Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0003391

Physical Location & Seq

Genomic Coordinates Forward (+)

2232778 .. 2235608

Gene Structure 2831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g03370.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGGTGAGGAATTGGGTTGCATTGCTTCTGATTTTTCTTCTGCTCTCTGGGGATTTCTCATCAGGAGTAGCTGCCTCACCTCCTGCAAAAATTGTAACTGGGATTGTCACCAATGTGATTTCTGCTCTTGTCAAATGGCTCTGGTCACTGAAATCCACCACAAAAACCAGTTCAGCTGTTTCCAGCCGTTCGATGATGAAATTTGAGGGTGGATACACCGTGGATACGGTGTTTGATGGAAGTAAGCTCGGAATTGAACCACACTCGGTTGAAGTGTCCCCAAGTGGAGAGCTTCTGGTTTTGGACTCCGAAAATAGTAACATCTACAAGATCTCAATGCCACTGTCTCGATATAGCCGACCCAAGCTGATTTCTGGATCGCCTGAGGGGTACTCTGGGCATGTGGACGGGAGGCCAAGAGAAGCAAGAATGAACCACCCAAAAGGGCTGACTGTGGATGATAGAGGAAATATTTATATCGCAGACACAATGAATATGGCTATCAGGAAGATAAGTGATGCCGGGGTTACGACTATTGCTGGTGGACAATGGAGCAGAGGAGGTGGTCATGTTGATGGTCCAAGTGAAGACGCAAAGTTTTCTACTGATTTTGATGTGGTATACGTAGGCAGCAGCTGCTCTCTTTTGGTTATAGACAGAGGAAACCAGGCGATTCGGGAGATCCAACTCCACTATGATGACTGTAATGACCACTACGATGGAACTTTCGGTTTAGGAATAGCAATGCTGATGGCAGCTGCATTCTTTGGTTACATGCTGGCATTGCTGCAGCGTAGGGTGCAAGCAATGTTTTCGTCAAATGATGCAAGTTATTTACAGGACCAAAGAACTCCTATACATAGGGCTGCAACAGTAGCACCATATCAGATGCCTCCAAAATCCGTCAGGCCCCCTTTAATTCCAAATGAAGATGAACCCGAGAAACTAGATGACGGCTTCTTTGGTTCACTAGGAAAGATCGTTCTCAACACTGGCTCGTCTGTGGCTGAAATCTTTGGGGGAGTATTTACGGGCTTTAGAAGTAAGCCCCGACAATATCACATACAGCAGCAGTATCATCAAACTAATGAACATTCAAATGCTTGGCCCGTGCAAGACAGCTATGTTATTCCAGACGAAGACGAGCCTCCATCAATAGAAACCAGATCCCCAACCCCGAATAAAACCTATCCATACATGACCAAAGACCTAGAGAAGCCTCGCCGTTCGAAGCAAAGTCAAGCCTACTATAATTCATGGGAGGGCGAATATCAGCAACATCAACAATGCAGCAGCATCAGCAACAGCAGCAGCATCACAGGCATTACTCAACAAACCCAAATACATACTACGAGAAGAGCAGCGAGACAAATGAGATTGTGTTTGGGGCGGTTCAAGAACAGGATGGACGGCGTGAAGCTGTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

476

Amino Acids

52.72

Weight (kDa)

