspANI	GGCC	1 cut(s)	935
BspCNI	CTCAG	3 cut(s)	86, 922, 1059
BspHI	TCATGA	1 cut(s)	1152
BspLI	GGNNCC	3 cut(s)	94, 331, 1187
BspMAI	CTGCAG	2 cut(s)	277, 1132
BspMI	ACCTGC	1 cut(s)	1135
BspTI	CTTAAG	1 cut(s)	1087
BsrDI	GCAATG	1 cut(s)	1061
BsrI	ACTGG	3 cut(s)	628, 750, 969
BssECI	CCNNGG	3 cut(s)	142, 183, 1046
BssMI	GATC	3 cut(s)	708, 831, 1111
BssNI	GRCGYC	1 cut(s)	164
BssT1I	CCWWGG	2 cut(s)	183, 1046
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	2 cut(s)	440, 916
Bst6I	CTCTTC	2 cut(s)	303, 475
BstACI	GRCGYC	1 cut(s)	164
BstAFI	CTTAAG	1 cut(s)	1087
BstC8I	GCNNGC	1 cut(s)	957
BstDEI	CTNAG	4 cut(s)	73, 351, 930, 1067
BstDSI	CCRYGG	1 cut(s)	183
BstENI	CCTNNNNNAGG	1 cut(s)	324
BstF5I	GGATG	3 cut(s)	491, 624, 739
BstH2I	RGCGCY	1 cut(s)	191
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	3 cut(s)	711, 834, 1114
BstMAI	GTCTC	2 cut(s)	171, 429
BstMBI	GATC	3 cut(s)	708, 831, 1111
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 281, 894
BstNI	CCWGG	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	141
BstSFI	CTRYAG	2 cut(s)	273, 1128
BstV1I	GCAGC	3 cut(s)	161, 287, 1142
BstV2I	GAAGAC	2 cut(s)	167, 546
BsuRI	GGCC	1 cut(s)	935
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	3 cut(s)	491, 624, 739
BtsI	GCAGTG	1 cut(s)	676
BtsIMutI	CAGTG	3 cut(s)	676, 743, 976
BveI	ACCTGC	1 cut(s)	1135
Cac8I	GCNNGC	1 cut(s)	957
CciI	TCATGA	1 cut(s)	1152
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	4 cut(s)	329, 1043, 1071, 1185
Csp6I	GTAC	3 cut(s)	19, 147, 800
CviAII	CATG	5 cut(s)	37, 184, 518, 685, 1153
CviQI	GTAC	3 cut(s)	19, 147, 800
DdeI	CTNAG	4 cut(s)	73, 351, 930, 1067
DpnI	GATC	3 cut(s)	710, 833, 1113
DpnII	GATC	3 cut(s)	708, 831, 1111
DraI	TTTAAA	1 cut(s)	978
Eam1104I	CTCTTC	2 cut(s)	303, 475
EarI	CTCTTC	2 cut(s)	303, 475
Eco130I	CCWWGG	2 cut(s)	183, 1046
Eco47I	GGWCC	4 cut(s)	329, 1043, 1071, 1185
EcoNI	CCTNNNNNAGG	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	141
EcoT14I	CCWWGG	2 cut(s)	183, 1046
ErhI	CCWWGG	2 cut(s)	183, 1046
Esp3I	CGTCTC	1 cut(s)	171
FaeI	CATG	5 cut(s)	40, 187, 521, 688, 1156
FalI	AAGNNNNNCTT	4 cut(s)	403, 435, 513, 545
FaqI	GGGAC	2 cut(s)	315, 871
FatI	CATG	5 cut(s)	36, 183, 517, 684, 1152
FauNDI	CATATG	1 cut(s)	508
FbaI	TGATCA	1 cut(s)	1111
Fnu4HI	GCNGC	3 cut(s)	175, 276, 1131
FokI	GGATG	3 cut(s)	478, 611, 726
Fsp4HI	GCNGC	3 cut(s)	175, 276, 1131
FspBI	CTAG	2 cut(s)	207, 255
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	3 cut(s)	175, 276, 1131
GsuI	CTGGAG	1 cut(s)	767
HaeII	RGCGCY	1 cut(s)	191
HaeIII	GGCC	1 cut(s)	935
HapII	CCGG	2 cut(s)	96, 152
HhaI	GCGC	1 cut(s)	190
Hin1I	GRCGYC	1 cut(s)	164
Hin1II	CATG	5 cut(s)	40, 187, 521, 688, 1156
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HincII	GTYRAC	1 cut(s)	810
HindII	GTYRAC	1 cut(s)	810
HindIII	AAGCTT	1 cut(s)	651
HinfI	GANTC	7 cut(s)	235, 251, 467, 565, 764, 871, 1199
HpaII	CCGG	2 cut(s)	96, 152
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	810
Hpy188I	TCNGA	4 cut(s)	109, 196, 246, 836
Hpy188III	TCNNGA	5 cut(s)	25, 137, 451, 461, 1153
Hpy8I	GTNNAC	1 cut(s)	810
HpyAV	CCTTC	4 cut(s)	426, 689, 767, 1076
HpyCH4III	ACNGT	2 cut(s)	440, 916
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	6 cut(s)	177, 275, 316, 674, 955, 1130
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 281, 894
