FvH4_4g34810

NHL domain-containing protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
32374395 .. 32378334
3940 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34810.t2

Sequence Viewer

Length: 1458 bp
ATGGGTCTCAGAGTTTTGCTTCTGGGTCTTGTTCTTGTGGTTCTAATCGGAGCTGCCTCGTCGGCTCCGACTACTGTCACTTCCAAGATTTTAAATGGGTACTTCTCAAATTTGGCGTCTGTGTTTATGAAATGGCTGTGGTCACTGAAAGCAACAACCAAGACAGCGGTTTCGGGGCGTCCGATGGTGAAGTTTGAGAGTGGGTTTACGGTGGAGACGGTGTTTGATGGGAGCAAGCTTGGTATTGAGCCTCACACTGTTGAGGTCTTGCCTAATGGGGAGCTTTTGATTTTGGACTCTGCTAATAGTAACATTTATAGAATCTCGTCGTCTCTATCTCTATATAGCAGACCAAAGCTGGTTGCAGGGTCCCCCGAAGGCAATGTTGGACATATAGATGGAAAGCCCAGAGAGGCAAGAATGCACCACCCAAAGGGGCTTACAGTTGATGACAGGGGAAACATTTATATTGCAGACACAATAAATATGGCAATCAGGAAGATTAGTGATGCTGGGATTACAACAATTGCAGGAGGGAAACTGGGCCATGGGGGAAGCCATGTGGATGGACCAAGTGAAGATGCAAAATTTTCCAATGACTTTGACGTGGTTTACATTGGAAGCAGCTGTTCCTTACTCGTCATAGACAGAGGAAATCAAGCTATCAGGGAGATCCAACTCCATTTTGATGATTGTGCCTACCAATATGGAAGTGGTTTCCCCCTTGGGATTGCGATGCTTCTGGGGGCAGCCTTTTTTGGTTACATGTTAGCACTACTGCAACGAAGAGTGGGTACAATTGTCTCTTCCCAAAATGATGAAGTCCCAACCAAGCCAAGGATGCCATCAAGTCCATACCAGAAGCCTCTGAAATCAGTCATGCCACCACTGATTCCAACTGAGGATGAGCAGGAGAAGCAAGAAGAAGGTTTCCTTGGATCACTTGGAAAGCTTTTAGTCAATGCCTGGGCATGCGTTTTGGAAATTCTTGGGAAAAAGCATTCAAACTATCAAAACCAAAGCCCTCTGCAACAGCAGCACAAACATTCAAATACTTGGCCTGTGCAAGATAGTTATGTGATAGCGGATGAGGATGAGCCGCCTACAATTGAGACCCGAACCCCTACTCCACGTAAAACCTATGCGTTTATGGCCAAGGATGCTGAAACAATCCAACAGTTGCGACAAAGCCGAGTTTTCTACAATGGGTGGGGTGATCATCAACAACAGCAGCCAAAACAGCAGCAGCATTATCATCGCCATCAGTCATCCACTCCACATACTTTCTATGAGCAGAGCTGTGATCAAACCACTGAGATTGTGTTTGGGGCGGTCCAGGAGCAGGATGGGAAGGTTGAAGCAGTGGTCATTAAGCCTATTGATTATGGAGATCCCATGCTTGGTCATCGCAGTGTCAGCTACCGGTTCACTTCAATGGGTTATCCCCGTGGTTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

486

Amino Acids

53.6

Weight (kDa)

6.6

Isoelectric Point (pI)