7.71

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70280 AT1G70280
fragaria_vesca	FvH4_4g34810 FvH4_4g34810 FvH4_6g50490 FvH4_6g50490
malus_domestica	MD09G1036000.v1.1 MD13G1089500.v1.1 MD16G1089700.v1.1 MD17G1037600.v1.1
prunus_persica	Prupe.1G256300_v2.0.a1 Prupe.3G281800_v2.0.a1 Prupe.3G281800_v2.0.a1
pyrus_communis	pycom111g02890 pycom13g07800 pycom16g07680 pycom17g03370
rosa_chinensis	RchiOBHm_Chr2g0170891 RchiOBHm_Chr4g0444151
rosa_laevigata	RLG00000021991
rosa_multiflora	Rmu_sc0009938.1_g000002 Rmu_sc0012638.1_g000012
rosa_roxburghii	Rroxscaffold_2G00080990 Rroxscaffold_5G00384740
rosa_rugosa	Rorug02G0552200 Rorug04G0350500
rosa_samantha	Rh2AG624900 Rh2BG635600 Rh2CG604300 Rh2DG647200 Rh4AG411100 Rh4BG422500 Rh4CG436900 Rh4DG417800
rosa_wichuraiana	Rw2G051760 Rw4G035320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	621
AciI	CCGC	1 cut(s)	1390
AclWI	GGATC	3 cut(s)	385, 676, 1161
AcsI	RAATTY	1 cut(s)	200
AfaI	GTAC	1 cut(s)	392
AgsI	TTSAA	4 cut(s)	257, 272, 1098, 1396
AjnI	CCWGG	1 cut(s)	666
AleI	CACNNNNGTG	1 cut(s)	113
AloI	GAACNNNNNNTCC	2 cut(s)	966, 998
AluBI	AGCT	9 cut(s)	71, 176, 247, 292, 367, 636, 758, 1122, 1420
AluI	AGCT	9 cut(s)	71, 176, 247, 292, 367, 636, 758, 1122, 1420
Alw26I	GTCTC	2 cut(s)	351, 1360
AlwI	GGATC	3 cut(s)	385, 676, 1161
AlwNI	CAGNNNCTG	1 cut(s)	636
Ama87I	CYCGRG	1 cut(s)	938
AoxI	GGCC	3 cut(s)	413, 908, 1106
ApoI	RAATTY	1 cut(s)	200
ArsI	GACNNNNNNTTYG	2 cut(s)	944, 976
AspS9I	GGNCC	4 cut(s)	578, 841, 909, 1107
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	3 cut(s)	16, 69, 100
AsuII	TTCGAA	1 cut(s)	1229
AvaI	CYCGRG	1 cut(s)	938
AvaII	GGWCC	2 cut(s)	578, 841
AxyI	CCTNAGG	1 cut(s)	384
BbsI	GAAGAC	2 cut(s)	594, 1146
BccI	CCATC	6 cut(s)	230, 569, 713, 745, 1159, 1399
BceAI	ACGGC	4 cut(s)	171, 970, 1209, 1426
BcgI	CGANNNNNNTGC	2 cut(s)	795, 829
BciT130I	CCWGG	1 cut(s)	668
BciVI	GTATCC	2 cut(s)	206, 217
BcnI	CCSGG	1 cut(s)	523
BcoDI	GTCTC	2 cut(s)	351, 1360
BfaI	CTAG	3 cut(s)	947, 971, 1211
BfmI	CTRYAG	1 cut(s)	788
BfuI	GTATCC	2 cut(s)	206, 217
BglII	AGATCT	1 cut(s)	330
Bme1390I	CCNGG	2 cut(s)	523, 668
Bme18I	GGWCC	2 cut(s)	578, 841
BmeT110I	CYCGRG	1 cut(s)	938
BmgT120I	GGNCC	4 cut(s)	578, 841, 909, 1107
BmiI	GGNNCC	1 cut(s)	911
BmrFI	CCNGG	2 cut(s)	523, 668
BmrI	ACTGGG	1 cut(s)	108
BmsI	GCATC	5 cut(s)	508, 814, 879, 1305, 1323
BmuI	ACTGGG	1 cut(s)	108
BpiI	GAAGAC	2 cut(s)	594, 1146
BplI	GAGNNNNNCTC	2 cut(s)	377, 409
Bpu14I	TTCGAA	1 cut(s)	1229
BpuMI	CCSGG	1 cut(s)	523
BsaAI	YACGTR	1 cut(s)	625
BsaJI	CCNNGG	2 cut(s)	219, 522
Bse1I	ACTGG	3 cut(s)	103, 168, 997
Bse21I	CCTNAGG	1 cut(s)	384
Bse3DI	GCAATG	4 cut(s)	20, 750, 782, 813
BseBI	CCWGG	1 cut(s)	668
BseDI	CCNNGG	2 cut(s)	219, 522
BseGI	GGATG	2 cut(s)	463, 1410
BseMI	GCAATG	4 cut(s)	20, 750, 782, 813
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	3 cut(s)	103, 168, 997
BseRI	GAGGAG	1 cut(s)	573
BshFI	GGCC	3 cut(s)	415, 910, 1108
BsiHKCI	CYCGRG	1 cut(s)	938
BsiSI	CCGG	1 cut(s)	522
BslFI	GGGAC	1 cut(s)	262
BsmAI	GTCTC	2 cut(s)	351, 1360
BsmFI	GGGAC	1 cut(s)	262
