Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0003391

Physical Location & Seq

Genomic Coordinates Reverse (-)

6209291 .. 6213108

Gene Structure 3818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1089700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGTTTCAGCTTTTTGGTGTTGTGGGCTCCACTGGAAGAACAGGAGTGATGGGTCGGAGTTTCTTGGCGGCGACTCTCATCGTTTTGGTTCTGTTTGGCGGCGTATCGTCCGCTGCCCCTACTGCCCCAGCTAAGATTGTTGGTGGGTTTTTCTCAAATGCTGCGTCTGCTTTCATGAAACGGGTGTGGTCACTCAAAGCAACTACCAAAACAGCGGTTTCGGGCCGTCCGGTGATGAAGTTTGAGAGTGGGTTTAACGTGGAGACGGTGTTTGATGGAAGCAAGCTTGGTATTGAGCCTTACACTGTGGAGGTTTTGCCAAGTGGGGAGCTTCTGATTTTGGATTCTGCTAATAGCAACCTTTATAGGATCTCTTCCTCTCTGTCTCTGTACAGCAGACCAAAGCTGGTTGCAGGATCCTCTGATGGAAACCCGGGACATGTAGATGGAAGGACCAGAGAGGCAAGAATGAACCACCCAAGGGGGCTTACAGTTGATGACAGTGGAAACATTTATGTTGCAGACACAATGAATATGGCAATCAGGAAGATAAGCAATGCCGGGGTTACAACAATAGCAGGAGGGAAATCGGGCCGTGGGGGAAGCCATGTGGATGGACCAAGTGAAGATGCAAAGTTTTCTGACGACTTTGATGTGGTTTACATTGGAAGCAGCTGCTCCTTGCTCGTCATAGACAGAGGAAATCGAGCAATCAGGGAGATCCAACTACATTTTGATGACTGTGCTTATCAATATGGAAGTGGTTTCCCCCTTGGGATTGCAATGCTTATTGGGGCTGGCTTCTTTGGTTATATGTTAGCATTGCTACAACGTAGAGTTGGTACAATTGTCTCTTCCCAAAATGATCAAGAACCAATGAAGACAAGCATTCCTCCAAGTTCATACCAGAAGCCTCTGACATCAGTCAGGCCACCTTTGATTCCTGAAGATGAGCAGGAGAAGCAAGAAGAAGGCTTCTTAGGATCTCTTGGGAATCTTTTGGTCAATGCCGGGGCATGTGGTATGGAAATTCTGGGGGCTATATTTCCAGGTTTCAGGAAAAAGCATCTGAACTACCAATACCAAAGTCAGCAACAGAAGCACCCAAATTCCTGGCCTGTGCAAGATAGCTATGTGATACCAGATGAGGATGAGCCACCTTCCATTGAAACCCGAACTTCCACCCCTCGCAAAACCTACCCATTCATGGCCAAGGATGCAGAAACAATCCATCAGTTGCGGCAAAGTCGAGTTTTCTATAATGGGTGGGATAATCTTCAGCAACAACAGCAGCAGCAGCAGCAGCAGCAAAAACAACCGCAACAGCACTATCATCGGTACCAATCATCAACCCCAAATACTTTCTACGAGCAGAGTAGTGAGAATACCACTGAGGTTGTGTTTGGTGCAGTTCAGGAGCAGGATGGGAAGGGTGAAGCTGTGGTCATAAAGCCTATTGACTACGGAGCTCCCATGTTCAATCACCACAGTTTCCGCTCCCGAATCAATCCGAACGGCTATACCCATGGCTATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

513

Amino Acids

56.25

Weight (kDa)

