Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0003391

Physical Location & Seq

Genomic Coordinates Forward (+)

1730144 .. 1732897

Gene Structure 2754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g02890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGGTGAGGAATTTGGTTGCATTGCTTCTGGTTTTTCTGCTTCTCTCTGGGGATTTCTCTTCAGGAGCATCTGCCACACCTCCTGCAAAAATTGTAACTGGGGTTGTCTCCAATGTGGTTTCTGCTCTTTTCAAATGGCTCTGGTCACTGAAATCCACCTCAAAAACCAATTCAGCTGTTTCTAGCCGTTCGATGATCAAATTTGAAGGTGGATATACCGTGGATACGGTGTTCGATGGAAGTAAGCTTGGAATTGAACCACATTCAGTTGAATTATCCCCAAGTGGAGAGCTTCTGGTTTTGGATTCCGAAAATAGTAACATCTACAAGATCTCAATGCCATTGTCTCGTTATAGCCGACCCAAGTTGATTTCTGGATCACCTGAGGGTTACTCTGGGTATGTGGACGGGAGGCCAAGAGAAGCAAGAATGAACCACCCAAAAGGGCTGACTGTGGATGATAGAGGAAATATTTATATCGCAGACACAATGAATATGGCTATCAGGAAGATAAGTGACACCGGGGTTACGACTATTGCTGGTGGAAAATGGGGCAGAGGAGGTGGTCATGTTGATGGTCCAAGTGAAGATGCAAAGTTTTCTAGTGATTTTGATGTGATATACGTCAGTAGCAGCTGCTCTCTTTTGGTTATTGACAGAGGAAACCAGGCAATTCGGGAGATCCAACTCCACTATGATGACTGTAACGACCGCTATGATGGAACTTTCGGTTTAGGAATAGCAATGCTGATTGCAGCTGCATTCTTTGGTTACATGCTGGCACTGCTGCAGCGTAGGGTGCAAGCAATGTTTTCGTCAAATGATATAAGTTATTTACAGGATCAAAGAACTATACATAGGGCTGCAACAGTGGCACCATATCAGAGGCCTCCTAAATCCGTCAGGCCCCCTTTAATTCCAAATGAAGATGAAACTGAGAAACTAGATGACGGCTTCTTTGGTTCACTAGGGAAGATCGTCCTCAACACTGGCTTGGCTGTGTCTGAAATCTTTGGGGGAATATTTACGGGCTTTAGAAGTAAGCCCCGACAATATCACATTCAGCAGCAGTATCATGAAGCTAATAAACATTCAAATGCTTGGCCCATGCAAGACAGCTATGTGGTTCCAGACGAAGACGAGCCTCCATCATTAGAAACGAGATCCCCAACCCCAAATAAAACCTACCCATACATGACCAAAGACCTGGAGAAGCCTCGCCATTCGAAGCAAAGTCAAGCTTACTATAATTCATGGGAGGGTGAATGTCAGCAACATCAACAACAGCAGCAGCAACAACTTCAGATGCAGCTGCAGCAGCACCATCACAGGCATTACTCAACAAACCCGACTACATACTACAAGGAGAGCAGTGAGACAAACGAAATTGTGTTTGGGGCCGTCCAAGAACAGGATGGACGGCGTGAAGCTGTGGTGATAAAGGCAGTAGACTATGGAGATTCTAGATATAACCACCAAAATATTCGACAGCGTTTCAATTATATGGATTATAATTCCTCTGGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

510

Amino Acids

57.13

Weight (kDa)