BsmI	GAATGC	1 cut(s)	761
BsnI	GGCC	3 cut(s)	415, 910, 1108
BsoBI	CYCGRG	1 cut(s)	938
Bsp119I	TTCGAA	1 cut(s)	1229
Bsp143I	GATC	5 cut(s)	330, 377, 681, 978, 1166
BspACI	CCGC	1 cut(s)	1390
BspANI	GGCC	3 cut(s)	415, 910, 1108
BspCNI	CTCAG	1 cut(s)	376
BspLI	GGNNCC	1 cut(s)	911
BspMAI	CTGCAG	1 cut(s)	792
BspPI	GGATC	3 cut(s)	385, 676, 1161
BspQI	GCTCTTC	1 cut(s)	1351
BspT104I	TTCGAA	1 cut(s)	1229
BsrDI	GCAATG	4 cut(s)	20, 750, 782, 813
BsrI	ACTGG	3 cut(s)	103, 168, 997
BssECI	CCNNGG	2 cut(s)	219, 522
BssMI	GATC	5 cut(s)	330, 377, 681, 978, 1166
BssNAI	GTATAC	1 cut(s)	622
Bst1107I	GTATAC	1 cut(s)	622
Bst2UI	CCWGG	1 cut(s)	668
Bst4CI	ACNGT	6 cut(s)	220, 229, 345, 454, 704, 874
Bst6I	CTCTTC	1 cut(s)	1351
BstAPI	GCANNNNNTGC	1 cut(s)	636
BstBAI	YACGTR	1 cut(s)	625
BstBI	TTCGAA	1 cut(s)	1229
BstC8I	GCNNGC	2 cut(s)	780, 804
BstDEI	CTNAG	1 cut(s)	384
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	2 cut(s)	463, 1410
BstKTI	GATC	5 cut(s)	333, 380, 684, 981, 1169
BstMAI	GTCTC	2 cut(s)	351, 1360
BstMBI	GATC	5 cut(s)	330, 377, 681, 978, 1166
BstMWI	GCNNNNNNNGC	7 cut(s)	636, 784, 799, 875, 1299, 1308, 1320
BstNI	CCWGG	1 cut(s)	668
BstNSI	RCATGY	2 cut(s)	404, 778
BstSCI	CCNGG	2 cut(s)	521, 666
BstSFI	CTRYAG	1 cut(s)	788
BstSNI	TACGTA	1 cut(s)	625
BstV2I	GAAGAC	2 cut(s)	594, 1146
BstX2I	RGATCY	3 cut(s)	330, 681, 1166
BstXI	CCANNNNNNTGG	1 cut(s)	719
BstYI	RGATCY	3 cut(s)	330, 681, 1166
BstZ17I	GTATAC	1 cut(s)	622
Bsu36I	CCTNAGG	1 cut(s)	384
BsuI	GTATCC	2 cut(s)	206, 217
BsuRI	GGCC	3 cut(s)	415, 910, 1108
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	2 cut(s)	463, 1410
BtsIMutI	CAGTG	3 cut(s)	146, 341, 990
Cac8I	GCNNGC	2 cut(s)	780, 804
CaiI	CAGNNNCTG	1 cut(s)	636
Cfr13I	GGNCC	4 cut(s)	578, 841, 909, 1107
CseI	GACGC	1 cut(s)	599
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	5 cut(s)	401, 569, 775, 1198, 1257
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	5 cut(s)	332, 379, 683, 980, 1168
DpnII	GATC	5 cut(s)	330, 377, 681, 978, 1166
Eam1104I	CTCTTC	1 cut(s)	1351
EarI	CTCTTC	1 cut(s)	1351
Eco105I	TACGTA	1 cut(s)	625
Eco47I	GGWCC	2 cut(s)	578, 841
Eco81I	CCTNAGG	1 cut(s)	384
Eco88I	CYCGRG	1 cut(s)	938
EcoO109I	RGGNCCY	1 cut(s)	909
EcoRII	CCWGG	1 cut(s)	666
FaeI	CATG	5 cut(s)	404, 572, 778, 1201, 1260
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	5 cut(s)	400, 568, 774, 1197, 1256
FblI	GTMKAC	1 cut(s)	621
FokI	GGATG	2 cut(s)	470, 1417
FspBI	CTAG	3 cut(s)	947, 971, 1211
HaeIII	GGCC	3 cut(s)	415, 910, 1108
HapII	CCGG	1 cut(s)	522
HgaI	GACGC	1 cut(s)	599
Hin1II	CATG	5 cut(s)	404, 572, 778, 1201, 1260
HinfI	GANTC	2 cut(s)	305, 673
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	3 cut(s)	16, 69, 100
Hpy166II	GTNNAC	4 cut(s)	406, 545, 622, 968
Hpy188I	TCNGA	4 cut(s)	30, 251, 310, 888
Hpy188III	TCNNGA	7 cut(s)	63, 348, 375, 505, 677, 1133, 1396
Hpy8I	GTNNAC	4 cut(s)	406, 545, 622, 968
HpyCH4III	ACNGT	6 cut(s)	220, 229, 345, 454, 704, 874
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	9 cut(s)	20, 86, 761, 790, 802, 827, 869, 1114, 1290