6.87

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70280 AT1G70280
fragaria_vesca	FvH4_4g34810 FvH4_4g34810 FvH4_6g50490 FvH4_6g50490
malus_domestica	MD09G1036000.v1.1 MD13G1089500.v1.1 MD16G1089700.v1.1 MD17G1037600.v1.1
prunus_persica	Prupe.1G256300_v2.0.a1 Prupe.3G281800_v2.0.a1 Prupe.3G281800_v2.0.a1
pyrus_communis	pycom111g02890 pycom13g07800 pycom16g07680 pycom17g03370
rosa_chinensis	RchiOBHm_Chr2g0170891 RchiOBHm_Chr4g0444151
rosa_laevigata	RLG00000021991
rosa_multiflora	Rmu_sc0009938.1_g000002 Rmu_sc0012638.1_g000012
rosa_roxburghii	Rroxscaffold_2G00080990 Rroxscaffold_5G00384740
rosa_rugosa	Rorug02G0552200 Rorug04G0350500
rosa_samantha	Rh2AG624900 Rh2BG635600 Rh2CG604300 Rh2DG647200 Rh4AG411100 Rh4BG422500 Rh4CG436900 Rh4DG417800
rosa_wichuraiana	Rw2G051760 Rw4G035320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1338
AccB1I	GGYRCC	1 cut(s)	1338
AccBSI	CCGCTC	1 cut(s)	1497
AciI	CCGC	7 cut(s)	68, 99, 111, 215, 1240, 1319, 1495
AclWI	GGATC	5 cut(s)	377, 411, 424, 715, 991
AcoI	YGGCCR	1 cut(s)	1209
AcsI	RAATTY	2 cut(s)	1029, 1108
AcuI	CTGAAG	2 cut(s)	966, 1262
AfaI	GTAC	3 cut(s)	392, 844, 1340
AfiI	CCNNNNNNNGG	2 cut(s)	481, 1207
AflIII	ACRYGT	1 cut(s)	439
AgsI	TTSAA	2 cut(s)	1169, 1480
AjnI	CCWGG	2 cut(s)	1048, 1112
AluBI	AGCT	9 cut(s)	10, 131, 286, 331, 406, 675, 1131, 1439, 1469
AluI	AGCT	9 cut(s)	10, 131, 286, 331, 406, 675, 1131, 1439, 1469
Alw21I	GWGCWC	1 cut(s)	1471
Alw26I	GTCTC	3 cut(s)	257, 390, 856
AlwI	GGATC	5 cut(s)	377, 411, 424, 715, 991
Ama87I	CYCGRG	1 cut(s)	433
AoxI	GGCC	5 cut(s)	223, 592, 929, 1115, 1209
ApoI	RAATTY	2 cut(s)	1029, 1108
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
Asp718I	GGTACC	1 cut(s)	1338
AspS9I	GGNCC	4 cut(s)	223, 453, 592, 617
AsuC2I	CCSGG	4 cut(s)	434, 435, 562, 1012
AsuHPI	GGTGA	3 cut(s)	244, 1445, 1475
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	2 cut(s)	453, 617
BaeI	ACNNNNGTAYC	2 cut(s)	834, 867
BalI	TGGCCA	1 cut(s)	1211
BamHI	GGATCC	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	1338
BanII	GRGCYC	2 cut(s)	29, 1471
BbsI	GAAGAC	1 cut(s)	887
Bbv12I	GWGCWC	1 cut(s)	1471
BccI	CCATC	7 cut(s)	43, 269, 419, 440, 608, 1239, 1418
BceAI	ACGGC	3 cut(s)	210, 579, 1531
BcgI	CGANNNNNNTGC	2 cut(s)	1316, 1350
BciT130I	CCWGG	2 cut(s)	1050, 1114
BclI	TGATCA	1 cut(s)	865
BcnI	CCSGG	4 cut(s)	434, 435, 562, 1012
BcoDI	GTCTC	3 cut(s)	257, 390, 856
Bme1390I	CCNGG	6 cut(s)	434, 435, 562, 1012, 1050, 1114
Bme18I	GGWCC	2 cut(s)	453, 617
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	4 cut(s)	223, 453, 592, 617
BmiI	GGNNCC	3 cut(s)	28, 418, 1340
BmrFI	CCNGG	6 cut(s)	434, 435, 562, 1012, 1050, 1114
BmsI	GCATC	3 cut(s)	619, 1075, 1207