6.44

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70280 AT1G70280
fragaria_vesca	FvH4_4g34810 FvH4_4g34810 FvH4_6g50490 FvH4_6g50490
malus_domestica	MD09G1036000.v1.1 MD13G1089500.v1.1 MD16G1089700.v1.1 MD17G1037600.v1.1
prunus_persica	Prupe.1G256300_v2.0.a1 Prupe.3G281800_v2.0.a1 Prupe.3G281800_v2.0.a1
pyrus_communis	pycom111g02890 pycom13g07800 pycom16g07680 pycom17g03370
rosa_chinensis	RchiOBHm_Chr2g0170891 RchiOBHm_Chr4g0444151
rosa_laevigata	RLG00000021991
rosa_multiflora	Rmu_sc0009938.1_g000002 Rmu_sc0012638.1_g000012
rosa_roxburghii	Rroxscaffold_2G00080990 Rroxscaffold_5G00384740
rosa_rugosa	Rorug02G0552200 Rorug04G0350500
rosa_samantha	Rh2AG624900 Rh2BG635600 Rh2CG604300 Rh2DG647200 Rh4AG411100 Rh4BG422500 Rh4CG436900 Rh4DG417800
rosa_wichuraiana	Rw2G051760 Rw4G035320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1512
AccB1I	GGYRCC	1 cut(s)	874
AccI	GTMKAC	1 cut(s)	1449
AciI	CCGC	1 cut(s)	712
AclWI	GGATC	4 cut(s)	385, 676, 849, 1158
AcsI	RAATTY	2 cut(s)	10, 200
AcuI	CTGAAG	2 cut(s)	45, 1286
AfiI	CCNNNNNNNGG	1 cut(s)	1411
AgsI	TTSAA	6 cut(s)	133, 206, 257, 272, 1095, 1498
AjnI	CCWGG	2 cut(s)	666, 1206
AjuI	GAANNNNNNNTTGG	2 cut(s)	1377, 1409
AloI	GAACNNNNNNTCC	2 cut(s)	215, 247
Alw26I	GTCTC	3 cut(s)	112, 351, 1370
AlwI	GGATC	4 cut(s)	385, 676, 849, 1158
AoxI	GGCC	5 cut(s)	413, 887, 905, 1103, 1398
ApoI	RAATTY	2 cut(s)	10, 200
ArsI	GACNNNNNNTTYG	2 cut(s)	941, 973
AspS9I	GGNCC	4 cut(s)	578, 906, 1104, 1398
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	4 cut(s)	16, 372, 1274, 1447
AsuII	TTCGAA	1 cut(s)	1226
AvaII	GGWCC	1 cut(s)	578
AxyI	CCTNAGG	1 cut(s)	384
BanI	GGYRCC	1 cut(s)	874
BbsI	GAAGAC	1 cut(s)	1143
BccI	CCATC	6 cut(s)	230, 569, 713, 1156, 1332, 1409
BceAI	ACGGC	4 cut(s)	171, 967, 1385, 1436
BcgI	CGANNNNNNTGC	2 cut(s)	795, 829
BciT130I	CCWGG	2 cut(s)	668, 1208
BciVI	GTATCC	1 cut(s)	217
BclI	TGATCA	1 cut(s)	195
BcnI	CCSGG	1 cut(s)	523
BcoDI	GTCTC	3 cut(s)	112, 351, 1370
BfaI	CTAG	5 cut(s)	183, 603, 944, 968, 1464
BfmI	CTRYAG	2 cut(s)	788, 1313
BfuI	GTATCC	1 cut(s)	217
BglII	AGATCT	1 cut(s)	330
Bme1390I	CCNGG	3 cut(s)	523, 668, 1208
Bme18I	GGWCC	1 cut(s)	578
BmgT120I	GGNCC	4 cut(s)	578, 906, 1104, 1398
BmiI	GGNNCC	4 cut(s)	876, 908, 1128, 1399
BmrFI	CCNGG	3 cut(s)	523, 668, 1208
BmrI	ACTGGG	1 cut(s)	108
