Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003391

Physical Location & Seq

Genomic Coordinates Forward (+)

26659953 .. 26663649

Gene Structure 3697 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G256300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGTTTCAGTTCTGTGCTGTTCCGGGCTTCATTGTGAGAAAAGGAGTAATGGGTCGGAATGTCTTGGTGTTTGGTCTCGCCATTTTGTTTCTTTTTGGAGGAGTCTCATCAGCTGCTCCTACTGCTCCAGCAAAGATTGTCAGTGGGGTTTTTTCAAATGCTGCTTCTGCTTTCATGAAATGGCTGTGGTCACTGAGAGCAACATCCAAAACAGCGATTTCTGGCCGTCCGTTGATGAAGTATGAGAGTGGGTTTAATGTGGAGACAGTGTTTGATGGAAGCAAGCTTGGGATTGAGCCTTACTCTGTTGAGGTGTTGCCCAGTGGGGAGCTTCTGATTTTGGATTCTGCTAATAGTAACCTTTATAAGATCTCTTCCGCTCTGTCTCTCTACAGCAGACCAAAGCTGGTTACAGGATCCCCTGAAGGATACTCTGGACATGTAGATGGGAGGACCAGAGAGGCAAGATTGAACCACCCGAAGGGGCTTACAGTTGATGACAGTGGAAACATTTATATTGCAGACACAATGAATATGGCAATCAGGAAGATAAGTGATGCTGGGGTTACAACAATTGCTGGAGGGAAACAGGGAAGTGGGGGAAGCCATGTGGATGGACCAAGTGAGGATGCAAAGTTTTCTGATGACTTTGATGTTGTTTACATTGGAAGCAGCTGCTCCTTACTCGTCATAGACAGAGGAAATCAAGCAATCAGGGAGATCCAACTCCATTTTGATGACTGTGCTTATCAGTATGGAAGTGGTTTCCCCCTTGGGATTGCAATGCTTGTGGGCGCTGGCTTCTTTGGTTACATGCTAGCATTGCTACAACGCAGAGTTGGTACAATTGTCTCTTCCCAAAATGACCAAGGCCCAATGAAGACGAGCATTCCTCCAAGTCCATACCAGAAGCCTCTGAAATCAGTCAGGCCACCTTTGATTCCAACTGAAGATGAGCAGGAGAAGCAAGAAGAAGGCTTCTTTGGATCGATTGGGAAGCTTTTGGTCAATGCTGGGGCATGTGGTGCTGAAATTCTGGGAGCAATATTTCCTGGTTTCAGAAAAAAGCATCTAAACTATCAAGACCAAATTCAGCAGCAGCAGCAGAAGCATTCAAATTCTTGGCCTGTGCAAGATAGTTATGTGATACCAGATGAGGATGAGCCCCCTTCTATTGAAACCCGAACCCCCACCCCACGCAAAACCTACGCATTCATGGCCAAGGATGCTGAAACGATGCATCAGTTGCGGCAAAGCCGAGTTTTCTATAATGGGTGGGATGATATTCAGCAGCAGCAACAGCAGCAAAAACAACAACAGCATTATCATCGTTACCAATCATCAAACCCCAATACTTTCTATGAGCAGAGTTGTGAAAAAACCACTGAGATTGTGTTTGGTGAAGTTCAGGAGCAGGATGGGAAGGGTGAAGCTGTGGTCATAAAGCCTATTGATTATGGGAATCCCATGTTTAATCATTACAGTTTTACCTCCCAAATCAATCCTAGGGGTTATAACTATGGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

510

Amino Acids

56.16

Weight (kDa)