BoxI	GACNNNNGTC	1 cut(s)	923
BpiI	GAAGAC	1 cut(s)	887
BpuMI	CCSGG	4 cut(s)	434, 435, 562, 1012
BsaJI	CCNNGG	8 cut(s)	433, 479, 561, 595, 772, 1011, 1212, 1525
BsaWI	WCCGGW	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	254, 284
Bsc4I	CCNNNNNNNGG	2 cut(s)	481, 1207
Bse1I	ACTGG	1 cut(s)	37
Bse3DI	GCAATG	3 cut(s)	562, 789, 821
BseBI	CCWGG	2 cut(s)	1050, 1114
BseDI	CCNNGG	8 cut(s)	433, 479, 561, 595, 772, 1011, 1212, 1525
BseGI	GGATG	4 cut(s)	619, 1156, 1222, 1429
BseLI	CCNNNNNNNGG	2 cut(s)	481, 1207
BseMI	GCAATG	3 cut(s)	562, 789, 821
BseMII	CTCAG	1 cut(s)	1383
BseNI	ACTGG	1 cut(s)	37
BseYI	CCCAGC	1 cut(s)	127
BsgI	GTGCAG	1 cut(s)	1428
BshFI	GGCC	5 cut(s)	225, 594, 931, 1117, 1211
BshNI	GGYRCC	1 cut(s)	1338
BsiHKAI	GWGCWC	1 cut(s)	1471
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	4 cut(s)	230, 434, 561, 1011
BslFI	GGGAC	1 cut(s)	450
BslI	CCNNNNNNNGG	2 cut(s)	481, 1207
BsmAI	GTCTC	3 cut(s)	257, 390, 856
BsmBI	CGTCTC	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	450
BsmI	GAATGC	1 cut(s)	888
BsnI	GGCC	5 cut(s)	225, 594, 931, 1117, 1211
BsoBI	CYCGRG	1 cut(s)	433
Bsp1286I	GDGCHC	2 cut(s)	29, 1471
Bsp1407I	TGTACA	1 cut(s)	390
Bsp143I	GATC	5 cut(s)	369, 416, 720, 865, 983
Bsp19I	CCATGG	1 cut(s)	1525
BspACI	CCGC	7 cut(s)	68, 99, 111, 215, 1240, 1319, 1495
BspANI	GGCC	5 cut(s)	225, 594, 931, 1117, 1211
BspCNI	CTCAG	1 cut(s)	1384
BspHI	TCATGA	1 cut(s)	174
BspLI	GGNNCC	3 cut(s)	28, 418, 1340
BspPI	GGATC	5 cut(s)	377, 411, 424, 715, 991
BspT107I	GGYRCC	1 cut(s)	1338
BsrBI	CCGCTC	1 cut(s)	1497
BsrDI	GCAATG	3 cut(s)	562, 789, 821
BsrGI	TGTACA	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	37
BssECI	CCNNGG	8 cut(s)	433, 479, 561, 595, 772, 1011, 1212, 1525
BssMI	GATC	5 cut(s)	369, 416, 720, 865, 983
BssT1I	CCWWGG	4 cut(s)	479, 772, 1212, 1525
Bst2UI	CCWGG	2 cut(s)	1050, 1114
Bst4CI	ACNGT	6 cut(s)	268, 307, 493, 503, 743, 1490
Bst6I	CTCTTC	2 cut(s)	379, 859
BstAUI	TGTACA	1 cut(s)	390
BstC8I	GCNNGC	2 cut(s)	284, 799
BstDEI	CTNAG	3 cut(s)	132, 979, 1392
BstDSI	CCRYGG	2 cut(s)	595, 1525
BstF5I	GGATG	4 cut(s)	619, 1156, 1222, 1429
BstKTI	GATC	5 cut(s)	372, 419, 723, 868, 986
BstMAI	GTCTC	3 cut(s)	257, 390, 856
BstMBI	GATC	5 cut(s)	369, 416, 720, 865, 983
BstNI	CCWGG	2 cut(s)	1050, 1114
BstNSI	RCATGY	2 cut(s)	443, 1020
BstPAI	GACNNNNGTC	1 cut(s)	923
BstSCI	CCNGG	6 cut(s)	432, 433, 560, 1010, 1048, 1112
BstV2I	GAAGAC	1 cut(s)	887
BstX2I	RGATCY	4 cut(s)	369, 416, 720, 983
BstXI	CCANNNNNNTGG	2 cut(s)	614, 1113
BstYI	RGATCY	4 cut(s)	369, 416, 720, 983
BsuRI	GGCC	5 cut(s)	225, 594, 931, 1117, 1211
BtgI	CCRYGG	2 cut(s)	595, 1525
BtsCI	GGATG	4 cut(s)	619, 1156, 1222, 1429
BtsIMutI	CAGTG	4 cut(s)	30, 303, 508, 1389