48.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 167, 1085, 1100, 1331
AclWI GGATC 3 cut(s) 667, 946, 1385
AcoI YGGCCR 1 cut(s) 1152
AcsI RAATTY 3 cut(s) 109, 587, 984
AcyI GRCGYC 2 cut(s) 116, 178
AfaI GTAC 2 cut(s) 101, 796
AfiI CCNNNNNNNGG 4 cut(s) 433, 837, 1342, 1400
AflIII ACRYGT 1 cut(s) 765
AgeI ACCGGT 1 cut(s) 1422
AgsI TTSAA 4 cut(s) 1005, 1050, 1358, 1434
AjiI CACGTC 1 cut(s) 607
AjnI CCWGG 2 cut(s) 965, 1335
AjuI GAANNNNNNNTTGG 4 cut(s) 369, 401, 918, 950
AloI GAACNNNNNNTCC 2 cut(s) 1111, 1143
AluBI AGCT 9 cut(s) 53, 238, 283, 358, 627, 662, 952, 1299, 1419
AluI AGCT 9 cut(s) 53, 238, 283, 358, 627, 662, 952, 1299, 1419
Alw26I GTCTC 5 cut(s) 11, 209, 336, 808, 1106
AlwI GGATC 3 cut(s) 667, 946, 1385
AoxI GGCC 3 cut(s) 544, 1058, 1152
ApeKI GCWGC 7 cut(s) 53, 624, 749, 1036, 1231, 1243, 1246
ApoI RAATTY 3 cut(s) 109, 587, 984
ArsI GACNNNNNNTTYG 4 cut(s) 101, 133, 154, 186
AsiGI ACCGGT 1 cut(s) 1422
AspS9I GGNCC 4 cut(s) 369, 544, 569, 1333
AsuHPI GGTGA 2 cut(s) 199, 1226
AvaII GGWCC 3 cut(s) 369, 569, 1333
BaeI ACNNNNGTAYC 2 cut(s) 786, 819
BalI TGGCCA 1 cut(s) 1154
BarI GAAGNNNNNNTAC 2 cut(s) 778, 810
BbvI GCAGC 7 cut(s) 40, 636, 761, 1048, 1243, 1255, 1258
BccI CCATC 7 cut(s) 178, 221, 392, 560, 853, 1269, 1340
BcgI CGANNNNNNTGC 2 cut(s) 1238, 1272
BciT130I CCWGG 2 cut(s) 967, 1337
BclI TGATCA 2 cut(s) 1216, 1303
BcoDI GTCTC 5 cut(s) 11, 209, 336, 808, 1106
BglI GCCNNNNNGGC 1 cut(s) 62
BisI GCNGC 8 cut(s) 54, 625, 750, 1037, 1100, 1232, 1244, 1247
BlsI GCNGC 8 cut(s) 55, 626, 751, 1038, 1101, 1233, 1245, 1248
Bme1390I CCNGG 2 cut(s) 967, 1337
Bme18I GGWCC 3 cut(s) 369, 569, 1333
BmgBI CACGTC 1 cut(s) 607
BmgT120I GGNCC 4 cut(s) 369, 544, 569, 1333
BmiI GGNNCC 3 cut(s) 66, 370, 371
BmrFI CCNGG 2 cut(s) 967, 1337
BmrI ACTGGG 1 cut(s) 551
BmsI GCATC 5 cut(s) 499, 571, 726, 831, 1150
BmuI ACTGGG 1 cut(s) 551
BoxI GACNNNNGTC 1 cut(s) 74
BsaAI YACGTR 1 cut(s) 1133
BsaHI GRCGYC 2 cut(s) 116, 178
BsaI GGTCTC 2 cut(s) 11, 1106
BsaJI CCNNGG 7 cut(s) 547, 724, 836, 934, 966, 1155, 1447
BsaWI WCCGGW 1 cut(s) 1422
BsaXI ACNNNNNCTCC 4 cut(s) 206, 236, 1111, 1141
Bsc4I CCNNNNNNNGG 4 cut(s) 433, 837, 1342, 1400
Bse118I RCCGGY 1 cut(s) 1422
Bse1I ACTGG 1 cut(s) 546
Bse3DI GCAATG 1 cut(s) 388
BseBI CCWGG 2 cut(s) 967, 1337
BseDI CCNNGG 7 cut(s) 547, 724, 836, 934, 966, 1155, 1447
BseGI GGATG 8 cut(s) 571, 846, 910, 1093, 1099, 1165, 1268, 1351
BseLI CCNNNNNNNGG 4 cut(s) 433, 837, 1342, 1400
BseMI GCAATG 1 cut(s) 388
BseMII CTCAG 3 cut(s) 22, 891, 1305
BseNI ACTGG 1 cut(s) 546
BseXI GCAGC 7 cut(s) 40, 636, 761, 1048, 1243, 1255, 1258