BmsI	GCATC	3 cut(s)	77, 580, 1296
BmuI	ACTGGG	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	1143
BplI	GAGNNNNNCTC	2 cut(s)	377, 409
BpmI	CTGGAG	1 cut(s)	1229
Bpu14I	TTCGAA	1 cut(s)	1226
BpuMI	CCSGG	1 cut(s)	523
BsaJI	CCNNGG	2 cut(s)	219, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	1411
Bse1I	ACTGG	2 cut(s)	103, 994
Bse21I	CCTNAGG	1 cut(s)	384
Bse3DI	GCAATG	3 cut(s)	20, 750, 813
BseBI	CCWGG	2 cut(s)	668, 1208
BseDI	CCNNGG	2 cut(s)	219, 522
BseGI	GGATG	2 cut(s)	463, 1420
BseLI	CCNNNNNNNGG	1 cut(s)	1411
BseMI	GCAATG	3 cut(s)	20, 750, 813
BseMII	CTCAG	2 cut(s)	375, 927
BseNI	ACTGG	2 cut(s)	103, 994
BseRI	GAGGAG	1 cut(s)	573
Bsh1285I	CGRYCG	1 cut(s)	712
BshFI	GGCC	5 cut(s)	415, 889, 907, 1105, 1400
BshNI	GGYRCC	1 cut(s)	874
BsiEI	CGRYCG	1 cut(s)	712
BsiSI	CCGG	1 cut(s)	522
BslI	CCNNNNNNNGG	1 cut(s)	1411
BsmAI	GTCTC	3 cut(s)	112, 351, 1370
BsmI	GAATGC	1 cut(s)	761
BsnI	GGCC	5 cut(s)	415, 889, 907, 1105, 1400
Bsp119I	TTCGAA	1 cut(s)	1226
Bsp143I	GATC	7 cut(s)	195, 330, 377, 681, 841, 975, 1163
BspACI	CCGC	1 cut(s)	712
BspANI	GGCC	5 cut(s)	415, 889, 907, 1105, 1400
BspCNI	CTCAG	2 cut(s)	376, 928
BspHI	TCATGA	1 cut(s)	1075
BspLI	GGNNCC	4 cut(s)	876, 908, 1128, 1399
BspMAI	CTGCAG	2 cut(s)	792, 1317
BspPI	GGATC	4 cut(s)	385, 676, 849, 1158
BspT104I	TTCGAA	1 cut(s)	1226
BspT107I	GGYRCC	1 cut(s)	874
BsrDI	GCAATG	3 cut(s)	20, 750, 813
BsrI	ACTGG	2 cut(s)	103, 994
BssECI	CCNNGG	2 cut(s)	219, 522
BssMI	GATC	7 cut(s)	195, 330, 377, 681, 841, 975, 1163
Bst2UI	CCWGG	2 cut(s)	668, 1208
Bst4CI	ACNGT	5 cut(s)	220, 229, 454, 704, 871
Bst6I	CTCTTC	1 cut(s)	64
BstBI	TTCGAA	1 cut(s)	1226
BstC8I	GCNNGC	2 cut(s)	780, 804
BstDEI	CTNAG	2 cut(s)	384, 936
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	2 cut(s)	463, 1420
BstKTI	GATC	7 cut(s)	198, 333, 380, 684, 844, 978, 1166
BstMAI	GTCTC	3 cut(s)	112, 351, 1370
BstMBI	GATC	7 cut(s)	195, 330, 377, 681, 841, 975, 1163
BstMCI	CGRYCG	1 cut(s)	712
BstMWI	GCNNNNNNNGC	5 cut(s)	784, 799, 872, 1315, 1318
BstNI	CCWGG	2 cut(s)	668, 1208
BstNSI	RCATGY	1 cut(s)	778
BstSCI	CCNGG	3 cut(s)	521, 666, 1206
BstSFI	CTRYAG	2 cut(s)	788, 1313
BstV2I	GAAGAC	1 cut(s)	1143
BstX2I	RGATCY	3 cut(s)	330, 681, 1163
BstXI	CCANNNNNNTGG	1 cut(s)	1207
BstYI	RGATCY	3 cut(s)	330, 681, 1163
Bsu36I	CCTNAGG	1 cut(s)	384