Cac8I	GCNNGC	2 cut(s)	284, 799
CciI	TCATGA	1 cut(s)	174
Cfr13I	GGNCC	4 cut(s)	223, 453, 592, 617
Cfr9I	CCCGGG	1 cut(s)	433
CseI	GACGC	1 cut(s)	153
Csp6I	GTAC	3 cut(s)	391, 843, 1339
CspCI	CAANNNNNGTGG	2 cut(s)	1378, 1413
CviAII	CATG	7 cut(s)	175, 440, 608, 1017, 1207, 1474, 1526
CviQI	GTAC	3 cut(s)	391, 843, 1339
DdeI	CTNAG	3 cut(s)	132, 979, 1392
DpnI	GATC	5 cut(s)	371, 418, 722, 867, 985
DpnII	GATC	5 cut(s)	369, 416, 720, 865, 983
EaeI	YGGCCR	1 cut(s)	1209
Eam1104I	CTCTTC	2 cut(s)	379, 859
EarI	CTCTTC	2 cut(s)	379, 859
Ecl136II	GAGCTC	1 cut(s)	1469
Eco130I	CCWWGG	4 cut(s)	479, 772, 1212, 1525
Eco24I	GRGCYC	2 cut(s)	29, 1471
Eco47I	GGWCC	2 cut(s)	453, 617
Eco53kI	GAGCTC	1 cut(s)	1469
Eco57I	CTGAAG	2 cut(s)	966, 1262
Eco88I	CYCGRG	1 cut(s)	433
EcoICRI	GAGCTC	1 cut(s)	1469
EcoRII	CCWGG	2 cut(s)	1048, 1112
EcoT14I	CCWWGG	4 cut(s)	479, 772, 1212, 1525
EcoT38I	GRGCYC	2 cut(s)	29, 1471
ErhI	CCWWGG	4 cut(s)	479, 772, 1212, 1525
Esp3I	CGTCTC	1 cut(s)	257
FaeI	CATG	7 cut(s)	178, 443, 611, 1020, 1210, 1477, 1529
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	7 cut(s)	174, 439, 607, 1016, 1206, 1473, 1525
FbaI	TGATCA	1 cut(s)	865
FokI	GGATG	4 cut(s)	626, 1163, 1229, 1436
FriOI	GRGCYC	2 cut(s)	29, 1471
GsaI	CCCAGC	1 cut(s)	131
HaeIII	GGCC	5 cut(s)	225, 594, 931, 1117, 1211
HapII	CCGG	4 cut(s)	230, 434, 561, 1011
HgaI	GACGC	1 cut(s)	153
Hin1II	CATG	7 cut(s)	178, 443, 611, 1020, 1210, 1477, 1529
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	5 cut(s)	73, 344, 940, 994, 1503
HpaII	CCGG	4 cut(s)	230, 434, 561, 1011
HphI	GGTGA	3 cut(s)	244, 1445, 1475
Hpy166II	GTNNAC	1 cut(s)	661
Hpy188I	TCNGA	7 cut(s)	57, 336, 424, 643, 918, 1071, 1512
Hpy188III	TCNNGA	7 cut(s)	175, 544, 869, 944, 1057, 1415, 1500
Hpy8I	GTNNAC	1 cut(s)	661
HpyAV	CCTTC	4 cut(s)	444, 965, 1170, 1423
HpyCH4III	ACNGT	6 cut(s)	268, 307, 493, 503, 743, 1490
HpyCH4IV	ACGT	2 cut(s)	258, 832
HpyCH4V	TGCA	7 cut(s)	413, 521, 632, 782, 1123, 1220, 1409
HpyF3I	CTNAG	3 cut(s)	132, 979, 1392
HpySE526I	ACGT	2 cut(s)	258, 832
Hsp92II	CATG	7 cut(s)	178, 443, 611, 1020, 1210, 1477, 1529
KpnI	GGTACC	1 cut(s)	1342
Ksp22I	TGATCA	1 cut(s)	865
Kzo9I	GATC	5 cut(s)	369, 416, 720, 865, 983
LmnI	GCTCC	7 cut(s)	32, 328, 683, 1417, 1466, 1474, 1502
LweI	GCATC	3 cut(s)	619, 1075, 1207
MaeII	ACGT	2 cut(s)	258, 832
MaeIII	GTNAC	2 cut(s)	189, 565
MalI	GATC	5 cut(s)	371, 418, 722, 867, 985
MbiI	CCGCTC	1 cut(s)	1497
MboI	GATC	5 cut(s)	369, 416, 720, 865, 983
MboII	GAAGA	9 cut(s)	48, 366, 559, 638, 846, 892, 959, 980, 1268
MfeI	CAATTG	1 cut(s)	846
MflI	RGATCY	4 cut(s)	369, 416, 720, 983
MhlI	GDGCHC	2 cut(s)	29, 1471
MlsI	TGGCCA	1 cut(s)	1211