BseYI CCCAGC 1 cut(s) 512
BshFI GGCC 3 cut(s) 546, 1060, 1154
BshTI ACCGGT 1 cut(s) 1422
BsiSI CCGG 1 cut(s) 1423
BslFI GGGAC 2 cut(s) 355, 809
BslI CCNNNNNNNGG 4 cut(s) 433, 837, 1342, 1400
BsmAI GTCTC 5 cut(s) 11, 209, 336, 808, 1106
BsmBI CGTCTC 2 cut(s) 209, 336
BsmFI GGGAC 2 cut(s) 355, 809
BsmI GAATGC 2 cut(s) 426, 1000
BsnI GGCC 3 cut(s) 546, 1060, 1154
Bso31I GGTCTC 2 cut(s) 11, 1106
Bsp143I GATC 5 cut(s) 672, 938, 1216, 1303, 1390
Bsp19I CCATGG 1 cut(s) 547
BspACI CCGC 4 cut(s) 167, 1085, 1100, 1331
BspANI GGCC 3 cut(s) 546, 1060, 1154
BspCNI CTCAG 3 cut(s) 21, 892, 1306
BspLI GGNNCC 3 cut(s) 66, 370, 371
BspPI GGATC 3 cut(s) 667, 946, 1385
BspTNI GGTCTC 2 cut(s) 11, 1106
BsrDI GCAATG 1 cut(s) 388
BsrFI RCCGGY 1 cut(s) 1422
BsrI ACTGG 1 cut(s) 546
BssAI RCCGGY 1 cut(s) 1422
BssECI CCNNGG 7 cut(s) 547, 724, 836, 934, 966, 1155, 1447
BssMI GATC 5 cut(s) 672, 938, 1216, 1303, 1390
BssNI GRCGYC 2 cut(s) 116, 178
BssT1I CCWWGG 5 cut(s) 547, 724, 836, 934, 1155
Bst2UI CCWGG 2 cut(s) 967, 1337
Bst4CI ACNGT 6 cut(s) 76, 211, 220, 259, 445, 1179
Bst6I CTCTTC 2 cut(s) 781, 811
BstACI GRCGYC 2 cut(s) 116, 178
BstBAI YACGTR 1 cut(s) 1133
BstC8I GCNNGC 2 cut(s) 236, 973
BstDEI CTNAG 3 cut(s) 8, 900, 1314
BstDSI CCRYGG 2 cut(s) 547, 1447
BstF5I GGATG 8 cut(s) 571, 846, 910, 1093, 1099, 1165, 1268, 1351
BstKTI GATC 5 cut(s) 675, 941, 1219, 1306, 1393
BstMAI GTCTC 5 cut(s) 11, 209, 336, 808, 1106
BstMBI GATC 5 cut(s) 672, 938, 1216, 1303, 1390
BstMWI GCNNNNNNNGC 8 cut(s) 62, 841, 916, 1036, 1151, 1160, 1240, 1416
BstNI CCWGG 2 cut(s) 967, 1337
BstNSI RCATGY 2 cut(s) 769, 975
BstPAI GACNNNNGTC 1 cut(s) 74
BstSCI CCNGG 2 cut(s) 965, 1335
BstV1I GCAGC 7 cut(s) 40, 636, 761, 1048, 1243, 1255, 1258
BstX2I RGATCY 2 cut(s) 672, 1390
BstXI CCANNNNNNTGG 1 cut(s) 566
BstYI RGATCY 2 cut(s) 672, 1390
BsuRI GGCC 3 cut(s) 546, 1060, 1154
BtgI CCRYGG 2 cut(s) 547, 1447
BtgZI GCGATG 3 cut(s) 749, 1241, 1391
BtrI CACGTC 1 cut(s) 607
BtsCI GGATG 8 cut(s) 571, 846, 910, 1093, 1099, 1165, 1268, 1351
BtsI GCAGTG 2 cut(s) 1368, 1417
BtsIMutI CAGTG 6 cut(s) 143, 255, 887, 1311, 1368, 1417
Cac8I GCNNGC 2 cut(s) 236, 973
Cfr10I RCCGGY 1 cut(s) 1422
Cfr13I GGNCC 4 cut(s) 369, 544, 569, 1333
CseI GACGC 2 cut(s) 105, 167
Csp6I GTAC 2 cut(s) 100, 795
CspAI ACCGGT 1 cut(s) 1422
CspCI CAANNNNNGTGG 2 cut(s) 1300, 1335
CviAII CATG 6 cut(s) 548, 560, 766, 880, 972, 1396
CviQI GTAC 2 cut(s) 100, 795
DdeI CTNAG 3 cut(s) 8, 900, 1314
DpnI GATC 5 cut(s) 674, 940, 1218, 1305, 1392
DpnII GATC 5 cut(s) 672, 938, 1216, 1303, 1390
DraI TTTAAA 1 cut(s) 93
EaeI YGGCCR 1 cut(s) 1152
