Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0006930

Physical Location & Seq

Genomic Coordinates Forward (+)

26537215 .. 26541313

Gene Structure 4099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG122500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGCGAACAACAATCAGTACCTTCTGATAATCTTCATGTTATTAGATGTTTGCCTAATCTATGGCAACTCCTCAGCTGTTGGTGAAGATGGAACCGGAAGAAAATCACAGCAAATGGTAAATGTGGGCGTAATTCTTGACCTGGGTACTCCGGTTGGAAAGACAGCTCAACGCTGCATATCAATGGCACTCTCGGAATTCTATGCTAGAAATGCCAACTATCGAACAAAGCTGAATCTTACCGTGAAGGATTCTAGGAATGATGTTGTTTCTGCAGCATCAGCAGCCTTAGAAAGAGTGCCATTTGCACTTCCACACAAGTTCATTCCATTCACCAATGGTTCATCAAGAGAGGCTGCAGGGACTTATGACGATCTTCTTTACCAGATTAAGTTGAATGCCTTCCCACTAGGCTCCCCTCTTGTTGCTTACTTTTCGAGGGCAATCTTGAAAGTGACTCAAGATCATGAGACAATGGAACAACTGCAACGGAAGTATTTCCCAGATGAATCCAAATGTCAAGATAAGAGTTCCACATTCTCTTCAGAAAATCCAAGTCTAAGCGTGTACAGCTTTGCAGGCCTGTTCATCACCACAGCGGTCATTTCAATTTCTTCATGCTCGATATCTATACTTTCCAAGTTCCTGTATAAACAGTGGCCTGCGTTGAATCCCATCCATGCAGAAGCCAGCTCACTCTTGTCAAAAATATCAAAGCATTTTCATCAAAACAAAGCAACTGATGAAAAGATAACTGCTTCATCTGCAACAAATGCTAGAGGTGGTGAAGCTTCACAGATGCTAGAGTGTTTCCACCAAGAACTACACAATGTTCCAACAGATGAACATAAGGTGCTGTCCAGAGCAGTTAGCAGGCGTTTAGATGAAAGAGATTCGGAAATGAAGAGGATTGAAGAGGAGCAGAGAAGGATTAGGGAAGGCCATGAAGTGAGTTTGGCTCTTCTTCACAGGGCTGAACTTGATAAATTACTTAAGGTGCCTGTGCAGGAGATCATAGCAGTGGAGATGGACAAGGCCATACAGAGGGCTGGGTTGTTACACTTGGGACCTTCTTTGGCTGCCCTGCTCGGAATGGCAGGTGAAACGAACAGAAGTATATCACAGTCGACAAACCAGGGGAATGAAGTGAATGCATCAACCAGTCTTCATGTAGCTACTATTGCTAATCCGGATTATGTGGCAAAGCCTGATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

405

Amino Acids

44.67

Weight (kDa)

