Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003391

Physical Location & Seq

Genomic Coordinates Reverse (-)

25676206 .. 25679664

Gene Structure 3459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G281800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1599 bp

ATGGCGAGGAACTGGGTTGCACTGGTTCTGATTTGTGTGGTTCTCTCCGGGGATTTTTCATCCGCATCAGCCAGTCCTCCTGCAAAAATTGTAACTGGGGTTGTCTCCAATGTGGTCTCTGCTCTTGTCAAATGGCTCTGGTCACTGAAATCCACCACCAAAACCGGCACAGCTGTTTCTGGCCGTTCGATGGTGAAATTTGAGGGTGACTATACGGTGGATACGGTGTTTGATGGAAGTAAGCTTGGAATTGAACCACACACAGTTATAGTATCCCCAAGTGGAGACCTTCTGGTGTTGGATTCTGAAAATAGCAACATCTACAAGATCTCAACGCCATTGTCTCGGTATGGCCGACCCAAGCTGATTGCTGGATCACCTGAAGGGTACTCTGGGCATGTGGATGGGAGGCCAAGAGAAGCAAGAATGAACCACCCCAAAGGGCTGACTGTGGATGACAGAGGAAATATTTATATTGCAGACACAATGAATATGGTTATCAGGAAGATAAGTGATGCCGGGGTCACGACAATTGCTGGTGGAAAATGGGGCAGAGGAGGTGGTCATGTTGATGGTCCAAGTGAAGATGCAAAGTTTTCTAGTGATTTTGACGTGGTATACATTGGCAGTAGCTGCTCTCTTTTGGTTATAGACAGAGGAAACCAGGCCATTCGAGAGATCCAACTCCACTATGATGACTGTACTGACCGCTATGATGGAAGTTTCCATTTAGGAATAGCAATGCTGATTGCAGCTGCCTTCTTTGGTTACATGCTGGCATTGCTGCAGCGCAGGGTACAAGCAATGTTTTCTTCAGATGAGGATCGAAGAACTCCTATGAAGAGAGATGCACCAATGGCACCATATCAGAGGCCTCCTAAATCTGTCAGGCCCCCTTTAATTCCACCTGAAGATGAACCAGAAAAACTAGATGATGGTTTCTTTGGTTCACTAGGGAAGATTGCCGTTAACACTGGCTCATCTGTGGCTGAAATCTTGGGGGGGTTGTTTATGGGATTTAGAAGAAAGCCCATGCATTATCAGATTCAGCAGCAGTATCATCAAGCTAACAAACATTCAAATGCATGGCCTATGCAAGAGAGCTTTGTGATTCCCGATGAAGATGAGCCTCCGTCAATAGAAACCAGAAGCCCAACCCCAAAGAAAACCTACCCCTTCATGACCAAAGACCTGGAGAAGTCCCACCATTTGAAGCAAAGTCAAGCGTACTATAATTCATGGGATGGTGAATATCACCAACAGCAACAACATCAGATGCAGATGCAGATGCAGCAGCAGCAACAGCATCAGATGCAGATGCAGATGCAGCAACAGGAACAACATCAGATGCAGATGCAGCAGCAGCAGCAGCAGCAACACCGACAGCAGCAGCATCACAGGCAATACTCATCAAGCCCGAAAACATTCTACGAGAAGAGCAGCGAGACAAATGAGATTGTGTTTGGGGCAGTTCAAGAACAGGATGGACGACGTGAAGCCGTGGTGATAAAGGCTGTAGACTATGGAGATTCGAGATACAATCACCACAACATTCGACCGCGCTTCAACTATATGGGTTATAATTCCTCTGGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

533

Amino Acids

60.05

Weight (kDa)

7.06

Isoelectric Point (pI)

