Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003391

Physical Location & Seq

Genomic Coordinates Reverse (-)

79780334 .. 79783240

Gene Structure 2907 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021991

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1593 bp

ATGTTGAGGAAATGGGTTTCTTTGGTTCTGATCTTTGTGATTCTCTCTGGGGACTTCTCATCAGCTTCAGCCACACCTCCTCCTGCAAAAATTGTAACTGGGATCGTCTCCAATGTGGTGTCTGCTCTTGTTAAATGGCTCTGGTCACTGAAATCCACCCCCAAAACCAGCACAGCGGTTTCTGGCCGTTCAATGGTGAAATTTGAGGGTGGATATACTGTAGATACGGTTTTCGATGGAAGTAAGCTTGGGATTGAACCACACTCCATTGAAGTATCCCCAAGTGGAGAGCTTCTGGTTTTGGATTCTGAAAATAGTAACATCTACAGGATTTCAACACCATTATCTAAATATAGCCGACCCAAGCTCATAGCTGGGTCACCTGAAGGCTACTCGGGGCATGTAGATGGGAGGACAAGAGAAGCAAGAATGAACCACCCCAAAGGAATGACTGTGGATGACAGAGGAAATATCTATATTGCAGACACAATGAATATGGCTATCAGGAAGATAAGTGATGCTGGTGTTACTACTATTGCTGGTGGAAAATGGGGCCGAGGAGGTGGTCATGTTGATGGTCCAAGTGAAGATGCAAAGTTTTCTAGTGATTTTGATGTGGTTTATATTGGAAGTAGCTGCTCTCTTTTGGTTATAGACAGAGGAAACCAGGCAATTCGGGAGATCCAACTCCACTATGATGACTGTGCTGACCACCATGATGGTAGTTTCCATTTAGGCGTAGCAGTGCTGCTTGTAGCTGCATTCTTTGGTTACATGCTGGCATTGTTGCAGCATCGAGTGCAAGCAATATTTTCATCAAAAGATGACCAAACAACTGCTGCTATAAAGAGAGCTGCATCAATGGCTCAATACCAGATGCCTCCTAAATCTGTTAGGCCCCCTTTAATTCCCACTGAATATGAACCCGAAAAACCAGATGATGGCTTCTTTGGTTCACTTGGGAAGATGTTTCTCAATACTGGCTCATCTGTGGGTGAAATCGTTGGGGGATTTTTTTCAGGTAGAAGAAAGTCCCTCCATTATCAGATTCAACAGCAGTATCATCAAACTCACAGAAGTTCAAATCCATGGCCTGTGCAAGACAGCTTTGTGATTCCAGATGATGAGCCTCCTCCACCATCCATAGAGACCAGAACCCCAACTCCAAAGAAAACCTACCCAGTCATGACTAAAGAACTGGAGATCCCCCGCCATTCTAAGCAAAGTCGAGCCTACTATAATTCATGGGATGGTGAATATAACCAGCAGCAACAACATCAGATGCAAATGCAAATGCAGATGCAGCAACAGCAACAGCAACAGCAACAACAACAGATGCATTTGCAGATGCAGCGCCAGCAGCAACAACAGCAGCAGCAGCAGCATCATCATAGGCATTACTCATCCAACCCAAAGACATACTATGAGAGGAGCAGTGAGACTAATGAGATTGTGTTTGGGGCGGTTCAAGAACAAGGTGGACGTCGTGAAGCTGTGGTGATAAAGGCTGTAGACTATTCTGACCCTACATATAATCACTATAACATTCGACCACGAGGCAATTATACTGATTATAGTTCCCCTGGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

531

Amino Acids

59.48

Weight (kDa)

7.81

Isoelectric Point (pI)