6.87

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006930)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g31990 FvH4_4g31991
prunus_persica	Prupe.1G094800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0404041 RchiOBHm_Chr4g0404051 RchiOBHm_Chr4g0404091
rosa_laevigata	RLG00000008926 RLG00000008930 RLG00000008933
rosa_multiflora	Rmu_co8105392.1_g000001 Rmu_co8272517.1_g000001 Rmu_sc0001999.1_g000001 Rmu_sc0003483.1_g000002 Rmu_sc0006579.1_g000005 Rmu_sc0009977.1_g000001 Rmu_sc0020288.1_g000002
rosa_roxburghii	Rroxscaffold_5G00348610
rosa_rugosa	Rorug04G0046800
rosa_samantha	Rh4AG121900 Rh4AG122500 Rh4BG115600 Rh4BG115700 Rh4CG130900 Rh4CG131000 Rh4DG115800
rosa_wichuraiana	Rw4G009970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1088
Acc36I	ACCTGC	1 cut(s)	1088
AccB1I	GGYRCC	1 cut(s)	997
AccI	GTMKAC	1 cut(s)	1127
AccIII	TCCGGA	1 cut(s)	1189
AciI	CCGC	1 cut(s)	599
AcsI	RAATTY	1 cut(s)	197
AcuI	CTGAAG	1 cut(s)	528
AfaI	GTAC	3 cut(s)	20, 148, 569
AfiI	CCNNNNNNNGG	1 cut(s)	1044
AflII	CTTAAG	1 cut(s)	992
AgsI	TTSAA	5 cut(s)	397, 451, 609, 670, 914
AjnI	CCWGG	2 cut(s)	141, 1134
AluBI	AGCT	7 cut(s)	77, 167, 232, 573, 693, 791, 1175
AluI	AGCT	7 cut(s)	77, 167, 232, 573, 693, 791, 1175
Alw26I	GTCTC	1 cut(s)	464
Aor13HI	TCCGGA	1 cut(s)	1189
AoxI	GGCC	4 cut(s)	580, 659, 940, 1035
ApeKI	GCWGC	5 cut(s)	174, 275, 284, 356, 1079
ApoI	RAATTY	1 cut(s)	197
Asp700I	GAANNNNTTC	2 cut(s)	401, 497
AspS9I	GGNCC	1 cut(s)	1067
AsuHPI	GGTGA	5 cut(s)	95, 325, 583, 797, 1112
AvaII	GGWCC	1 cut(s)	1067
BaeI	ACNNNNGTAYC	2 cut(s)	138, 171
BanI	GGYRCC	1 cut(s)	997
BbsI	GAAGAC	1 cut(s)	1157
BbvCI	CCTCAGC	1 cut(s)	73
BbvI	GCAGC	5 cut(s)	161, 287, 296, 343, 1066
BccI	CCATC	3 cut(s)	83, 683, 1021
BciT130I	CCWGG	2 cut(s)	143, 1136
BcoDI	GTCTC	1 cut(s)	464
BfaI	CTAG	5 cut(s)	207, 255, 410, 777, 803
BfmI	CTRYAG	2 cut(s)	273, 357
BfrI	CTTAAG	1 cut(s)	992
BfuAI	ACCTGC	1 cut(s)	1088
BisI	GCNGC	5 cut(s)	175, 276, 285, 357, 1080
BlsI	GCNGC	5 cut(s)	176, 277, 286, 358, 1081
Bme1390I	CCNGG	2 cut(s)	143, 1136
Bme18I	GGWCC	1 cut(s)	1067
BmgT120I	GGNCC	1 cut(s)	1067
BmiI	GGNNCC	4 cut(s)	94, 415, 999, 1068
BmrFI	CCNGG	2 cut(s)	143, 1136
BmsI	GCATC	3 cut(s)	287, 789, 1163
BpiI	GAAGAC	1 cut(s)	1157
BplI	GAGNNNNNCTC	2 cut(s)	943, 975
Bpu10I	CCTNAGC	1 cut(s)	73
BpuEI	CTTGAG	1 cut(s)	444
BsaJI	CCNNGG	2 cut(s)	142, 1135