51.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70280 AT1G70280
fragaria_vesca	FvH4_4g34810 FvH4_4g34810 FvH4_6g50490 FvH4_6g50490
malus_domestica	MD09G1036000.v1.1 MD13G1089500.v1.1 MD16G1089700.v1.1 MD17G1037600.v1.1
prunus_persica	Prupe.1G256300_v2.0.a1 Prupe.3G281800_v2.0.a1 Prupe.3G281800_v2.0.a1
pyrus_communis	pycom111g02890 pycom13g07800 pycom16g07680 pycom17g03370
rosa_chinensis	RchiOBHm_Chr2g0170891 RchiOBHm_Chr4g0444151
rosa_laevigata	RLG00000021991
rosa_multiflora	Rmu_sc0009938.1_g000002 Rmu_sc0012638.1_g000012
rosa_roxburghii	Rroxscaffold_2G00080990 Rroxscaffold_5G00384740
rosa_rugosa	Rorug02G0552200 Rorug04G0350500
rosa_samantha	Rh2AG624900 Rh2BG635600 Rh2CG604300 Rh2DG647200 Rh4AG411100 Rh4BG422500 Rh4CG436900 Rh4DG417800
rosa_wichuraiana	Rw2G051760 Rw4G035320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1581
AccB1I	GGYRCC	1 cut(s)	859
AccI	GTMKAC	2 cut(s)	618, 1518
AccII	CGCG	1 cut(s)	1561
AciI	CCGC	3 cut(s)	63, 709, 1559
AclWI	GGATC	3 cut(s)	382, 673, 831
AcoI	YGGCCR	2 cut(s)	181, 352
AcsI	RAATTY	1 cut(s)	197
AcuI	CTGAAG	3 cut(s)	402, 798, 930
AfaI	GTAC	4 cut(s)	389, 703, 798, 1229
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	5 cut(s)	254, 1080, 1213, 1475, 1567
AjiI	CACGTC	2 cut(s)	613, 1493
AjnI	CCWGG	2 cut(s)	663, 1191
AluBI	AGCT	7 cut(s)	173, 244, 364, 633, 755, 1067, 1104
AluI	AGCT	7 cut(s)	173, 244, 364, 633, 755, 1067, 1104
Alw26I	GTCTC	5 cut(s)	109, 121, 279, 348, 1439
AlwI	GGATC	3 cut(s)	382, 673, 831
AlwNI	CAGNNNCTG	1 cut(s)	633
AoxI	GGCC	7 cut(s)	181, 352, 410, 666, 872, 890, 1088
ApoI	RAATTY	1 cut(s)	197
Asp700I	GAANNNNTTC	1 cut(s)	1424
AspLEI	GCGC	2 cut(s)	792, 1563
AspS9I	GGNCC	2 cut(s)	575, 891
AsuC2I	CCSGG	2 cut(s)	49, 520
AsuHPI	GGTGA	7 cut(s)	205, 218, 369, 1247, 1259, 1516, 1535
AvaII	GGWCC	1 cut(s)	575
BanI	GGYRCC	1 cut(s)	859
BccI	CCATC	8 cut(s)	184, 227, 398, 566, 710, 929, 1238, 1478
BceAI	ACGGC	3 cut(s)	168, 950, 1484
BciT130I	CCWGG	2 cut(s)	665, 1193
BciVI	GTATCC	2 cut(s)	214, 283
BcnI	CCSGG	2 cut(s)	49, 520
BcoDI	GTCTC	5 cut(s)	109, 121, 279, 348, 1439
BfaI	CTAG	3 cut(s)	600, 929, 953
BfmI	CTRYAG	2 cut(s)	785, 1515
BfuI	GTATCC	2 cut(s)	214, 283
BglII	AGATCT	1 cut(s)	327
Bme1390I	CCNGG	4 cut(s)	49, 520, 665, 1193
Bme18I	GGWCC	1 cut(s)	575
BmgBI	CACGTC	2 cut(s)	613, 1493
BmgT120I	GGNCC	2 cut(s)	575, 891
BmiI	GGNNCC	2 cut(s)	861, 893
BmrFI	CCNGG	4 cut(s)	49, 520, 665, 1193
BmrI	ACTGGG	2 cut(s)	22, 105
BmuI	ACTGGG	2 cut(s)	22, 105
BpmI	CTGGAG	1 cut(s)	1214
BpuMI	CCSGG	2 cut(s)	49, 520