6.23

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70280 AT1G70280
fragaria_vesca	FvH4_4g34810 FvH4_4g34810 FvH4_6g50490 FvH4_6g50490
malus_domestica	MD09G1036000.v1.1 MD13G1089500.v1.1 MD16G1089700.v1.1 MD17G1037600.v1.1
prunus_persica	Prupe.1G256300_v2.0.a1 Prupe.3G281800_v2.0.a1 Prupe.3G281800_v2.0.a1
pyrus_communis	pycom111g02890 pycom13g07800 pycom16g07680 pycom17g03370
rosa_chinensis	RchiOBHm_Chr2g0170891 RchiOBHm_Chr4g0444151
rosa_laevigata	RLG00000021991
rosa_multiflora	Rmu_sc0009938.1_g000002 Rmu_sc0012638.1_g000012
rosa_roxburghii	Rroxscaffold_2G00080990 Rroxscaffold_5G00384740
rosa_rugosa	Rorug02G0552200 Rorug04G0350500
rosa_samantha	Rh2AG624900 Rh2BG635600 Rh2CG604300 Rh2DG647200 Rh4AG411100 Rh4BG422500 Rh4CG436900 Rh4DG417800
rosa_wichuraiana	Rw2G051760 Rw4G035320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	366, 1515
AccBSI	CCGCTC	1 cut(s)	380
AciI	CCGC	2 cut(s)	378, 1249
AclWI	GGATC	4 cut(s)	411, 424, 715, 994
AcoI	YGGCCR	2 cut(s)	223, 1218
AcsI	RAATTY	3 cut(s)	1032, 1089, 1117
AcuI	CTGAAG	2 cut(s)	444, 969
AfaI	GTAC	1 cut(s)	844
AfiI	CCNNNNNNNGG	1 cut(s)	481
AflIII	ACRYGT	1 cut(s)	439
AgsI	TTSAA	4 cut(s)	156, 472, 1116, 1178
AjnI	CCWGG	1 cut(s)	1051
AjuI	GAANNNNNNNTTGG	2 cut(s)	966, 998
AluBI	AGCT	7 cut(s)	113, 286, 331, 406, 675, 1000, 1433
AluI	AGCT	7 cut(s)	113, 286, 331, 406, 675, 1000, 1433
Alw26I	GTCTC	5 cut(s)	80, 109, 257, 390, 856
AlwI	GGATC	4 cut(s)	411, 424, 715, 994
AoxI	GGCC	5 cut(s)	223, 871, 929, 1124, 1218
ApoI	RAATTY	3 cut(s)	1032, 1089, 1117
AspA2I	CCTAGG	1 cut(s)	1505
AspLEI	GCGC	1 cut(s)	797
AspS9I	GGNCC	3 cut(s)	453, 617, 872
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	2 cut(s)	1412, 1439
AsuNHI	GCTAGC	1 cut(s)	817
AvaII	GGWCC	2 cut(s)	453, 617
AvrII	CCTAGG	1 cut(s)	1505
BaeI	ACNNNNGTAYC	2 cut(s)	834, 867
BalI	TGGCCA	1 cut(s)	1220
BamHI	GGATCC	1 cut(s)	416
BanII	GRGCYC	1 cut(s)	1167
BbsI	GAAGAC	1 cut(s)	887
BccI	CCATC	4 cut(s)	269, 440, 608, 1412
BceAI	ACGGC	1 cut(s)	210
BcgI	CGANNNNNNTGC	2 cut(s)	1310, 1344
BciT130I	CCWGG	1 cut(s)	1053
BciVI	GTATCC	1 cut(s)	422
BcnI	CCSGG	1 cut(s)	24
BcoDI	GTCTC	5 cut(s)	80, 109, 257, 390, 856
BfaI	CTAG	2 cut(s)	818, 1506
BfmI	CTRYAG	1 cut(s)	391
BfoI	RGCGCY	1 cut(s)	798
BfuI	GTATCC	1 cut(s)	422
BglII	AGATCT	1 cut(s)	369
BlnI	CCTAGG	1 cut(s)	1505
Bme1390I	CCNGG	2 cut(s)	24, 1053
Bme18I	GGWCC	2 cut(s)	453, 617
BmgT120I	GGNCC	3 cut(s)	453, 617, 872
BmiI	GGNNCC	1 cut(s)	418
BmrFI	CCNGG	2 cut(s)	24, 1053
BmrI	ACTGGG	1 cut(s)	315
BmsI	GCATC	6 cut(s)	547, 619, 1078, 1216, 1227, 1249