50.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70280 AT1G70280
fragaria_vesca	FvH4_4g34810 FvH4_4g34810 FvH4_6g50490 FvH4_6g50490
malus_domestica	MD09G1036000.v1.1 MD13G1089500.v1.1 MD16G1089700.v1.1 MD17G1037600.v1.1
prunus_persica	Prupe.1G256300_v2.0.a1 Prupe.3G281800_v2.0.a1 Prupe.3G281800_v2.0.a1
pyrus_communis	pycom111g02890 pycom13g07800 pycom16g07680 pycom17g03370
rosa_chinensis	RchiOBHm_Chr2g0170891 RchiOBHm_Chr4g0444151
rosa_laevigata	RLG00000021991
rosa_multiflora	Rmu_sc0009938.1_g000002 Rmu_sc0012638.1_g000012
rosa_roxburghii	Rroxscaffold_2G00080990 Rroxscaffold_5G00384740
rosa_rugosa	Rorug02G0552200 Rorug04G0350500
rosa_samantha	Rh2AG624900 Rh2BG635600 Rh2CG604300 Rh2DG647200 Rh4AG411100 Rh4BG422500 Rh4CG436900 Rh4DG417800
rosa_wichuraiana	Rw2G051760 Rw4G035320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1486
AccB7I	CCANNNNNTGG	1 cut(s)	941
AccI	GTMKAC	1 cut(s)	1512
AciI	CCGC	3 cut(s)	176, 1210, 1463
AclWI	GGATC	3 cut(s)	110, 676, 1198
AcoI	YGGCCR	1 cut(s)	184
AcsI	RAATTY	1 cut(s)	200
AcuI	CTGAAG	2 cut(s)	51, 405
AcyI	GRCGYC	1 cut(s)	1483
AfiI	CCNNNNNNNGG	2 cut(s)	193, 941
AgsI	TTSAA	7 cut(s)	192, 257, 272, 336, 1052, 1083, 1469
AjnI	CCWGG	2 cut(s)	666, 1582
AloI	GAACNNNNNNTCC	4 cut(s)	1147, 1179, 1188, 1220
Alw26I	GTCTC	3 cut(s)	112, 1142, 1433
AlwI	GGATC	3 cut(s)	110, 676, 1198
Ama87I	CYCGRG	1 cut(s)	394
AoxI	GGCC	4 cut(s)	184, 553, 896, 1091
ApoI	RAATTY	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	1356
AspS9I	GGNCC	3 cut(s)	553, 578, 897
AsuHPI	GGTGA	5 cut(s)	208, 372, 1007, 1265, 1510
AvaI	CYCGRG	1 cut(s)	394
AvaII	GGWCC	1 cut(s)	578
BaeI	ACNNNNGTAYC	2 cut(s)	1043, 1076
BauI	CACGAG	1 cut(s)	1554
BccI	CCATC	7 cut(s)	230, 401, 569, 713, 935, 1147, 1244
BceAI	ACGGC	1 cut(s)	171
BciT130I	CCWGG	2 cut(s)	668, 1584
BciVI	GTATCC	1 cut(s)	286
BcoDI	GTCTC	3 cut(s)	112, 1142, 1433
BfaI	CTAG	1 cut(s)	603
BfmI	CTRYAG	3 cut(s)	219, 325, 1509
BfoI	RGCGCY	1 cut(s)	1357
BfuI	GTATCC	1 cut(s)	286
Bme1390I	CCNGG	2 cut(s)	668, 1584
Bme18I	GGWCC	1 cut(s)	578
BmeT110I	CYCGRG	1 cut(s)	394
BmgT120I	GGNCC	3 cut(s)	553, 578, 897
BmiI	GGNNCC	2 cut(s)	554, 899
BmrFI	CCNGG	2 cut(s)	668, 1584
BmrI	ACTGGG	2 cut(s)	108, 1175
BmuI	ACTGGG	2 cut(s)	108, 1175