BsaBI	GATNNNNATC	1 cut(s)	822
BsaI	GGTCTC	2 cut(s)	121, 279
BsaJI	CCNNGG	3 cut(s)	48, 519, 1500
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse118I	RCCGGY	1 cut(s)	164
Bse1I	ACTGG	5 cut(s)	17, 27, 72, 100, 979
Bse3DI	GCAATG	3 cut(s)	747, 779, 810
Bse8I	GATNNNNATC	1 cut(s)	822
BseBI	CCWGG	2 cut(s)	665, 1193
BseDI	CCNNGG	3 cut(s)	48, 519, 1500
BseGI	GGATG	5 cut(s)	59, 409, 460, 1249, 1489
BseJI	GATNNNNATC	1 cut(s)	822
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMI	GCAATG	3 cut(s)	747, 779, 810
BseNI	ACTGG	5 cut(s)	17, 27, 72, 100, 979
BseRI	GAGGAG	1 cut(s)	570
Bsh1236I	CGCG	1 cut(s)	1561
Bsh1285I	CGRYCG	1 cut(s)	1559
BshFI	GGCC	7 cut(s)	183, 354, 412, 668, 874, 892, 1090
BshNI	GGYRCC	1 cut(s)	859
BsiEI	CGRYCG	1 cut(s)	1559
BsiSI	CCGG	3 cut(s)	48, 165, 519
BslFI	GGGAC	1 cut(s)	1186
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	5 cut(s)	109, 121, 279, 348, 1439
BsmFI	GGGAC	1 cut(s)	1186
BsnI	GGCC	7 cut(s)	183, 354, 412, 668, 874, 892, 1090
Bso31I	GGTCTC	2 cut(s)	121, 279
Bsp143I	GATC	4 cut(s)	327, 374, 678, 823
BspACI	CCGC	3 cut(s)	63, 709, 1559
BspANI	GGCC	7 cut(s)	183, 354, 412, 668, 874, 892, 1090
BspFNI	CGCG	1 cut(s)	1561
BspHI	TCATGA	1 cut(s)	1179
BspLI	GGNNCC	2 cut(s)	861, 893
BspMAI	CTGCAG	1 cut(s)	789
BspPI	GGATC	3 cut(s)	382, 673, 831
BspQI	GCTCTTC	1 cut(s)	1430
BspT107I	GGYRCC	1 cut(s)	859
BspTNI	GGTCTC	2 cut(s)	121, 279
BsrDI	GCAATG	3 cut(s)	747, 779, 810
BsrFI	RCCGGY	1 cut(s)	164
BsrI	ACTGG	5 cut(s)	17, 27, 72, 100, 979
BssAI	RCCGGY	1 cut(s)	164
BssECI	CCNNGG	3 cut(s)	48, 519, 1500
BssMI	GATC	4 cut(s)	327, 374, 678, 823
BssNAI	GTATAC	1 cut(s)	619
Bst1107I	GTATAC	1 cut(s)	619
Bst2UI	CCWGG	2 cut(s)	665, 1193
Bst4CI	ACNGT	5 cut(s)	217, 226, 265, 451, 701
Bst6I	CTCTTC	2 cut(s)	836, 1430
BstAPI	GCANNNNNTGC	2 cut(s)	633, 1312
BstC8I	GCNNGC	1 cut(s)	777
BstDSI	CCRYGG	1 cut(s)	1500
BstF5I	GGATG	5 cut(s)	59, 409, 460, 1249, 1489
BstFNI	CGCG	1 cut(s)	1561
BstHHI	GCGC	2 cut(s)	792, 1563
BstKTI	GATC	4 cut(s)	330, 377, 681, 826
BstMAI	GTCTC	5 cut(s)	109, 121, 279, 348, 1439
BstMBI	GATC	4 cut(s)	327, 374, 678, 823
BstMCI	CGRYCG	1 cut(s)	1559
BstNI	CCWGG	2 cut(s)	665, 1193
BstNSI	RCATGY	2 cut(s)	401, 775
BstSCI	CCNGG	4 cut(s)	47, 518, 663, 1191
BstSFI	CTRYAG	2 cut(s)	785, 1515
BstUI	CGCG	1 cut(s)	1561
BstX2I	RGATCY	2 cut(s)	327, 678
BstXI	CCANNNNNNTGG	1 cut(s)	1192
BstYI	RGATCY	2 cut(s)	327, 678
BstZ17I	GTATAC	1 cut(s)	619
BsuI	GTATCC	2 cut(s)	214, 283
BsuRI	GGCC	7 cut(s)	183, 354, 412, 668, 874, 892, 1090
BtgI	CCRYGG	1 cut(s)	1500