MluCI	AATT	3 cut(s)	846, 1029, 1108
MluNI	TGGCCA	1 cut(s)	1211
MlyI	GAGTC	1 cut(s)	67
MmeI	TCCRAC	2 cut(s)	35, 748
Mox20I	TGGCCA	1 cut(s)	1211
MscI	TGGCCA	1 cut(s)	1211
MseI	TTAA	1 cut(s)	255
MslI	CAYNNNNRTG	3 cut(s)	444, 612, 735
Msp20I	TGGCCA	1 cut(s)	1211
MspA1I	CMGCKG	3 cut(s)	113, 215, 675
MspI	CCGG	4 cut(s)	230, 434, 561, 1011
MspR9I	CCNGG	6 cut(s)	434, 435, 562, 1012, 1050, 1114
MunI	CAATTG	1 cut(s)	846
Mva1269I	GAATGC	1 cut(s)	888
MvaI	CCWGG	2 cut(s)	1050, 1114
NciI	CCSGG	4 cut(s)	434, 435, 562, 1012
NcoI	CCATGG	1 cut(s)	1525
NdeII	GATC	5 cut(s)	369, 416, 720, 865, 983
NlaIII	CATG	7 cut(s)	178, 443, 611, 1020, 1210, 1477, 1529
NlaIV	GGNNCC	3 cut(s)	28, 418, 1340
NmuCI	GTSAC	1 cut(s)	189
NspI	RCATGY	2 cut(s)	443, 1020
PagI	TCATGA	1 cut(s)	174
PciI	ACATGT	1 cut(s)	439
PctI	GAATGC	1 cut(s)	888
PfeI	GAWTC	4 cut(s)	344, 940, 994, 1503
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PscI	ACATGT	1 cut(s)	439
PshAI	GACNNNNGTC	1 cut(s)	923
Psp124BI	GAGCTC	1 cut(s)	1471
Psp6I	CCWGG	2 cut(s)	1048, 1112
PspFI	CCCAGC	1 cut(s)	127
PspGI	CCWGG	2 cut(s)	1048, 1112
PspN4I	GGNNCC	3 cut(s)	28, 418, 1340
PspPI	GGNCC	4 cut(s)	223, 453, 592, 617
PsrI	GAACNNNNNNTAC	2 cut(s)	1064, 1096
PsuI	RGATCY	4 cut(s)	369, 416, 720, 983
PvuII	CAGCTG	1 cut(s)	675
RsaI	GTAC	3 cut(s)	392, 844, 1340
RsaNI	GTAC	3 cut(s)	391, 843, 1339
RseI	CAYNNNNRTG	3 cut(s)	444, 612, 735
SacI	GAGCTC	1 cut(s)	1471
SaqAI	TTAA	1 cut(s)	255
Sau3AI	GATC	5 cut(s)	369, 416, 720, 865, 983
Sau96I	GGNCC	4 cut(s)	223, 453, 592, 617
SchI	GAGTC	1 cut(s)	67
ScrFI	CCNGG	6 cut(s)	434, 435, 562, 1012, 1050, 1114
SduI	GDGCHC	2 cut(s)	29, 1471
SfaNI	GCATC	3 cut(s)	619, 1075, 1207
SinI	GGWCC	2 cut(s)	453, 617
SmaI	CCCGGG	1 cut(s)	435
SmiMI	CAYNNNNRTG	3 cut(s)	444, 612, 735
Sse9I	AATT	3 cut(s)	846, 1029, 1108
SsiI	CCGC	7 cut(s)	68, 99, 111, 215, 1240, 1319, 1495
SstI	GAGCTC	1 cut(s)	1471
StyD4I	CCNGG	6 cut(s)	432, 433, 560, 1010, 1048, 1112
StyI	CCWWGG	4 cut(s)	479, 772, 1212, 1525
TaaI	ACNGT	6 cut(s)	268, 307, 493, 503, 743, 1490
TaiI	ACGT	2 cut(s)	261, 835
TaqI	TCGA	2 cut(s)	706, 1249
TasI	AATT	3 cut(s)	846, 1029, 1108
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	3 cut(s)	71, 102, 1243
TfiI	GAWTC	4 cut(s)	344, 940, 994, 1503
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	4 cut(s)	37, 310, 508, 1396
TseFI	GTSAC	1 cut(s)	189
Tsp45I	GTSAC	1 cut(s)	189
TspDTI	ATGAA	8 cut(s)	163, 191, 251, 485, 545, 891, 893, 1195
TspGWI	ACGGA	1 cut(s)	1479
TspMI	CCCGGG	1 cut(s)	433
TspRI	CASTG	4 cut(s)	37, 310, 508, 1396
VpaK11BI	GGWCC	2 cut(s)	453, 617
XapI	RAATTY	2 cut(s)	1029, 1108
XceI	RCATGY	2 cut(s)	443, 1020
XmaI	CCCGGG	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.