Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003391

Physical Location & Seq

Genomic Coordinates Reverse (-)

37565028 .. 37568469

Gene Structure 3442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g50490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1569 bp

ATGTTGAGGAAATGGGTTTCCTTGGTTCTGATCTTTGTGATTCTCTCTGGGGACTTTTCATCAGTTTCAGCCACACCTCCTCCTGCAAGAATTGTAACTGGGATTGTCTCTAATGTGGTATCTACTCTTGTTAAATGGCTTTGGTCACTGAAATCCACCGCTAAAACCAGCACAGCGGTTTCTGGCCGTTCAATGGTGAAATTTGAGGGTGGATATACTGTAGATACGGTTTTCGATGGAAGTAAGCTTGGGATTGAACCCCACTCCATTGAAGTATCCCCAAGTGGAGATCTTCTGGTCTTGGATTCTGAGAATAGTAACATCTACAAGATTTCAACACCATTATCTAAATATAGCCGACCCAAACTCATAGCTGGGTCACCTGAAGGCTACTCGGGGCATGTAGATGGAAGGACAAGAGAAGCAAGAATGAACCACCCCAAAGGAATGACTATGGATGACAGAGGAAACATCTATATTGCAGACACAATGAATATGGCTATCAGGAAGATAACTGATGCTGGGGTTACTACTATTGCTGGTGGAAAATGGGGCCGAGGAGGTGGTCATGTTGATGGTCCAAGTGAAGATGCAAAGTTTTCTAGTGATTTTGATGTGGTTTATATTGGAAGTAGCTGCGCTCTTTTGGTTATTGACAGAGGAAACCAGGCAATTCGGGAGATCCAACTCCACTATGATGACTGTGCTGACCACCATGATGGTAGTTTCCATTTAGGAGTAGCAGTGCTACTTGCAGCTGCATTCTTTGGTTACATGCTGGCATTATTGCAGCGTCGAGTGCAAGCAATATTTTCATCAAATGATGATCAAACAACTGCTGCTATAAAGAGAGCTGCATCTATGACTCAGTACCAGATGCCTCCTAAATCTGTTAGGCCCCCTTTAATTCCCCCTGAATATGAACCTGAAAAACCAGATGATGGCTTCTTTGGCTCACTTGGGAAGATGATTCTCAACACTGGCTCATCTGTGGGTGAAATTGTTGGGGGATTGTTTACAGGTAGAAGAAAGTCCATCCATTATCAGATTCAACAGCAGTATCATCAAACTCAGAGAAGTTCAAATCCATGGCCTATGCAAGACAGCTTTGTGATTCCAGATGATGAGCCTCCTCCTCCATCCATAGAAACCAGAACCCCAACTCCAAAGAAAACCTACACTAAAGAACTGGAGAACCCCCGCCATTCTAAGCATAGTCGAGCCTACTATAATTCATGGGATGGTGAATATAACCAACAGCAACAACATCAAATGCAAATGCAGATGCAGATGCAGCAACAACAACAACAACAACACCAGATGCATTTGCAGATGCAGCGCCAGCAGCAGCAACAGCAGCATCATCATAGGCATTACTCATCAAACCCAAAGACATACTACGAGAGGAGCAGTGAGACTAATGAGATTGTGTTTGGAGCGGTTCAAGAACAAGGTGGACGTCGTGAAGCTGTAGTGATAAAGGCTGTAGACTATTCAGACCCTACATATAATCACTACAACATTCGACCACGGAGCAATTATACTGATTATAGTTCCCCTGGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

523

Amino Acids

58.59

Weight (kDa)