BsaWI	WCCGGW	3 cut(s)	95, 151, 1189
Bsc4I	CCNNNNNNNGG	1 cut(s)	1044
Bse1I	ACTGG	1 cut(s)	1161
BseAI	TCCGGA	1 cut(s)	1189
BseBI	CCWGG	2 cut(s)	143, 1136
BseDI	CCNNGG	2 cut(s)	142, 1135
BseGI	GGATG	1 cut(s)	675
BseLI	CCNNNNNNNGG	1 cut(s)	1044
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	1161
BseRI	GAGGAG	2 cut(s)	61, 932
BseXI	GCAGC	5 cut(s)	161, 287, 296, 343, 1066
BseYI	CCCAGC	1 cut(s)	1049
BsgI	GTGCAG	1 cut(s)	1025
BshFI	GGCC	4 cut(s)	582, 661, 942, 1037
BshNI	GGYRCC	1 cut(s)	997
BsiSI	CCGG	3 cut(s)	96, 152, 1190
BslFI	GGGAC	2 cut(s)	376, 1080
BslI	CCNNNNNNNGG	1 cut(s)	1044
BsmAI	GTCTC	1 cut(s)	464
BsmFI	GGGAC	2 cut(s)	376, 1080
BsmI	GAATGC	2 cut(s)	403, 1156
BsnI	GGCC	4 cut(s)	582, 661, 942, 1037
Bsp13I	TCCGGA	1 cut(s)	1189
Bsp1407I	TGTACA	1 cut(s)	567
Bsp143I	GATC	3 cut(s)	373, 463, 1011
BspACI	CCGC	1 cut(s)	599
BspANI	GGCC	4 cut(s)	582, 661, 942, 1037
BspCNI	CTCAG	1 cut(s)	86
BspEI	TCCGGA	1 cut(s)	1189
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	4 cut(s)	94, 415, 999, 1068
BspMAI	CTGCAG	2 cut(s)	277, 361
BspMI	ACCTGC	1 cut(s)	1088
BspQI	GCTCTTC	1 cut(s)	966
BspT107I	GGYRCC	1 cut(s)	997
BspTI	CTTAAG	1 cut(s)	992
BsrGI	TGTACA	1 cut(s)	567
BsrI	ACTGG	1 cut(s)	1161
BssECI	CCNNGG	2 cut(s)	142, 1135
BssMI	GATC	3 cut(s)	373, 463, 1011
Bst2UI	CCWGG	2 cut(s)	143, 1136
Bst4CI	ACNGT	3 cut(s)	244, 657, 1125
Bst6I	CTCTTC	4 cut(s)	547, 899, 909, 966
BstAFI	CTTAAG	1 cut(s)	992
BstAPI	GCANNNNNTGC	1 cut(s)	773
BstAUI	TGTACA	1 cut(s)	567
BstC8I	GCNNGC	4 cut(s)	580, 663, 691, 875
BstDEI	CTNAG	3 cut(s)	73, 289, 560
BstF5I	GGATG	1 cut(s)	675
BstKTI	GATC	3 cut(s)	376, 466, 1014
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	3 cut(s)	373, 463, 1011
BstMWI	GCNNNNNNNGC	8 cut(s)	212, 281, 284, 570, 579, 764, 773, 1181
BstNI	CCWGG	2 cut(s)	143, 1136
BstSCI	CCNGG	2 cut(s)	141, 1134
BstSFI	CTRYAG	2 cut(s)	273, 357
BstV1I	GCAGC	5 cut(s)	161, 287, 296, 343, 1066
BstV2I	GAAGAC	1 cut(s)	1157
BsuRI	GGCC	4 cut(s)	582, 661, 942, 1037
BtsCI	GGATG	1 cut(s)	675
BtsI	GCAGTG	1 cut(s)	1026
BtsIMutI	CAGTG	2 cut(s)	662, 1026
BveI	ACCTGC	1 cut(s)	1088
Cac8I	GCNNGC	4 cut(s)	580, 663, 691, 875
CciI	TCATGA	1 cut(s)	466
Cfr13I	GGNCC	1 cut(s)	1067
Csp6I	GTAC	3 cut(s)	19, 147, 568
CviAII	CATG	6 cut(s)	37, 467, 618, 680, 944, 1169
CviQI	GTAC	3 cut(s)	19, 147, 568
DdeI	CTNAG	3 cut(s)	73, 289, 560
DpnI	GATC	3 cut(s)	375, 465, 1013