BmtI	GCTAGC	1 cut(s)	821
BmuI	ACTGGG	1 cut(s)	315
BpiI	GAAGAC	1 cut(s)	887
BplI	GAGNNNNNCTC	4 cut(s)	287, 319, 877, 909
BpmI	CTGGAG	2 cut(s)	111, 600
BpuMI	CCSGG	1 cut(s)	24
Bsa29I	ATCGAT	1 cut(s)	989
BsaI	GGTCTC	1 cut(s)	80
BsaJI	CCNNGG	4 cut(s)	772, 868, 1221, 1505
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
Bse1I	ACTGG	1 cut(s)	321
Bse3DI	GCAATG	2 cut(s)	789, 821
BseBI	CCWGG	1 cut(s)	1053
BseCI	ATCGAT	1 cut(s)	989
BseDI	CCNNGG	4 cut(s)	772, 868, 1221, 1505
BseGI	GGATG	7 cut(s)	203, 619, 634, 1165, 1231, 1285, 1423
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseMI	GCAATG	2 cut(s)	789, 821
BseMII	CTCAG	2 cut(s)	185, 1377
BseNI	ACTGG	1 cut(s)	321
BseRI	GAGGAG	1 cut(s)	114
BseYI	CCCAGC	2 cut(s)	560, 1013
BshFI	GGCC	5 cut(s)	225, 873, 931, 1126, 1220
BshVI	ATCGAT	1 cut(s)	989
BsiSI	CCGG	1 cut(s)	23
BslI	CCNNNNNNNGG	1 cut(s)	481
BsmAI	GTCTC	5 cut(s)	80, 109, 257, 390, 856
BsmI	GAATGC	3 cut(s)	888, 1111, 1211
BsnI	GGCC	5 cut(s)	225, 873, 931, 1126, 1220
Bso31I	GGTCTC	1 cut(s)	80
Bsp1286I	GDGCHC	1 cut(s)	1167
Bsp143I	GATC	4 cut(s)	369, 416, 720, 986
BspACI	CCGC	2 cut(s)	378, 1249
BspANI	GGCC	5 cut(s)	225, 873, 931, 1126, 1220
BspCNI	CTCAG	2 cut(s)	186, 1378
BspDI	ATCGAT	1 cut(s)	989
BspHI	TCATGA	1 cut(s)	174
BspLI	GGNNCC	1 cut(s)	418
BspOI	GCTAGC	1 cut(s)	821
BspPI	GGATC	4 cut(s)	411, 424, 715, 994
BspTNI	GGTCTC	1 cut(s)	80
BsrBI	CCGCTC	1 cut(s)	380
BsrDI	GCAATG	2 cut(s)	789, 821
BsrI	ACTGG	1 cut(s)	321
BssECI	CCNNGG	4 cut(s)	772, 868, 1221, 1505
BssMI	GATC	4 cut(s)	369, 416, 720, 986
BssT1I	CCWWGG	4 cut(s)	772, 868, 1221, 1505
Bst2UI	CCWGG	1 cut(s)	1053
Bst4CI	ACNGT	5 cut(s)	268, 493, 503, 743, 1484
Bst6I	CTCTTC	2 cut(s)	379, 859
BstAPI	GCANNNNNTGC	2 cut(s)	1025, 1246
BstC8I	GCNNGC	3 cut(s)	284, 799, 819
BstDEI	CTNAG	2 cut(s)	194, 1386
BstF5I	GGATG	7 cut(s)	203, 619, 634, 1165, 1231, 1285, 1423
BstH2I	RGCGCY	1 cut(s)	798
BstHHI	GCGC	1 cut(s)	797
BstKTI	GATC	4 cut(s)	372, 419, 723, 989
BstMAI	GTCTC	5 cut(s)	80, 109, 257, 390, 856
BstMBI	GATC	4 cut(s)	369, 416, 720, 986
BstNI	CCWGG	1 cut(s)	1053
BstNSI	RCATGY	3 cut(s)	443, 817, 1023
BstSCI	CCNGG	2 cut(s)	22, 1051
BstSFI	CTRYAG	1 cut(s)	391
BstV2I	GAAGAC	1 cut(s)	887
BstX2I	RGATCY	3 cut(s)	369, 416, 720
BstXI	CCANNNNNNTGG	1 cut(s)	614
BstYI	RGATCY	3 cut(s)	369, 416, 720
Bsu15I	ATCGAT	1 cut(s)	989
BsuI	GTATCC	1 cut(s)	422
BsuRI	GGCC	5 cut(s)	225, 873, 931, 1126, 1220
BsuTUI	ATCGAT	1 cut(s)	989
BtsCI	GGATG	7 cut(s)	203, 619, 634, 1165, 1231, 1285, 1423
BtsIMutI	CAGTG	6 cut(s)	148, 191, 273, 328, 508, 1383