7.81

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70280 AT1G70280
fragaria_vesca	FvH4_4g34810 FvH4_4g34810 FvH4_6g50490 FvH4_6g50490
malus_domestica	MD09G1036000.v1.1 MD13G1089500.v1.1 MD16G1089700.v1.1 MD17G1037600.v1.1
prunus_persica	Prupe.1G256300_v2.0.a1 Prupe.3G281800_v2.0.a1 Prupe.3G281800_v2.0.a1
pyrus_communis	pycom111g02890 pycom13g07800 pycom16g07680 pycom17g03370
rosa_chinensis	RchiOBHm_Chr2g0170891 RchiOBHm_Chr4g0444151
rosa_laevigata	RLG00000021991
rosa_multiflora	Rmu_sc0009938.1_g000002 Rmu_sc0012638.1_g000012
rosa_roxburghii	Rroxscaffold_2G00080990 Rroxscaffold_5G00384740
rosa_rugosa	Rorug02G0552200 Rorug04G0350500
rosa_samantha	Rh2AG624900 Rh2BG635600 Rh2CG604300 Rh2DG647200 Rh4AG411100 Rh4BG422500 Rh4CG436900 Rh4DG417800
rosa_wichuraiana	Rw2G051760 Rw4G035320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1462
AccB7I	CCANNNNNTGG	1 cut(s)	941
AccBSI	CCGCTC	1 cut(s)	1439
AccI	GTMKAC	1 cut(s)	1488
AciI	CCGC	4 cut(s)	159, 176, 1201, 1439
AclWI	GGATC	1 cut(s)	676
AcoI	YGGCCR	1 cut(s)	184
AcsI	RAATTY	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	405
AcyI	GRCGYC	1 cut(s)	1459
AfaI	GTAC	1 cut(s)	872
AfiI	CCNNNNNNNGG	2 cut(s)	193, 941
AgsI	TTSAA	7 cut(s)	192, 257, 272, 336, 1052, 1083, 1445
AjnI	CCWGG	2 cut(s)	666, 1558
AloI	GAACNNNNNNTCC	2 cut(s)	1147, 1179
AluBI	AGCT	7 cut(s)	247, 374, 636, 758, 854, 1107, 1469
AluI	AGCT	7 cut(s)	247, 374, 636, 758, 854, 1107, 1469
Alw26I	GTCTC	2 cut(s)	112, 1409
AlwI	GGATC	1 cut(s)	676
Ama87I	CYCGRG	1 cut(s)	394
AoxI	GGCC	4 cut(s)	184, 553, 896, 1091
ApoI	RAATTY	1 cut(s)	200
AspLEI	GCGC	2 cut(s)	641, 1341
AspS9I	GGNCC	3 cut(s)	553, 578, 897
AsuHPI	GGTGA	4 cut(s)	208, 372, 1007, 1256
AvaI	CYCGRG	1 cut(s)	394
AvaII	GGWCC	1 cut(s)	578
BaeI	ACNNNNGTAYC	2 cut(s)	1043, 1076
BccI	CCATC	8 cut(s)	230, 401, 569, 713, 935, 1043, 1147, 1235
BceAI	ACGGC	1 cut(s)	171
BciT130I	CCWGG	2 cut(s)	668, 1560
BciVI	GTATCC	1 cut(s)	286
BclI	TGATCA	1 cut(s)	826
BcoDI	GTCTC	2 cut(s)	112, 1409
BfaI	CTAG	1 cut(s)	603
BfmI	CTRYAG	3 cut(s)	219, 1470, 1485
BfoI	RGCGCY	1 cut(s)	1342
BfuI	GTATCC	1 cut(s)	286
BglII	AGATCT	1 cut(s)	289
Bme1390I	CCNGG	2 cut(s)	668, 1560
Bme18I	GGWCC	1 cut(s)	578
BmeT110I	CYCGRG	1 cut(s)	394
BmgT120I	GGNCC	3 cut(s)	553, 578, 897
BmiI	GGNNCC	2 cut(s)	554, 899
BmrFI	CCNGG	2 cut(s)	668, 1560
BmrI	ACTGGG	1 cut(s)	108
BmsI	GCATC	9 cut(s)	508, 580, 866, 867, 1275, 1281, 1311, 1323, 1369
BmuI	ACTGGG	1 cut(s)	108