BtrI	CACGTC	2 cut(s)	613, 1493
BtsCI	GGATG	5 cut(s)	59, 409, 460, 1249, 1489
BtsIMutI	CAGTG	3 cut(s)	20, 143, 972
Cac8I	GCNNGC	1 cut(s)	777
CaiI	CAGNNNCTG	1 cut(s)	633
CciI	TCATGA	1 cut(s)	1179
CfoI	GCGC	2 cut(s)	792, 1563
Cfr10I	RCCGGY	1 cut(s)	164
Cfr13I	GGNCC	2 cut(s)	575, 891
Csp6I	GTAC	4 cut(s)	388, 702, 797, 1228
CviAII	CATG	7 cut(s)	398, 566, 772, 1033, 1086, 1180, 1239
CviQI	GTAC	4 cut(s)	388, 702, 797, 1228
DpnI	GATC	4 cut(s)	329, 376, 680, 825
DpnII	GATC	4 cut(s)	327, 374, 678, 823
EaeI	YGGCCR	2 cut(s)	181, 352
Eam1104I	CTCTTC	2 cut(s)	836, 1430
EarI	CTCTTC	2 cut(s)	836, 1430
Eco147I	AGGCCT	1 cut(s)	874
Eco31I	GGTCTC	2 cut(s)	121, 279
Eco47I	GGWCC	1 cut(s)	575
Eco57I	CTGAAG	3 cut(s)	402, 798, 930
EcoO109I	RGGNCCY	1 cut(s)	891
EcoRII	CCWGG	2 cut(s)	663, 1191
EcoT22I	ATGCAT	2 cut(s)	1038, 1087
FaeI	CATG	7 cut(s)	401, 569, 775, 1036, 1089, 1183, 1242
FaqI	GGGAC	1 cut(s)	1186
FatI	CATG	7 cut(s)	397, 565, 771, 1032, 1085, 1179, 1238
FblI	GTMKAC	2 cut(s)	618, 1518
FokI	GGATG	5 cut(s)	46, 416, 467, 1256, 1496
FspBI	CTAG	3 cut(s)	600, 929, 953
GlaI	GCGC	2 cut(s)	791, 1562
GsuI	CTGGAG	1 cut(s)	1214
HaeIII	GGCC	7 cut(s)	183, 354, 412, 668, 874, 892, 1090
HapII	CCGG	3 cut(s)	48, 165, 519
HhaI	GCGC	2 cut(s)	792, 1563
Hin1II	CATG	7 cut(s)	401, 569, 775, 1036, 1089, 1183, 1242
Hin6I	GCGC	2 cut(s)	790, 1561
HinP1I	GCGC	2 cut(s)	790, 1561
HincII	GTYRAC	1 cut(s)	970
HindII	GTYRAC	1 cut(s)	970
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	4 cut(s)	302, 1045, 1111, 1529
HpaI	GTTAAC	1 cut(s)	970
HpaII	CCGG	3 cut(s)	48, 165, 519
HphI	GGTGA	7 cut(s)	205, 218, 369, 1247, 1259, 1516, 1535
Hpy166II	GTNNAC	4 cut(s)	619, 950, 970, 1519
Hpy188I	TCNGA	8 cut(s)	30, 307, 817, 870, 1044, 1275, 1311, 1347
Hpy188III	TCNNGA	7 cut(s)	502, 526, 674, 1115, 1180, 1475, 1533
Hpy8I	GTNNAC	4 cut(s)	619, 950, 970, 1519
Hpy99I	CGWCG	1 cut(s)	1494
HpyAV	CCTTC	4 cut(s)	299, 377, 769, 1186
HpyCH4III	ACNGT	5 cut(s)	217, 226, 265, 451, 701
HpyCH4IV	ACGT	2 cut(s)	612, 1492
HpySE526I	ACGT	2 cut(s)	612, 1492
Hsp92II	CATG	7 cut(s)	401, 569, 775, 1036, 1089, 1183, 1242
HspAI	GCGC	2 cut(s)	790, 1561
KspAI	GTTAAC	1 cut(s)	970
Kzo9I	GATC	4 cut(s)	327, 374, 678, 823
LguI	GCTCTTC	1 cut(s)	1430
MaeI	CTAG	3 cut(s)	600, 929, 953
MaeII	ACGT	2 cut(s)	612, 1492
MaeIII	GTNAC	5 cut(s)	91, 141, 206, 523, 767
MalI	GATC	4 cut(s)	329, 376, 680, 825
MboI	GATC	4 cut(s)	327, 374, 678, 823
MfeI	CAATTG	1 cut(s)	531
MflI	RGATCY	2 cut(s)	327, 678
MluCI	AATT	7 cut(s)	87, 197, 249, 531, 900, 1234, 1582