Eam1104I CTCTTC 2 cut(s) 781, 811
EarI CTCTTC 2 cut(s) 781, 811
Eco130I CCWWGG 5 cut(s) 547, 724, 836, 934, 1155
Eco31I GGTCTC 2 cut(s) 11, 1106
Eco47I GGWCC 3 cut(s) 369, 569, 1333
EcoO109I RGGNCCY 1 cut(s) 369
EcoRII CCWGG 2 cut(s) 965, 1335
EcoT14I CCWWGG 5 cut(s) 547, 724, 836, 934, 1155
ErhI CCWWGG 5 cut(s) 547, 724, 836, 934, 1155
Esp3I CGTCTC 2 cut(s) 209, 336
FaeI CATG 6 cut(s) 551, 563, 769, 883, 975, 1399
FalI AAGNNNNNCTT 2 cut(s) 918, 950
FaqI GGGAC 2 cut(s) 355, 809
FatI CATG 6 cut(s) 547, 559, 765, 879, 971, 1395
FbaI TGATCA 2 cut(s) 1216, 1303
Fnu4HI GCNGC 8 cut(s) 54, 625, 750, 1037, 1100, 1232, 1244, 1247
FokI GGATG 8 cut(s) 578, 853, 917, 1100, 1106, 1172, 1255, 1358
Fsp4HI GCNGC 8 cut(s) 54, 625, 750, 1037, 1100, 1232, 1244, 1247
GluI GCNGC 8 cut(s) 54, 625, 750, 1037, 1100, 1232, 1244, 1247
GsaI CCCAGC 1 cut(s) 516
HaeIII GGCC 3 cut(s) 546, 1060, 1154
HapII CCGG 1 cut(s) 1423
HgaI GACGC 2 cut(s) 105, 167
Hin1I GRCGYC 2 cut(s) 116, 178
Hin1II CATG 6 cut(s) 551, 563, 769, 883, 975, 1399
HindIII AAGCTT 2 cut(s) 236, 950
HinfI GANTC 3 cut(s) 296, 321, 892
HpaII CCGG 1 cut(s) 1423
HphI GGTGA 2 cut(s) 199, 1226
Hpy166II GTNNAC 3 cut(s) 207, 613, 1428
Hpy188I TCNGA 5 cut(s) 11, 50, 69, 183, 870
Hpy188III TCNNGA 1 cut(s) 496
Hpy8I GTNNAC 3 cut(s) 207, 613, 1428
Hpy99I CGWCG 2 cut(s) 64, 331
HpyAV CCTTC 3 cut(s) 371, 920, 1345
HpyCH4III ACNGT 6 cut(s) 76, 211, 220, 259, 445, 1179
HpyCH4IV ACGT 2 cut(s) 606, 1132
HpyCH4V TGCA 8 cut(s) 365, 424, 473, 530, 584, 781, 1030, 1066
HpyF10VI GCNNNNNNNGC 8 cut(s) 62, 841, 916, 1036, 1151, 1160, 1240, 1416
HpyF3I CTNAG 3 cut(s) 8, 900, 1314
HpySE526I ACGT 2 cut(s) 606, 1132
Hsp92I GRCGYC 2 cut(s) 116, 178
Hsp92II CATG 6 cut(s) 551, 563, 769, 883, 975, 1399
KflI GGGWCCC 1 cut(s) 369
Ksp22I TGATCA 2 cut(s) 1216, 1303
Kzo9I GATC 5 cut(s) 672, 938, 1216, 1303, 1390
LmnI GCTCC 5 cut(s) 50, 70, 231, 280, 1339
Lsp1109I GCAGC 7 cut(s) 40, 636, 761, 1048, 1243, 1255, 1258
LweI GCATC 5 cut(s) 499, 571, 726, 831, 1150
MaeII ACGT 2 cut(s) 606, 1132
MaeIII GTNAC 4 cut(s) 76, 141, 308, 761
MalI GATC 5 cut(s) 674, 940, 1218, 1305, 1392
MboI GATC 5 cut(s) 672, 938, 1216, 1303, 1390
MboII GAAGA 5 cut(s) 511, 590, 798, 798, 935
MfeI CAATTG 3 cut(s) 525, 798, 1107
MflI RGATCY 2 cut(s) 672, 1390
MlsI TGGCCA 1 cut(s) 1154
MluCI AATT 6 cut(s) 109, 525, 587, 798, 984, 1107
MluNI TGGCCA 1 cut(s) 1154
MlyI GAGTC 1 cut(s) 290
MmeI TCCRAC 5 cut(s) 92, 367, 700, 920, 1198
Mox20I TGGCCA 1 cut(s) 1154
MscI TGGCCA 1 cut(s) 1154
MseI TTAA 2 cut(s) 92, 1371
MslI CAYNNNNRTG 5 cut(s) 396, 564, 687, 1410, 1433
Msp20I TGGCCA 1 cut(s) 1154