HpyF10VI	GCNNNNNNNGC	7 cut(s)	636, 784, 799, 875, 1299, 1308, 1320
HpyF3I	CTNAG	1 cut(s)	384
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	5 cut(s)	404, 572, 778, 1201, 1260
Kzo9I	GATC	5 cut(s)	330, 377, 681, 978, 1166
LguI	GCTCTTC	1 cut(s)	1351
LmnI	GCTCC	1 cut(s)	552
LweI	GCATC	5 cut(s)	508, 814, 879, 1305, 1323
MaeI	CTAG	3 cut(s)	947, 971, 1211
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	6 cut(s)	94, 106, 144, 317, 526, 770
MalI	GATC	5 cut(s)	332, 379, 683, 980, 1168
MboI	GATC	5 cut(s)	330, 377, 681, 978, 1166
MboII	GAAGA	6 cut(s)	29, 520, 599, 941, 1151, 1368
MflI	RGATCY	3 cut(s)	330, 681, 1166
MluCI	AATT	6 cut(s)	10, 90, 200, 252, 918, 1252
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	709
MseI	TTAA	1 cut(s)	917
MslI	CAYNNNNRTG	5 cut(s)	113, 573, 696, 717, 1098
MspA1I	CMGCKG	3 cut(s)	176, 636, 758
MspI	CCGG	1 cut(s)	522
MspR9I	CCNGG	2 cut(s)	523, 668
Mva1269I	GAATGC	1 cut(s)	761
MvaI	CCWGG	1 cut(s)	668
MwoI	GCNNNNNNNGC	7 cut(s)	636, 784, 799, 875, 1299, 1308, 1320
NciI	CCSGG	1 cut(s)	523
NdeII	GATC	5 cut(s)	330, 377, 681, 978, 1166
NlaIII	CATG	5 cut(s)	404, 572, 778, 1201, 1260
NlaIV	GGNNCC	1 cut(s)	911
NmuCI	GTSAC	2 cut(s)	106, 144
NspI	RCATGY	2 cut(s)	404, 778
NspV	TTCGAA	1 cut(s)	1229
OliI	CACNNNNGTG	1 cut(s)	113
PciSI	GCTCTTC	1 cut(s)	1351
PcsI	WCGNNNNNNNCGW	1 cut(s)	355
PctI	GAATGC	1 cut(s)	761
PfeI	GAWTC	1 cut(s)	673
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
Ppu21I	YACGTR	1 cut(s)	625
Psp6I	CCWGG	1 cut(s)	666
PspGI	CCWGG	1 cut(s)	666
PspN4I	GGNNCC	1 cut(s)	911
PspPI	GGNCC	4 cut(s)	578, 841, 909, 1107
PstI	CTGCAG	1 cut(s)	792
PstNI	CAGNNNCTG	1 cut(s)	636
PsuI	RGATCY	3 cut(s)	330, 681, 1166
PvuII	CAGCTG	3 cut(s)	176, 636, 758
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
RseI	CAYNNNNRTG	5 cut(s)	113, 573, 696, 717, 1098
SapI	GCTCTTC	1 cut(s)	1351
SaqAI	TTAA	1 cut(s)	917
Sau3AI	GATC	5 cut(s)	330, 377, 681, 978, 1166
Sau96I	GGNCC	4 cut(s)	578, 841, 909, 1107
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	2 cut(s)	523, 668
SfaNI	GCATC	5 cut(s)	508, 814, 879, 1305, 1323
SfcI	CTRYAG	1 cut(s)	788
SfuI	TTCGAA	1 cut(s)	1229
SinI	GGWCC	2 cut(s)	578, 841
SmiMI	CAYNNNNRTG	5 cut(s)	113, 573, 696, 717, 1098
SnaBI	TACGTA	1 cut(s)	625
Sse9I	AATT	6 cut(s)	10, 90, 200, 252, 918, 1252
SsiI	CCGC	1 cut(s)	1390
SspI	AATATT	1 cut(s)	472
SspMI	CTAG	3 cut(s)	947, 971, 1211
StyD4I	CCNGG	2 cut(s)	521, 666
TaaI	ACNGT	6 cut(s)	220, 229, 345, 454, 704, 874
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	3 cut(s)	191, 349, 1229
TasI	AATT	6 cut(s)	10, 90, 200, 252, 918, 1252
TfiI	GAWTC	1 cut(s)	673
Tru1I	TTAA	1 cut(s)	917
Tru9I	TTAA	1 cut(s)	917
TscAI	CASTG	3 cut(s)	153, 348, 997
TseFI	GTSAC	2 cut(s)	106, 144
Tsp45I	GTSAC	2 cut(s)	106, 144
TspDTI	ATGAA	7 cut(s)	212, 446, 506, 942, 948, 1104, 1245
TspGWI	ACGGA	1 cut(s)	892
TspRI	CASTG	3 cut(s)	153, 348, 997
VpaK11BI	GGWCC	2 cut(s)	578, 841
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	2 cut(s)	404, 778
XmiI	GTMKAC	1 cut(s)	621
XspI	CTAG	3 cut(s)	947, 971, 1211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.