MmeI	TCCRAC	2 cut(s)	279, 706
Mph1103I	ATGCAT	2 cut(s)	1038, 1087
MroXI	GAANNNNTTC	1 cut(s)	1424
MseI	TTAA	2 cut(s)	899, 969
MslI	CAYNNNNRTG	4 cut(s)	402, 570, 693, 1080
MspA1I	CMGCKG	2 cut(s)	173, 755
MspI	CCGG	3 cut(s)	48, 165, 519
MspR9I	CCNGG	4 cut(s)	49, 520, 665, 1193
MunI	CAATTG	1 cut(s)	531
MvaI	CCWGG	2 cut(s)	665, 1193
MvnI	CGCG	1 cut(s)	1561
NciI	CCSGG	2 cut(s)	49, 520
NdeII	GATC	4 cut(s)	327, 374, 678, 823
NlaIII	CATG	7 cut(s)	401, 569, 775, 1036, 1089, 1183, 1242
NlaIV	GGNNCC	2 cut(s)	861, 893
NmuCI	GTSAC	3 cut(s)	141, 206, 523
NsiI	ATGCAT	2 cut(s)	1038, 1087
NspI	RCATGY	2 cut(s)	401, 775
PagI	TCATGA	1 cut(s)	1179
PceI	AGGCCT	1 cut(s)	874
PciSI	GCTCTTC	1 cut(s)	1430
PcsI	WCGNNNNNNNCGW	1 cut(s)	352
PdmI	GAANNNNTTC	1 cut(s)	1424
PfeI	GAWTC	4 cut(s)	302, 1045, 1111, 1529
PsiI	TTATAA	1 cut(s)	1581
Psp6I	CCWGG	2 cut(s)	663, 1191
PspGI	CCWGG	2 cut(s)	663, 1191
PspN4I	GGNNCC	2 cut(s)	861, 893
PspPI	GGNCC	2 cut(s)	575, 891
PstI	CTGCAG	1 cut(s)	789
PstNI	CAGNNNCTG	1 cut(s)	633
PsuI	RGATCY	2 cut(s)	327, 678
PvuII	CAGCTG	2 cut(s)	173, 755
RsaI	GTAC	4 cut(s)	389, 703, 798, 1229
RsaNI	GTAC	4 cut(s)	388, 702, 797, 1228
RseI	CAYNNNNRTG	4 cut(s)	402, 570, 693, 1080
SapI	GCTCTTC	1 cut(s)	1430
SaqAI	TTAA	2 cut(s)	899, 969
Sau3AI	GATC	4 cut(s)	327, 374, 678, 823
Sau96I	GGNCC	2 cut(s)	575, 891
ScrFI	CCNGG	4 cut(s)	49, 520, 665, 1193
SfcI	CTRYAG	2 cut(s)	785, 1515
SinI	GGWCC	1 cut(s)	575
SmiMI	CAYNNNNRTG	4 cut(s)	402, 570, 693, 1080
Sse9I	AATT	7 cut(s)	87, 197, 249, 531, 900, 1234, 1582
SseBI	AGGCCT	1 cut(s)	874
SsiI	CCGC	3 cut(s)	63, 709, 1559
SspI	AATATT	1 cut(s)	469
SspMI	CTAG	3 cut(s)	600, 929, 953
StuI	AGGCCT	1 cut(s)	874
StyD4I	CCNGG	4 cut(s)	47, 518, 663, 1191
TaaI	ACNGT	5 cut(s)	217, 226, 265, 451, 701
TaiI	ACGT	2 cut(s)	615, 1495
TaqI	TCGA	5 cut(s)	188, 673, 826, 1532, 1555
TasI	AATT	7 cut(s)	87, 197, 249, 531, 900, 1234, 1582
TatI	WGTACW	1 cut(s)	701
TfiI	GAWTC	4 cut(s)	302, 1045, 1111, 1529
Tru1I	TTAA	2 cut(s)	899, 969
Tru9I	TTAA	2 cut(s)	899, 969
TscAI	CASTG	3 cut(s)	27, 150, 979
TseFI	GTSAC	3 cut(s)	141, 206, 523
Tsp45I	GTSAC	3 cut(s)	141, 206, 523
TspDTI	ATGAA	8 cut(s)	48, 443, 503, 854, 930, 1134, 1168, 1227
TspGWI	ACGGA	1 cut(s)	1122
TspRI	CASTG	3 cut(s)	27, 150, 979
VpaK11BI	GGWCC	1 cut(s)	575
XapI	RAATTY	1 cut(s)	197
XceI	RCATGY	2 cut(s)	401, 775
XmiI	GTMKAC	2 cut(s)	618, 1518
XmnI	GAANNNNTTC	1 cut(s)	1424
XspI	CTAG	3 cut(s)	600, 929, 953
Zsp2I	ATGCAT	2 cut(s)	1038, 1087

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.