DpnII	GATC	3 cut(s)	373, 463, 1011
Eam1104I	CTCTTC	4 cut(s)	547, 899, 909, 966
EarI	CTCTTC	4 cut(s)	547, 899, 909, 966
Eco147I	AGGCCT	1 cut(s)	582
Eco32I	GATATC	1 cut(s)	627
Eco47I	GGWCC	1 cut(s)	1067
Eco57I	CTGAAG	1 cut(s)	528
EcoO109I	RGGNCCY	1 cut(s)	1067
EcoRI	GAATTC	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	141, 1134
EcoRV	GATATC	1 cut(s)	627
EcoT22I	ATGCAT	1 cut(s)	1156
FaeI	CATG	6 cut(s)	40, 470, 621, 683, 947, 1172
FaqI	GGGAC	2 cut(s)	376, 1080
FatI	CATG	6 cut(s)	36, 466, 617, 679, 943, 1168
FblI	GTMKAC	1 cut(s)	1127
Fnu4HI	GCNGC	5 cut(s)	175, 276, 285, 357, 1080
FokI	GGATG	1 cut(s)	662
Fsp4HI	GCNGC	5 cut(s)	175, 276, 285, 357, 1080
FspBI	CTAG	5 cut(s)	207, 255, 410, 777, 803
GluI	GCNGC	5 cut(s)	175, 276, 285, 357, 1080
GsaI	CCCAGC	1 cut(s)	1053
HaeIII	GGCC	4 cut(s)	582, 661, 942, 1037
HapII	CCGG	3 cut(s)	96, 152, 1190
Hin1II	CATG	6 cut(s)	40, 470, 621, 683, 947, 1172
HincII	GTYRAC	1 cut(s)	1128
HindII	GTYRAC	1 cut(s)	1128
HindIII	AAGCTT	1 cut(s)	789
HinfI	GANTC	6 cut(s)	235, 251, 457, 509, 670, 893
HpaII	CCGG	3 cut(s)	96, 152, 1190
HphI	GGTGA	5 cut(s)	95, 325, 583, 797, 1112
Hpy166II	GTNNAC	2 cut(s)	568, 1128
Hpy188I	TCNGA	5 cut(s)	27, 196, 547, 898, 1091
Hpy188III	TCNNGA	8 cut(s)	137, 348, 448, 461, 467, 521, 861, 1190
Hpy8I	GTNNAC	2 cut(s)	568, 1128
HpyAV	CCTTC	6 cut(s)	32, 241, 412, 921, 932, 1080
HpyCH4III	ACNGT	3 cut(s)	244, 657, 1125
HpyF10VI	GCNNNNNNNGC	8 cut(s)	212, 281, 284, 570, 579, 764, 773, 1181
HpyF3I	CTNAG	3 cut(s)	73, 289, 560
Hsp92II	CATG	6 cut(s)	40, 470, 621, 683, 947, 1172
Kpn2I	TCCGGA	1 cut(s)	1189
Kzo9I	GATC	3 cut(s)	373, 463, 1011
LguI	GCTCTTC	1 cut(s)	966
LmnI	GCTCC	2 cut(s)	419, 919
Lsp1109I	GCAGC	5 cut(s)	161, 287, 296, 343, 1066
LweI	GCATC	3 cut(s)	287, 789, 1163
MaeI	CTAG	5 cut(s)	207, 255, 410, 777, 803
MaeIII	GTNAC	2 cut(s)	454, 1056
MalI	GATC	3 cut(s)	375, 465, 1013
MboI	GATC	3 cut(s)	373, 463, 1011
MluCI	AATT	4 cut(s)	132, 197, 609, 986
MlyI	GAGTC	1 cut(s)	451
MmeI	TCCRAC	2 cut(s)	136, 860
MnlI	CCTC	8 cut(s)	82, 346, 429, 432, 773, 900, 910, 1038
Mph1103I	ATGCAT	1 cut(s)	1156
MroI	TCCGGA	1 cut(s)	1189
MroXI	GAANNNNTTC	2 cut(s)	401, 497
MseI	TTAA	2 cut(s)	390, 993
MslI	CAYNNNNRTG	2 cut(s)	182, 1019
MspA1I	CMGCKG	2 cut(s)	77, 599
MspCI	CTTAAG	1 cut(s)	992
MspI	CCGG	3 cut(s)	96, 152, 1190
MspR9I	CCNGG	2 cut(s)	143, 1136
Mva1269I	GAATGC	2 cut(s)	403, 1156