Cac8I	GCNNGC	3 cut(s)	284, 799, 819
CciI	TCATGA	1 cut(s)	174
CfoI	GCGC	1 cut(s)	797
Cfr13I	GGNCC	3 cut(s)	453, 617, 872
ClaI	ATCGAT	1 cut(s)	989
Csp6I	GTAC	1 cut(s)	843
CspCI	CAANNNNNGTGG	4 cut(s)	771, 806, 1372, 1407
CviAII	CATG	7 cut(s)	175, 440, 608, 814, 1020, 1216, 1468
CviQI	GTAC	1 cut(s)	843
DdeI	CTNAG	2 cut(s)	194, 1386
DpnI	GATC	4 cut(s)	371, 418, 722, 988
DpnII	GATC	4 cut(s)	369, 416, 720, 986
EaeI	YGGCCR	2 cut(s)	223, 1218
Eam1104I	CTCTTC	2 cut(s)	379, 859
EarI	CTCTTC	2 cut(s)	379, 859
Eco130I	CCWWGG	4 cut(s)	772, 868, 1221, 1505
Eco24I	GRGCYC	1 cut(s)	1167
Eco31I	GGTCTC	1 cut(s)	80
Eco47I	GGWCC	2 cut(s)	453, 617
Eco57I	CTGAAG	2 cut(s)	444, 969
EcoRII	CCWGG	1 cut(s)	1051
EcoT14I	CCWWGG	4 cut(s)	772, 868, 1221, 1505
EcoT22I	ATGCAT	1 cut(s)	1242
EcoT38I	GRGCYC	1 cut(s)	1167
ErhI	CCWWGG	4 cut(s)	772, 868, 1221, 1505
FaeI	CATG	7 cut(s)	178, 443, 611, 817, 1023, 1219, 1471
FatI	CATG	7 cut(s)	174, 439, 607, 813, 1019, 1215, 1467
FokI	GGATG	7 cut(s)	190, 626, 641, 1172, 1238, 1292, 1430
FriOI	GRGCYC	1 cut(s)	1167
FspBI	CTAG	2 cut(s)	818, 1506
GlaI	GCGC	1 cut(s)	796
GsaI	CCCAGC	2 cut(s)	564, 1017
GsuI	CTGGAG	2 cut(s)	111, 600
HaeII	RGCGCY	1 cut(s)	798
HaeIII	GGCC	5 cut(s)	225, 873, 931, 1126, 1220
HapII	CCGG	1 cut(s)	23
HhaI	GCGC	1 cut(s)	797
Hin1II	CATG	7 cut(s)	178, 443, 611, 817, 1023, 1219, 1471
Hin6I	GCGC	1 cut(s)	795
HinP1I	GCGC	1 cut(s)	795
HindIII	AAGCTT	2 cut(s)	284, 998
HinfI	GANTC	4 cut(s)	102, 344, 940, 1462
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	2 cut(s)	1412, 1439
Hpy166II	GTNNAC	1 cut(s)	661
Hpy188I	TCNGA	5 cut(s)	57, 336, 643, 918, 1061
Hpy188III	TCNNGA	5 cut(s)	175, 435, 544, 1082, 1409
Hpy8I	GTNNAC	1 cut(s)	661
HpyAV	CCTTC	5 cut(s)	419, 475, 968, 1179, 1417
HpyCH4III	ACNGT	5 cut(s)	268, 493, 503, 743, 1484
HpyCH4V	TGCA	5 cut(s)	521, 632, 782, 1132, 1240
HpyF3I	CTNAG	2 cut(s)	194, 1386
Hsp92II	CATG	7 cut(s)	178, 443, 611, 817, 1023, 1219, 1471
HspAI	GCGC	1 cut(s)	795
Kzo9I	GATC	4 cut(s)	369, 416, 720, 986
LmnI	GCTCC	6 cut(s)	121, 130, 328, 683, 1040, 1411
LweI	GCATC	6 cut(s)	547, 619, 1078, 1216, 1227, 1249
MaeI	CTAG	2 cut(s)	818, 1506
MaeIII	GTNAC	6 cut(s)	189, 356, 409, 565, 809, 1331
MalI	GATC	4 cut(s)	371, 418, 722, 988
MbiI	CCGCTC	1 cut(s)	380
MboI	GATC	4 cut(s)	369, 416, 720, 986
MboII	GAAGA	6 cut(s)	366, 559, 846, 892, 962, 983
MfeI	CAATTG	2 cut(s)	573, 846
MflI	RGATCY	3 cut(s)	369, 416, 720
MhlI	GDGCHC	1 cut(s)	1167
MlsI	TGGCCA	1 cut(s)	1220
MluCI	AATT	5 cut(s)	573, 846, 1032, 1089, 1117
MluNI	TGGCCA	1 cut(s)	1220
MlyI	GAGTC	1 cut(s)	111