BsuI	GTATCC	1 cut(s)	217
BsuRI	GGCC	5 cut(s)	415, 889, 907, 1105, 1400
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	2 cut(s)	463, 1420
BtsI	GCAGTG	2 cut(s)	782, 1378
BtsIMutI	CAGTG	5 cut(s)	146, 782, 876, 987, 1378
Cac8I	GCNNGC	2 cut(s)	780, 804
CciI	TCATGA	1 cut(s)	1075
Cfr13I	GGNCC	4 cut(s)	578, 906, 1104, 1398
CviAII	CATG	6 cut(s)	569, 775, 1076, 1108, 1195, 1254
DdeI	CTNAG	2 cut(s)	384, 936
DpnI	GATC	7 cut(s)	197, 332, 379, 683, 843, 977, 1165
DpnII	GATC	7 cut(s)	195, 330, 377, 681, 841, 975, 1163
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco147I	AGGCCT	1 cut(s)	889
Eco47I	GGWCC	1 cut(s)	578
Eco57I	CTGAAG	2 cut(s)	45, 1286
Eco81I	CCTNAGG	1 cut(s)	384
EcoO109I	RGGNCCY	1 cut(s)	906
EcoRII	CCWGG	2 cut(s)	666, 1206
FaeI	CATG	6 cut(s)	572, 778, 1079, 1111, 1198, 1257
FalI	AAGNNNNNCTT	2 cut(s)	1225, 1257
FatI	CATG	6 cut(s)	568, 774, 1075, 1107, 1194, 1253
FbaI	TGATCA	1 cut(s)	195
FblI	GTMKAC	1 cut(s)	1449
FokI	GGATG	2 cut(s)	470, 1427
FspBI	CTAG	5 cut(s)	183, 603, 944, 968, 1464
GsuI	CTGGAG	1 cut(s)	1229
HaeIII	GGCC	5 cut(s)	415, 889, 907, 1105, 1400
HapII	CCGG	1 cut(s)	522
Hin1II	CATG	6 cut(s)	572, 778, 1079, 1111, 1198, 1257
HindIII	AAGCTT	2 cut(s)	245, 1239
HinfI	GANTC	2 cut(s)	305, 1460
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	4 cut(s)	16, 372, 1274, 1447
Hpy166II	GTNNAC	3 cut(s)	406, 965, 1450
Hpy188I	TCNGA	4 cut(s)	310, 885, 1006, 1305
Hpy188III	TCNNGA	7 cut(s)	63, 375, 505, 677, 1076, 1130, 1464
Hpy8I	GTNNAC	3 cut(s)	406, 965, 1450
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	5 cut(s)	220, 229, 454, 704, 871
HpyCH4IV	ACGT	1 cut(s)	624
HpyF10VI	GCNNNNNNNGC	5 cut(s)	784, 799, 872, 1315, 1318
HpyF3I	CTNAG	2 cut(s)	384, 936
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	6 cut(s)	572, 778, 1079, 1111, 1198, 1257
Ksp22I	TGATCA	1 cut(s)	195
Kzo9I	GATC	7 cut(s)	195, 330, 377, 681, 841, 975, 1163
LmnI	GCTCC	1 cut(s)	65
LweI	GCATC	3 cut(s)	77, 580, 1296
MaeI	CTAG	5 cut(s)	183, 603, 944, 968, 1464
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	9 cut(s)	94, 144, 317, 389, 515, 526, 704, 770, 1523
MalI	GATC	7 cut(s)	197, 332, 379, 683, 843, 977, 1165
MboI	GATC	7 cut(s)	195, 330, 377, 681, 841, 975, 1163
MboII	GAAGA	6 cut(s)	51, 520, 599, 938, 985, 1148
MflI	RGATCY	3 cut(s)	330, 681, 1163