MvaI	CCWGG	2 cut(s)	143, 1136
MwoI	GCNNNNNNNGC	8 cut(s)	212, 281, 284, 570, 579, 764, 773, 1181
NdeII	GATC	3 cut(s)	373, 463, 1011
NlaIII	CATG	6 cut(s)	40, 470, 621, 683, 947, 1172
NlaIV	GGNNCC	4 cut(s)	94, 415, 999, 1068
NmuCI	GTSAC	1 cut(s)	454
NsiI	ATGCAT	1 cut(s)	1156
PagI	TCATGA	1 cut(s)	466
PaqCI	CACCTGC	1 cut(s)	1088
PceI	AGGCCT	1 cut(s)	582
PciSI	GCTCTTC	1 cut(s)	966
PctI	GAATGC	2 cut(s)	403, 1156
PdmI	GAANNNNTTC	2 cut(s)	401, 497
PfeI	GAWTC	5 cut(s)	235, 251, 509, 670, 893
PkrI	GCNGC	5 cut(s)	176, 277, 286, 358, 1081
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
PpuMI	RGGWCCY	1 cut(s)	1067
Psp5II	RGGWCCY	1 cut(s)	1067
Psp6I	CCWGG	2 cut(s)	141, 1134
PspFI	CCCAGC	1 cut(s)	1049
PspGI	CCWGG	2 cut(s)	141, 1134
PspN4I	GGNNCC	4 cut(s)	94, 415, 999, 1068
PspPI	GGNCC	1 cut(s)	1067
PspPPI	RGGWCCY	1 cut(s)	1067
PstI	CTGCAG	2 cut(s)	277, 361
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	3 cut(s)	20, 148, 569
RsaNI	GTAC	3 cut(s)	19, 147, 568
RseI	CAYNNNNRTG	2 cut(s)	182, 1019
SalI	GTCGAC	1 cut(s)	1126
SapI	GCTCTTC	1 cut(s)	966
SaqAI	TTAA	2 cut(s)	390, 993
SatI	GCNGC	5 cut(s)	175, 276, 285, 357, 1080
Sau3AI	GATC	3 cut(s)	373, 463, 1011
Sau96I	GGNCC	1 cut(s)	1067
SchI	GAGTC	1 cut(s)	451
ScrFI	CCNGG	2 cut(s)	143, 1136
SfaNI	GCATC	3 cut(s)	287, 789, 1163
SfcI	CTRYAG	2 cut(s)	273, 357
SinI	GGWCC	1 cut(s)	1067
SmiMI	CAYNNNNRTG	2 cut(s)	182, 1019
SmlI	CTYRAG	2 cut(s)	459, 992
SmoI	CTYRAG	2 cut(s)	459, 992
Sse9I	AATT	4 cut(s)	132, 197, 609, 986
SseBI	AGGCCT	1 cut(s)	582
SsiI	CCGC	1 cut(s)	599
SspMI	CTAG	5 cut(s)	207, 255, 410, 777, 803
StuI	AGGCCT	1 cut(s)	582
StyD4I	CCNGG	2 cut(s)	141, 1134
TaaI	ACNGT	3 cut(s)	244, 657, 1125
TaqI	TCGA	4 cut(s)	223, 437, 623, 1127
TasI	AATT	4 cut(s)	132, 197, 609, 986
TatI	WGTACW	1 cut(s)	567
TfiI	GAWTC	5 cut(s)	235, 251, 509, 670, 893
Tru1I	TTAA	2 cut(s)	390, 993
Tru9I	TTAA	2 cut(s)	390, 993
TscAI	CASTG	2 cut(s)	662, 1026
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	5 cut(s)	174, 275, 284, 356, 1079
Tsp45I	GTSAC	1 cut(s)	454
TspGWI	ACGGA	1 cut(s)	505
TspRI	CASTG	2 cut(s)	662, 1026
Vha464I	CTTAAG	1 cut(s)	992
VpaK11BI	GGWCC	1 cut(s)	1067
XapI	RAATTY	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	1127
XmnI	GAANNNNTTC	2 cut(s)	401, 497
XspI	CTAG	5 cut(s)	207, 255, 410, 777, 803
Zsp2I	ATGCAT	1 cut(s)	1156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.