BpmI	CTGGAG	1 cut(s)	1220
BsaHI	GRCGYC	1 cut(s)	1483
BsaI	GGTCTC	1 cut(s)	1142
BsaJI	CCNNGG	3 cut(s)	556, 1088, 1582
BsaXI	ACNNNNNCTCC	4 cut(s)	64, 94, 1147, 1177
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 941
Bse1I	ACTGG	4 cut(s)	103, 985, 1181, 1203
BseBI	CCWGG	2 cut(s)	668, 1584
BseDI	CCNNGG	3 cut(s)	556, 1088, 1582
BseGI	GGATG	4 cut(s)	463, 1139, 1255, 1403
BseLI	CCNNNNNNNGG	2 cut(s)	193, 941
BseNI	ACTGG	4 cut(s)	103, 985, 1181, 1203
BseRI	GAGGAG	4 cut(s)	69, 573, 1122, 1444
BseYI	CCCAGC	1 cut(s)	374
BshFI	GGCC	4 cut(s)	186, 555, 898, 1093
BsiHKCI	CYCGRG	1 cut(s)	394
BslFI	GGGAC	2 cut(s)	65, 1018
BslI	CCNNNNNNNGG	2 cut(s)	193, 941
BsmAI	GTCTC	3 cut(s)	112, 1142, 1433
BsmBI	CGTCTC	1 cut(s)	112
BsmFI	GGGAC	2 cut(s)	65, 1018
BsmI	GAATGC	1 cut(s)	761
BsnI	GGCC	4 cut(s)	186, 555, 898, 1093
Bso31I	GGTCTC	1 cut(s)	1142
BsoBI	CYCGRG	1 cut(s)	394
Bsp143I	GATC	4 cut(s)	30, 102, 681, 1203
Bsp19I	CCATGG	1 cut(s)	1088
BspACI	CCGC	3 cut(s)	176, 1210, 1463
BspANI	GGCC	4 cut(s)	186, 555, 898, 1093
BspHI	TCATGA	1 cut(s)	1185
BspLI	GGNNCC	2 cut(s)	554, 899
BspPI	GGATC	3 cut(s)	110, 676, 1198
BspTNI	GGTCTC	1 cut(s)	1142
BsrI	ACTGG	4 cut(s)	103, 985, 1181, 1203
BssECI	CCNNGG	3 cut(s)	556, 1088, 1582
BssMI	GATC	4 cut(s)	30, 102, 681, 1203
BssNI	GRCGYC	1 cut(s)	1483
BssSI	CACGAG	1 cut(s)	1554
BssT1I	CCWWGG	1 cut(s)	1088
Bst2BI	CACGAG	1 cut(s)	1554
Bst2UI	CCWGG	2 cut(s)	668, 1584
Bst4CI	ACNGT	4 cut(s)	220, 229, 454, 704
BstACI	GRCGYC	1 cut(s)	1483
BstAPI	GCANNNNNTGC	1 cut(s)	799
BstC8I	GCNNGC	3 cut(s)	780, 804, 1358
BstDEI	CTNAG	1 cut(s)	1218
BstDSI	CCRYGG	1 cut(s)	1088
BstEII	GGTNACC	1 cut(s)	378
BstF5I	GGATG	4 cut(s)	463, 1139, 1255, 1403
BstH2I	RGCGCY	1 cut(s)	1357
BstHHI	GCGC	1 cut(s)	1356
BstKTI	GATC	4 cut(s)	33, 105, 684, 1206
BstMAI	GTCTC	3 cut(s)	112, 1142, 1433
BstMBI	GATC	4 cut(s)	30, 102, 681, 1203
BstNI	CCWGG	2 cut(s)	668, 1584
BstNSI	RCATGY	2 cut(s)	404, 778
BstPI	GGTNACC	1 cut(s)	378
BstSCI	CCNGG	2 cut(s)	666, 1582
BstSFI	CTRYAG	3 cut(s)	219, 325, 1509
BstX2I	RGATCY	2 cut(s)	681, 1203
BstXI	CCANNNNNNTGG	1 cut(s)	719
BstYI	RGATCY	2 cut(s)	681, 1203
BsuI	GTATCC	1 cut(s)	286
BsuRI	GGCC	4 cut(s)	186, 555, 898, 1093
BtgI	CCRYGG	1 cut(s)	1088