MmeI	TCCRAC	1 cut(s)	709
MseI	TTAA	1 cut(s)	914
MslI	CAYNNNNRTG	3 cut(s)	573, 696, 1095
MspA1I	CMGCKG	4 cut(s)	176, 636, 758, 1312
MspI	CCGG	1 cut(s)	522
MspR9I	CCNGG	3 cut(s)	523, 668, 1208
Mva1269I	GAATGC	1 cut(s)	761
MvaI	CCWGG	2 cut(s)	668, 1208
MwoI	GCNNNNNNNGC	5 cut(s)	784, 799, 872, 1315, 1318
NciI	CCSGG	1 cut(s)	523
NdeII	GATC	7 cut(s)	195, 330, 377, 681, 841, 975, 1163
NlaIII	CATG	6 cut(s)	572, 778, 1079, 1111, 1198, 1257
NlaIV	GGNNCC	4 cut(s)	876, 908, 1128, 1399
NmuCI	GTSAC	2 cut(s)	144, 515
NspI	RCATGY	1 cut(s)	778
NspV	TTCGAA	1 cut(s)	1226
PagI	TCATGA	1 cut(s)	1075
PceI	AGGCCT	1 cut(s)	889
PcsI	WCGNNNNNNNCGW	1 cut(s)	355
PctI	GAATGC	1 cut(s)	761
PfeI	GAWTC	2 cut(s)	305, 1460
PsiI	TTATAA	1 cut(s)	1512
Psp6I	CCWGG	2 cut(s)	666, 1206
PspGI	CCWGG	2 cut(s)	666, 1206
PspN4I	GGNNCC	4 cut(s)	876, 908, 1128, 1399
PspPI	GGNCC	4 cut(s)	578, 906, 1104, 1398
PstI	CTGCAG	2 cut(s)	792, 1317
PsuI	RGATCY	3 cut(s)	330, 681, 1163
PvuII	CAGCTG	4 cut(s)	176, 636, 758, 1312
RseI	CAYNNNNRTG	3 cut(s)	573, 696, 1095
SaqAI	TTAA	1 cut(s)	914
Sau3AI	GATC	7 cut(s)	195, 330, 377, 681, 841, 975, 1163
Sau96I	GGNCC	4 cut(s)	578, 906, 1104, 1398
ScrFI	CCNGG	3 cut(s)	523, 668, 1208
SfaNI	GCATC	3 cut(s)	77, 580, 1296
SfcI	CTRYAG	2 cut(s)	788, 1313
SfuI	TTCGAA	1 cut(s)	1226
SinI	GGWCC	1 cut(s)	578
SmiMI	CAYNNNNRTG	3 cut(s)	573, 696, 1095
SseBI	AGGCCT	1 cut(s)	889
SsiI	CCGC	1 cut(s)	712
SspI	AATATT	3 cut(s)	472, 1023, 1483
SspMI	CTAG	5 cut(s)	183, 603, 944, 968, 1464
StuI	AGGCCT	1 cut(s)	889
StyD4I	CCNGG	3 cut(s)	521, 666, 1206
TaaI	ACNGT	5 cut(s)	220, 229, 454, 704, 871
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	4 cut(s)	191, 234, 1226, 1486
TfiI	GAWTC	2 cut(s)	305, 1460
Tru1I	TTAA	1 cut(s)	914
Tru9I	TTAA	1 cut(s)	914
TscAI	CASTG	5 cut(s)	153, 789, 876, 994, 1378
TseFI	GTSAC	2 cut(s)	144, 515
Tsp45I	GTSAC	2 cut(s)	144, 515
TspDTI	ATGAA	6 cut(s)	446, 506, 939, 945, 1092, 1242
TspGWI	ACGGA	1 cut(s)	889
TspRI	CASTG	5 cut(s)	153, 789, 876, 994, 1378
VpaK11BI	GGWCC	1 cut(s)	578
XapI	RAATTY	2 cut(s)	10, 200
XbaI	TCTAGA	1 cut(s)	1463
XceI	RCATGY	1 cut(s)	778
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1412
XmiI	GTMKAC	1 cut(s)	1449
XspI	CTAG	5 cut(s)	183, 603, 944, 968, 1464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.