HpyF3I	CTNAG	4 cut(s)	73, 351, 930, 1067
HpySE526I	ACGT	1 cut(s)	164
Hsp92I	GRCGYC	1 cut(s)	164
Hsp92II	CATG	5 cut(s)	40, 187, 521, 688, 1156
HspAI	GCGC	1 cut(s)	188
Ksp22I	TGATCA	1 cut(s)	1111
Kzo9I	GATC	3 cut(s)	708, 831, 1111
Lsp1109I	GCAGC	3 cut(s)	161, 287, 1142
LweI	GCATC	2 cut(s)	287, 571
MaeI	CTAG	2 cut(s)	207, 255
MaeII	ACGT	1 cut(s)	164
MaeIII	GTNAC	3 cut(s)	358, 735, 787
MalI	GATC	3 cut(s)	710, 833, 1113
MboI	GATC	3 cut(s)	708, 831, 1111
MboII	GAAGA	8 cut(s)	25, 98, 111, 172, 320, 436, 462, 551
MhlI	GDGCHC	1 cut(s)	851
MluCI	AATT	7 cut(s)	132, 293, 576, 594, 961, 1023, 1118
MlyI	GAGTC	2 cut(s)	461, 865
MmeI	TCCRAC	1 cut(s)	452
MnlI	CCTC	8 cut(s)	32, 82, 304, 673, 742, 925, 1062, 1155
MroXI	GAANNNNTTC	2 cut(s)	440, 525
MseI	TTAA	7 cut(s)	299, 501, 636, 663, 819, 977, 1088
MslI	CAYNNNNRTG	2 cut(s)	182, 511
MspA1I	CMGCKG	1 cut(s)	77
MspCI	CTTAAG	1 cut(s)	1087
MspI	CCGG	2 cut(s)	96, 152
MspR9I	CCNGG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	143
MwoI	GCNNNNNNNGC	3 cut(s)	212, 281, 894
NcoI	CCATGG	1 cut(s)	183
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	3 cut(s)	708, 831, 1111
NlaIII	CATG	5 cut(s)	40, 187, 521, 688, 1156
NlaIV	GGNNCC	3 cut(s)	94, 331, 1187
NmuCI	GTSAC	1 cut(s)	358
PagI	TCATGA	1 cut(s)	1152
PdmI	GAANNNNTTC	2 cut(s)	440, 525
PfeI	GAWTC	5 cut(s)	235, 251, 565, 764, 1199
PkrI	GCNGC	3 cut(s)	176, 277, 1132
PleI	GAGTC	2 cut(s)	461, 865
PpsI	GAGTC	2 cut(s)	461, 865
PpuMI	RGGWCCY	1 cut(s)	329
Psp5II	RGGWCCY	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	3 cut(s)	94, 331, 1187
PspPI	GGNCC	4 cut(s)	329, 1043, 1071, 1185
PspPPI	RGGWCCY	1 cut(s)	329
PstI	CTGCAG	2 cut(s)	277, 1132
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	3 cut(s)	20, 148, 801
RsaNI	GTAC	3 cut(s)	19, 147, 800
RseI	CAYNNNNRTG	2 cut(s)	182, 511
SaqAI	TTAA	7 cut(s)	299, 501, 636, 663, 819, 977, 1088
SatI	GCNGC	3 cut(s)	175, 276, 1131
Sau3AI	GATC	3 cut(s)	708, 831, 1111
Sau96I	GGNCC	4 cut(s)	329, 1043, 1071, 1185
SchI	GAGTC	2 cut(s)	461, 865
ScrFI	CCNGG	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	851
SfaNI	GCATC	2 cut(s)	287, 571
SfcI	CTRYAG	2 cut(s)	273, 1128
SinI	GGWCC	4 cut(s)	329, 1043, 1071, 1185
SmiMI	CAYNNNNRTG	2 cut(s)	182, 511
SmlI	CTYRAG	2 cut(s)	474, 1087
SmoI	CTYRAG	2 cut(s)	474, 1087
Sse9I	AATT	7 cut(s)	132, 293, 576, 594, 961, 1023, 1118
SspI	AATATT	2 cut(s)	1014, 1143
SspMI	CTAG	2 cut(s)	207, 255
StyD4I	CCNGG	1 cut(s)	141
StyI	CCWWGG	2 cut(s)	183, 1046
TaaI	ACNGT	2 cut(s)	440, 916
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	4 cut(s)	223, 462, 707, 1146
TasI	AATT	7 cut(s)	132, 293, 576, 594, 961, 1023, 1118
TfiI	GAWTC	5 cut(s)	235, 251, 565, 764, 1199
Tru1I	TTAA	7 cut(s)	299, 501, 636, 663, 819, 977, 1088
Tru9I	TTAA	7 cut(s)	299, 501, 636, 663, 819, 977, 1088
TscAI	CASTG	3 cut(s)	676, 750, 976
TseFI	GTSAC	1 cut(s)	358
TseI	GCWGC	3 cut(s)	174, 275, 1130
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	6 cut(s)	25, 321, 436, 449, 534, 552
TspRI	CASTG	3 cut(s)	676, 750, 976
Vha464I	CTTAAG	1 cut(s)	1087
VpaK11BI	GGWCC	4 cut(s)	329, 1043, 1071, 1185
XagI	CCTNNNNNAGG	1 cut(s)	324
XmnI	GAANNNNTTC	2 cut(s)	440, 525
XspI	CTAG	2 cut(s)	207, 255
ZraI	GACGTC	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.