MspA1I CMGCKG 2 cut(s) 167, 627
MspI CCGG 1 cut(s) 1423
MspR9I CCNGG 2 cut(s) 967, 1337
MunI CAATTG 3 cut(s) 525, 798, 1107
Mva1269I GAATGC 2 cut(s) 426, 1000
MvaI CCWGG 2 cut(s) 967, 1337
MwoI GCNNNNNNNGC 8 cut(s) 62, 841, 916, 1036, 1151, 1160, 1240, 1416
NcoI CCATGG 1 cut(s) 547
NdeII GATC 5 cut(s) 672, 938, 1216, 1303, 1390
NlaIII CATG 6 cut(s) 551, 563, 769, 883, 975, 1399
NlaIV GGNNCC 3 cut(s) 66, 370, 371
NmeAIII GCCGAG 1 cut(s) 1217
NmuCI GTSAC 2 cut(s) 76, 141
NspI RCATGY 2 cut(s) 769, 975
PaeI GCATGC 1 cut(s) 975
PciI ACATGT 1 cut(s) 765
PcsI WCGNNNNNNNCGW 2 cut(s) 65, 179
PctI GAATGC 2 cut(s) 426, 1000
PfeI GAWTC 2 cut(s) 321, 892
PfoI TCCNGGA 1 cut(s) 1335
PinAI ACCGGT 1 cut(s) 1422
PkrI GCNGC 8 cut(s) 55, 626, 751, 1038, 1101, 1233, 1245, 1248
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
Ppu21I YACGTR 1 cut(s) 1133
PpuMI RGGWCCY 1 cut(s) 369
PscI ACATGT 1 cut(s) 765
PshAI GACNNNNGTC 1 cut(s) 74
Psp5II RGGWCCY 1 cut(s) 369
Psp6I CCWGG 2 cut(s) 965, 1335
PspFI CCCAGC 1 cut(s) 512
PspGI CCWGG 2 cut(s) 965, 1335
PspN4I GGNNCC 3 cut(s) 66, 370, 371
PspPI GGNCC 4 cut(s) 369, 544, 569, 1333
PspPPI RGGWCCY 1 cut(s) 369
PsuI RGATCY 2 cut(s) 672, 1390
PvuII CAGCTG 1 cut(s) 627
RsaI GTAC 2 cut(s) 101, 796
RsaNI GTAC 2 cut(s) 100, 795
RseI CAYNNNNRTG 5 cut(s) 396, 564, 687, 1410, 1433
SaqAI TTAA 2 cut(s) 92, 1371
SatI GCNGC 8 cut(s) 54, 625, 750, 1037, 1100, 1232, 1244, 1247
Sau3AI GATC 5 cut(s) 672, 938, 1216, 1303, 1390
Sau96I GGNCC 4 cut(s) 369, 544, 569, 1333
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 2 cut(s) 967, 1337
SfaNI GCATC 5 cut(s) 499, 571, 726, 831, 1150
SinI GGWCC 3 cut(s) 369, 569, 1333
SmiMI CAYNNNNRTG 5 cut(s) 396, 564, 687, 1410, 1433
SphI GCATGC 1 cut(s) 975
Sse9I AATT 6 cut(s) 109, 525, 587, 798, 984, 1107
SsiI CCGC 4 cut(s) 167, 1085, 1100, 1331
StyD4I CCNGG 2 cut(s) 965, 1335
StyI CCWWGG 5 cut(s) 547, 724, 836, 934, 1155
TaaI ACNGT 6 cut(s) 76, 211, 220, 259, 445, 1179
TaiI ACGT 2 cut(s) 609, 1135
TasI AATT 6 cut(s) 109, 525, 587, 798, 984, 1107
TauI GCSGC 1 cut(s) 1102
TfiI GAWTC 2 cut(s) 321, 892
Tru1I TTAA 2 cut(s) 92, 1371
Tru9I TTAA 2 cut(s) 92, 1371
TscAI CASTG 6 cut(s) 150, 262, 894, 1318, 1368, 1417
TseFI GTSAC 2 cut(s) 76, 141
TseI GCWGC 7 cut(s) 53, 624, 749, 1036, 1231, 1243, 1246
Tsp45I GTSAC 2 cut(s) 76, 141
TspDTI ATGAA 2 cut(s) 143, 834
TspRI CASTG 6 cut(s) 150, 262, 894, 1318, 1368, 1417
VpaK11BI GGWCC 3 cut(s) 369, 569, 1333
XapI RAATTY 3 cut(s) 109, 587, 984
XceI RCATGY 2 cut(s) 769, 975
XcmI CCANNNNNNNNNTGG 2 cut(s) 710, 1343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.