BpmI	CTGGAG	1 cut(s)	1211
BsaHI	GRCGYC	1 cut(s)	1459
BsaJI	CCNNGG	5 cut(s)	21, 556, 1088, 1529, 1558
BsaXI	ACNNNNNCTCC	6 cut(s)	64, 94, 729, 759, 1147, 1177
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 941
Bse1I	ACTGG	3 cut(s)	103, 985, 1194
BseBI	CCWGG	2 cut(s)	668, 1560
BseDI	CCNNGG	5 cut(s)	21, 556, 1088, 1529, 1558
BseGI	GGATG	4 cut(s)	463, 1035, 1139, 1246
BseLI	CCNNNNNNNGG	2 cut(s)	193, 941
BseMII	CTCAG	3 cut(s)	300, 881, 1085
BseNI	ACTGG	3 cut(s)	103, 985, 1194
BseRI	GAGGAG	5 cut(s)	69, 573, 1122, 1125, 1420
BseYI	CCCAGC	2 cut(s)	374, 521
BshFI	GGCC	4 cut(s)	186, 555, 898, 1093
BsiHKCI	CYCGRG	1 cut(s)	394
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	193, 941
BsmAI	GTCTC	2 cut(s)	112, 1409
BsmFI	GGGAC	1 cut(s)	65
BsmI	GAATGC	1 cut(s)	761
BsnI	GGCC	4 cut(s)	186, 555, 898, 1093
BsoBI	CYCGRG	1 cut(s)	394
Bsp143I	GATC	4 cut(s)	30, 289, 681, 826
Bsp19I	CCATGG	1 cut(s)	1088
BspACI	CCGC	4 cut(s)	159, 176, 1201, 1439
BspANI	GGCC	4 cut(s)	186, 555, 898, 1093
BspCNI	CTCAG	3 cut(s)	301, 880, 1084
BspLI	GGNNCC	2 cut(s)	554, 899
BspPI	GGATC	1 cut(s)	676
BsrBI	CCGCTC	1 cut(s)	1439
BsrI	ACTGG	3 cut(s)	103, 985, 1194
BssECI	CCNNGG	5 cut(s)	21, 556, 1088, 1529, 1558
BssMI	GATC	4 cut(s)	30, 289, 681, 826
BssNI	GRCGYC	1 cut(s)	1459
BssT1I	CCWWGG	2 cut(s)	21, 1088
Bst2UI	CCWGG	2 cut(s)	668, 1560
Bst4CI	ACNGT	3 cut(s)	220, 229, 704
BstACI	GRCGYC	1 cut(s)	1459
BstC8I	GCNNGC	3 cut(s)	780, 804, 1343
BstDEI	CTNAG	4 cut(s)	309, 867, 1071, 1209
BstDSI	CCRYGG	2 cut(s)	1088, 1529
BstEII	GGTNACC	1 cut(s)	378
BstF5I	GGATG	4 cut(s)	463, 1035, 1139, 1246
BstH2I	RGCGCY	1 cut(s)	1342
BstHHI	GCGC	2 cut(s)	641, 1341
BstKTI	GATC	4 cut(s)	33, 292, 684, 829
BstMAI	GTCTC	2 cut(s)	112, 1409
BstMBI	GATC	4 cut(s)	30, 289, 681, 826
BstMWI	GCNNNNNNNGC	8 cut(s)	799, 951, 1294, 1336, 1342, 1345, 1354, 1357
BstNI	CCWGG	2 cut(s)	668, 1560
BstNSI	RCATGY	2 cut(s)	404, 778
BstPI	GGTNACC	1 cut(s)	378
BstSCI	CCNGG	2 cut(s)	666, 1558
BstSFI	CTRYAG	3 cut(s)	219, 1470, 1485
BstX2I	RGATCY	2 cut(s)	289, 681
BstXI	CCANNNNNNTGG	1 cut(s)	719
BstYI	RGATCY	2 cut(s)	289, 681
BsuI	GTATCC	1 cut(s)	286
BsuRI	GGCC	4 cut(s)	186, 555, 898, 1093
BtgI	CCRYGG	2 cut(s)	1088, 1529
BtsCI	GGATG	4 cut(s)	463, 1035, 1139, 1246
BtsI	GCAGTG	2 cut(s)	750, 1417
BtsIMutI	CAGTG	4 cut(s)	146, 750, 978, 1417
Cac8I	GCNNGC	3 cut(s)	780, 804, 1343
CfoI	GCGC	2 cut(s)	641, 1341
Cfr13I	GGNCC	3 cut(s)	553, 578, 897