BtsCI	GGATG	4 cut(s)	463, 1139, 1255, 1403
BtsI	GCAGTG	2 cut(s)	750, 1441
BtsIMutI	CAGTG	4 cut(s)	146, 750, 912, 1441
Cac8I	GCNNGC	3 cut(s)	780, 804, 1358
CciI	TCATGA	1 cut(s)	1185
CfoI	GCGC	1 cut(s)	1356
Cfr13I	GGNCC	3 cut(s)	553, 578, 897
CviAII	CATG	7 cut(s)	401, 569, 716, 775, 1089, 1186, 1245
DdeI	CTNAG	1 cut(s)	1218
DpnI	GATC	4 cut(s)	32, 104, 683, 1205
DpnII	GATC	4 cut(s)	30, 102, 681, 1203
EaeI	YGGCCR	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	1088
Eco31I	GGTCTC	1 cut(s)	1142
Eco47I	GGWCC	1 cut(s)	578
Eco57I	CTGAAG	2 cut(s)	51, 405
Eco88I	CYCGRG	1 cut(s)	394
Eco91I	GGTNACC	1 cut(s)	378
EcoO109I	RGGNCCY	1 cut(s)	897
EcoO65I	GGTNACC	1 cut(s)	378
EcoRII	CCWGG	2 cut(s)	666, 1582
EcoT14I	CCWWGG	1 cut(s)	1088
EcoT22I	ATGCAT	1 cut(s)	1341
ErhI	CCWWGG	1 cut(s)	1088
Esp3I	CGTCTC	1 cut(s)	112
FaeI	CATG	7 cut(s)	404, 572, 719, 778, 1092, 1189, 1248
FaqI	GGGAC	2 cut(s)	65, 1018
FatI	CATG	7 cut(s)	400, 568, 715, 774, 1088, 1185, 1244
FauI	CCCGC	1 cut(s)	1217
FblI	GTMKAC	1 cut(s)	1512
FokI	GGATG	4 cut(s)	470, 1126, 1262, 1390
FspBI	CTAG	1 cut(s)	603
GlaI	GCGC	1 cut(s)	1355
GsaI	CCCAGC	1 cut(s)	378
GsuI	CTGGAG	1 cut(s)	1220
HaeII	RGCGCY	1 cut(s)	1357
HaeIII	GGCC	4 cut(s)	186, 555, 898, 1093
HhaI	GCGC	1 cut(s)	1356
Hin1I	GRCGYC	1 cut(s)	1483
Hin1II	CATG	7 cut(s)	404, 572, 719, 778, 1092, 1189, 1248
Hin6I	GCGC	1 cut(s)	1354
HinP1I	GCGC	1 cut(s)	1354
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	4 cut(s)	40, 305, 1048, 1114
HphI	GGTGA	5 cut(s)	208, 372, 1007, 1265, 1510
Hpy166II	GTNNAC	3 cut(s)	956, 1481, 1513
Hpy188I	TCNGA	5 cut(s)	30, 310, 1047, 1281, 1522
Hpy188III	TCNNGA	6 cut(s)	505, 677, 1118, 1186, 1469, 1487
Hpy8I	GTNNAC	3 cut(s)	956, 1481, 1513
Hpy99I	CGWCG	1 cut(s)	1488
HpyAV	CCTTC	1 cut(s)	380
HpyCH4III	ACNGT	4 cut(s)	220, 229, 454, 704
HpyCH4IV	ACGT	1 cut(s)	1483
HpyF3I	CTNAG	1 cut(s)	1218
HpySE526I	ACGT	1 cut(s)	1483
Hsp92I	GRCGYC	1 cut(s)	1483
Hsp92II	CATG	7 cut(s)	404, 572, 719, 778, 1092, 1189, 1248
HspAI	GCGC	1 cut(s)	1354
Kzo9I	GATC	4 cut(s)	30, 102, 681, 1203
LmnI	GCTCC	1 cut(s)	1431
MaeI	CTAG	1 cut(s)	603
MaeII	ACGT	1 cut(s)	1483
MaeIII	GTNAC	6 cut(s)	94, 144, 317, 378, 526, 770
MalI	GATC	4 cut(s)	32, 104, 683, 1205
MboI	GATC	4 cut(s)	30, 102, 681, 1203