MmeI	TCCRAC	3 cut(s)	35, 748, 968
Mox20I	TGGCCA	1 cut(s)	1220
Mph1103I	ATGCAT	1 cut(s)	1242
MscI	TGGCCA	1 cut(s)	1220
MseI	TTAA	2 cut(s)	255, 1473
MslI	CAYNNNNRTG	3 cut(s)	444, 612, 735
Msp20I	TGGCCA	1 cut(s)	1220
MspA1I	CMGCKG	2 cut(s)	113, 675
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	2 cut(s)	24, 1053
MunI	CAATTG	2 cut(s)	573, 846
Mva1269I	GAATGC	3 cut(s)	888, 1111, 1211
MvaI	CCWGG	1 cut(s)	1053
NciI	CCSGG	1 cut(s)	24
NdeII	GATC	4 cut(s)	369, 416, 720, 986
NheI	GCTAGC	1 cut(s)	817
NlaIII	CATG	7 cut(s)	178, 443, 611, 817, 1023, 1219, 1471
NlaIV	GGNNCC	1 cut(s)	418
NmeAIII	GCCGAG	1 cut(s)	1283
NmuCI	GTSAC	1 cut(s)	189
NsiI	ATGCAT	1 cut(s)	1242
NspI	RCATGY	3 cut(s)	443, 817, 1023
PagI	TCATGA	1 cut(s)	174
PciI	ACATGT	1 cut(s)	439
PctI	GAATGC	3 cut(s)	888, 1111, 1211
PfeI	GAWTC	3 cut(s)	344, 940, 1462
PleI	GAGTC	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	110
PscI	ACATGT	1 cut(s)	439
PsiI	TTATAA	2 cut(s)	366, 1515
Psp6I	CCWGG	1 cut(s)	1051
PspFI	CCCAGC	2 cut(s)	560, 1013
PspGI	CCWGG	1 cut(s)	1051
PspN4I	GGNNCC	1 cut(s)	418
PspPI	GGNCC	3 cut(s)	453, 617, 872
PsuI	RGATCY	3 cut(s)	369, 416, 720
PvuII	CAGCTG	2 cut(s)	113, 675
RsaI	GTAC	1 cut(s)	844
RsaNI	GTAC	1 cut(s)	843
RseI	CAYNNNNRTG	3 cut(s)	444, 612, 735
SaqAI	TTAA	2 cut(s)	255, 1473
Sau3AI	GATC	4 cut(s)	369, 416, 720, 986
Sau96I	GGNCC	3 cut(s)	453, 617, 872
SchI	GAGTC	1 cut(s)	111
ScrFI	CCNGG	2 cut(s)	24, 1053
SduI	GDGCHC	1 cut(s)	1167
SfaNI	GCATC	6 cut(s)	547, 619, 1078, 1216, 1227, 1249
SfcI	CTRYAG	1 cut(s)	391
SinI	GGWCC	2 cut(s)	453, 617
SmiMI	CAYNNNNRTG	3 cut(s)	444, 612, 735
Sse9I	AATT	5 cut(s)	573, 846, 1032, 1089, 1117
SsiI	CCGC	2 cut(s)	378, 1249
SspI	AATATT	1 cut(s)	1047
SspMI	CTAG	2 cut(s)	818, 1506
StyD4I	CCNGG	2 cut(s)	22, 1051
StyI	CCWWGG	4 cut(s)	772, 868, 1221, 1505
TaaI	ACNGT	5 cut(s)	268, 493, 503, 743, 1484
TaqI	TCGA	1 cut(s)	989
TasI	AATT	5 cut(s)	573, 846, 1032, 1089, 1117
TauI	GCSGC	1 cut(s)	1252
TfiI	GAWTC	3 cut(s)	344, 940, 1462
Tru1I	TTAA	2 cut(s)	255, 1473
Tru9I	TTAA	2 cut(s)	255, 1473
TscAI	CASTG	6 cut(s)	148, 198, 273, 328, 508, 1390
TseFI	GTSAC	1 cut(s)	189
Tsp45I	GTSAC	1 cut(s)	189
TspDTI	ATGAA	7 cut(s)	19, 163, 191, 251, 545, 893, 1204
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	6 cut(s)	148, 198, 273, 328, 508, 1390
VpaK11BI	GGWCC	2 cut(s)	453, 617
XapI	RAATTY	3 cut(s)	1032, 1089, 1117
XceI	RCATGY	3 cut(s)	443, 817, 1023
XmaJI	CCTAGG	1 cut(s)	1505
XspI	CTAG	2 cut(s)	818, 1506
Zsp2I	ATGCAT	1 cut(s)	1242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.