CseI	GACGC	1 cut(s)	782
Csp6I	GTAC	1 cut(s)	871
CviAII	CATG	6 cut(s)	401, 569, 716, 775, 1089, 1236
CviQI	GTAC	1 cut(s)	871
DdeI	CTNAG	4 cut(s)	309, 867, 1071, 1209
DpnI	GATC	4 cut(s)	32, 291, 683, 828
DpnII	GATC	4 cut(s)	30, 289, 681, 826
EaeI	YGGCCR	1 cut(s)	184
Eco130I	CCWWGG	2 cut(s)	21, 1088
Eco47I	GGWCC	1 cut(s)	578
Eco57I	CTGAAG	1 cut(s)	405
Eco88I	CYCGRG	1 cut(s)	394
Eco91I	GGTNACC	1 cut(s)	378
EcoO109I	RGGNCCY	1 cut(s)	897
EcoO65I	GGTNACC	1 cut(s)	378
EcoRII	CCWGG	2 cut(s)	666, 1558
EcoT14I	CCWWGG	2 cut(s)	21, 1088
EcoT22I	ATGCAT	1 cut(s)	1326
ErhI	CCWWGG	2 cut(s)	21, 1088
FaeI	CATG	6 cut(s)	404, 572, 719, 778, 1092, 1239
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	6 cut(s)	400, 568, 715, 774, 1088, 1235
FauI	CCCGC	1 cut(s)	1208
FbaI	TGATCA	1 cut(s)	826
FblI	GTMKAC	1 cut(s)	1488
FokI	GGATG	4 cut(s)	470, 1022, 1126, 1253
FspBI	CTAG	1 cut(s)	603
GlaI	GCGC	2 cut(s)	640, 1340
GsaI	CCCAGC	2 cut(s)	378, 525
GsuI	CTGGAG	1 cut(s)	1211
HaeII	RGCGCY	1 cut(s)	1342
HaeIII	GGCC	4 cut(s)	186, 555, 898, 1093
HgaI	GACGC	1 cut(s)	782
HhaI	GCGC	2 cut(s)	641, 1341
Hin1I	GRCGYC	1 cut(s)	1459
Hin1II	CATG	6 cut(s)	404, 572, 719, 778, 1092, 1239
Hin6I	GCGC	2 cut(s)	639, 1339
HinP1I	GCGC	2 cut(s)	639, 1339
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	6 cut(s)	40, 305, 865, 970, 1048, 1114
HphI	GGTGA	4 cut(s)	208, 372, 1007, 1256
Hpy166II	GTNNAC	3 cut(s)	1017, 1457, 1489
Hpy188I	TCNGA	5 cut(s)	30, 310, 1047, 1074, 1498
Hpy188III	TCNNGA	5 cut(s)	505, 677, 1118, 1445, 1463
Hpy8I	GTNNAC	3 cut(s)	1017, 1457, 1489
Hpy99I	CGWCG	2 cut(s)	798, 1464
HpyAV	CCTTC	2 cut(s)	380, 405
HpyCH4III	ACNGT	3 cut(s)	220, 229, 704
HpyCH4IV	ACGT	1 cut(s)	1459
HpyF10VI	GCNNNNNNNGC	8 cut(s)	799, 951, 1294, 1336, 1342, 1345, 1354, 1357
HpyF3I	CTNAG	4 cut(s)	309, 867, 1071, 1209
HpySE526I	ACGT	1 cut(s)	1459
Hsp92I	GRCGYC	1 cut(s)	1459
Hsp92II	CATG	6 cut(s)	404, 572, 719, 778, 1092, 1239
HspAI	GCGC	2 cut(s)	639, 1339
Ksp22I	TGATCA	1 cut(s)	826
Kzo9I	GATC	4 cut(s)	30, 289, 681, 826
LmnI	GCTCC	3 cut(s)	1407, 1436, 1533
LweI	GCATC	9 cut(s)	508, 580, 866, 867, 1275, 1281, 1311, 1323, 1369
MaeI	CTAG	1 cut(s)	603
MaeII	ACGT	1 cut(s)	1459
MaeIII	GTNAC	6 cut(s)	94, 144, 317, 378, 526, 770
MalI	GATC	4 cut(s)	32, 291, 683, 828
MbiI	CCGCTC	1 cut(s)	1439
MboI	GATC	4 cut(s)	30, 289, 681, 826
MboII	GAAGA	5 cut(s)	284, 520, 599, 976, 1038
MflI	RGATCY	2 cut(s)	289, 681
MluCI	AATT	7 cut(s)	90, 200, 672, 906, 999, 1231, 1537