MboII	GAAGA	4 cut(s)	520, 599, 976, 1038
MflI	RGATCY	2 cut(s)	681, 1203
MluCI	AATT	6 cut(s)	90, 200, 672, 906, 1240, 1561
MmeI	TCCRAC	2 cut(s)	709, 1431
Mph1103I	ATGCAT	1 cut(s)	1341
MseI	TTAA	2 cut(s)	132, 905
MslI	CAYNNNNRTG	4 cut(s)	405, 573, 696, 717
MspA1I	CMGCKG	1 cut(s)	176
MspR9I	CCNGG	2 cut(s)	668, 1584
Mva1269I	GAATGC	1 cut(s)	761
MvaI	CCWGG	2 cut(s)	668, 1584
NcoI	CCATGG	1 cut(s)	1088
NdeII	GATC	4 cut(s)	30, 102, 681, 1203
NlaIII	CATG	7 cut(s)	404, 572, 719, 778, 1092, 1189, 1248
NlaIV	GGNNCC	2 cut(s)	554, 899
NmeAIII	GCCGAG	1 cut(s)	581
NmuCI	GTSAC	2 cut(s)	144, 378
NsiI	ATGCAT	1 cut(s)	1341
NspI	RCATGY	2 cut(s)	404, 778
PagI	TCATGA	1 cut(s)	1185
PctI	GAATGC	1 cut(s)	761
PfeI	GAWTC	4 cut(s)	40, 305, 1048, 1114
PflMI	CCANNNNNTGG	1 cut(s)	941
Psp6I	CCWGG	2 cut(s)	666, 1582
PspEI	GGTNACC	1 cut(s)	378
PspFI	CCCAGC	1 cut(s)	374
PspGI	CCWGG	2 cut(s)	666, 1582
PspN4I	GGNNCC	2 cut(s)	554, 899
PspPI	GGNCC	3 cut(s)	553, 578, 897
PsuI	RGATCY	2 cut(s)	681, 1203
RseI	CAYNNNNRTG	4 cut(s)	405, 573, 696, 717
SaqAI	TTAA	2 cut(s)	132, 905
Sau3AI	GATC	4 cut(s)	30, 102, 681, 1203
Sau96I	GGNCC	3 cut(s)	553, 578, 897
ScrFI	CCNGG	2 cut(s)	668, 1584
SfcI	CTRYAG	3 cut(s)	219, 325, 1509
SinI	GGWCC	1 cut(s)	578
SmiMI	CAYNNNNRTG	4 cut(s)	405, 573, 696, 717
Sse9I	AATT	6 cut(s)	90, 200, 672, 906, 1240, 1561
SsiI	CCGC	3 cut(s)	176, 1210, 1463
SspI	AATATT	1 cut(s)	810
SspMI	CTAG	1 cut(s)	603
StyD4I	CCNGG	2 cut(s)	666, 1582
StyI	CCWWGG	1 cut(s)	1088
TaaI	ACNGT	4 cut(s)	220, 229, 454, 704
TaiI	ACGT	1 cut(s)	1486
TaqI	TCGA	4 cut(s)	234, 796, 1228, 1549
TasI	AATT	6 cut(s)	90, 200, 672, 906, 1240, 1561
TfiI	GAWTC	4 cut(s)	40, 305, 1048, 1114
Tru1I	TTAA	2 cut(s)	132, 905
Tru9I	TTAA	2 cut(s)	132, 905
TscAI	CASTG	4 cut(s)	153, 750, 919, 1441
TseFI	GTSAC	2 cut(s)	144, 378
Tsp45I	GTSAC	2 cut(s)	144, 378
TspDTI	ATGAA	5 cut(s)	446, 506, 804, 936, 1233
TspRI	CASTG	4 cut(s)	153, 750, 919, 1441
Van91I	CCANNNNNTGG	1 cut(s)	941
VpaK11BI	GGWCC	1 cut(s)	578
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	2 cut(s)	404, 778
XmiI	GTMKAC	1 cut(s)	1512
XspI	CTAG	1 cut(s)	603
ZraI	GACGTC	1 cut(s)	1484
Zsp2I	ATGCAT	1 cut(s)	1341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.