MlyI	GAGTC	1 cut(s)	859
MmeI	TCCRAC	1 cut(s)	709
Mph1103I	ATGCAT	1 cut(s)	1326
MseI	TTAA	2 cut(s)	132, 905
MslI	CAYNNNNRTG	4 cut(s)	405, 573, 696, 717
MspA1I	CMGCKG	2 cut(s)	176, 758
MspR9I	CCNGG	2 cut(s)	668, 1560
Mva1269I	GAATGC	1 cut(s)	761
MvaI	CCWGG	2 cut(s)	668, 1560
MwoI	GCNNNNNNNGC	8 cut(s)	799, 951, 1294, 1336, 1342, 1345, 1354, 1357
NcoI	CCATGG	1 cut(s)	1088
NdeII	GATC	4 cut(s)	30, 289, 681, 826
NlaIII	CATG	6 cut(s)	404, 572, 719, 778, 1092, 1239
NlaIV	GGNNCC	2 cut(s)	554, 899
NmeAIII	GCCGAG	1 cut(s)	581
NmuCI	GTSAC	2 cut(s)	144, 378
NsiI	ATGCAT	1 cut(s)	1326
NspI	RCATGY	2 cut(s)	404, 778
PctI	GAATGC	1 cut(s)	761
PfeI	GAWTC	5 cut(s)	40, 305, 970, 1048, 1114
PflMI	CCANNNNNTGG	1 cut(s)	941
PleI	GAGTC	1 cut(s)	859
PpsI	GAGTC	1 cut(s)	859
Psp6I	CCWGG	2 cut(s)	666, 1558
PspEI	GGTNACC	1 cut(s)	378
PspFI	CCCAGC	2 cut(s)	374, 521
PspGI	CCWGG	2 cut(s)	666, 1558
PspN4I	GGNNCC	2 cut(s)	554, 899
PspPI	GGNCC	3 cut(s)	553, 578, 897
PsuI	RGATCY	2 cut(s)	289, 681
PvuII	CAGCTG	1 cut(s)	758
RsaI	GTAC	1 cut(s)	872
RsaNI	GTAC	1 cut(s)	871
RseI	CAYNNNNRTG	4 cut(s)	405, 573, 696, 717
SaqAI	TTAA	2 cut(s)	132, 905
Sau3AI	GATC	4 cut(s)	30, 289, 681, 826
Sau96I	GGNCC	3 cut(s)	553, 578, 897
SchI	GAGTC	1 cut(s)	859
ScrFI	CCNGG	2 cut(s)	668, 1560
SfaNI	GCATC	9 cut(s)	508, 580, 866, 867, 1275, 1281, 1311, 1323, 1369
SfcI	CTRYAG	3 cut(s)	219, 1470, 1485
SinI	GGWCC	1 cut(s)	578
SmiMI	CAYNNNNRTG	4 cut(s)	405, 573, 696, 717
Sse9I	AATT	7 cut(s)	90, 200, 672, 906, 999, 1231, 1537
SsiI	CCGC	4 cut(s)	159, 176, 1201, 1439
SspI	AATATT	1 cut(s)	810
SspMI	CTAG	1 cut(s)	603
StyD4I	CCNGG	2 cut(s)	666, 1558
StyI	CCWWGG	2 cut(s)	21, 1088
TaaI	ACNGT	3 cut(s)	220, 229, 704
TaiI	ACGT	1 cut(s)	1462
TaqI	TCGA	4 cut(s)	234, 796, 1219, 1525
TasI	AATT	7 cut(s)	90, 200, 672, 906, 999, 1231, 1537
TfiI	GAWTC	5 cut(s)	40, 305, 970, 1048, 1114
Tru1I	TTAA	2 cut(s)	132, 905
Tru9I	TTAA	2 cut(s)	132, 905
TscAI	CASTG	4 cut(s)	153, 750, 985, 1417
TseFI	GTSAC	2 cut(s)	144, 378
Tsp45I	GTSAC	2 cut(s)	144, 378
TspDTI	ATGAA	6 cut(s)	48, 446, 506, 804, 936, 1224
TspGWI	ACGGA	1 cut(s)	1546
TspRI	CASTG	4 cut(s)	153, 750, 985, 1417
Van91I	CCANNNNNTGG	1 cut(s)	941
VpaK11BI	GGWCC	1 cut(s)	578
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	2 cut(s)	404, 778
XmiI	GTMKAC	1 cut(s)	1488
XspI	CTAG	1 cut(s)	603
ZraI	GACGTC	1 cut(s)	1460
Zsp2I	ATGCAT	1 cut(s)	1326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.