Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003391

Physical Location & Seq

Genomic Coordinates Forward (+)

2223343 .. 2226937

Gene Structure 3595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1036000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1578 bp

ATGGTGAGGAATTGGGTTGCATTGCTTCTGGTTTTTCTGCTTCTCTCTGGGGATTTCTCTTCAGGAGCATCTGCCACACCTCCTGCAAAAATTGTAACTGGGGTTGTCTCCAATGTGGTTTCTGCTCTTGTCAAATGGCTCTGGTCGCTGAAATCCACCACAAAAACCAGTTCAGCTGTTTCTAGCCGTTCGATGATCAAATTTGAAGGTGGATATACCGTGGATACGGTGTTCGATGGAAGTAAGCTTGGAATTGAACCACATTCAGTTGAATTATCCCCAAATGGAGAGCTTCTGGTTTTGGATTCCGAAAATAGTAACATCTACAAGATCTCAATGCCATTGTCTCGTTATAGCCGACCCAAGTTGATTTCTGGATCACCTGAGGGATACTCAGGGCATGTGGACGGGAGGCCAAGAGATGCAAGAATGAACCACCCAAAAGGGCTGACTGTGGATGATAGAGGAAATATTTATATCGCAGACACAATGAATATGGCTATCAGGAAGATAACTGATGCCGGGGTTACGACTATTGCTGGTGGAAAATGGGGCAGAGGAGGTGGTCATGTTGATGGTCCAAGTGAAGATGCAAAGTTTTCTAGTGATTTTGATGTGATATACGTCGGTAGCAGCTGCTCTCTTTTGGTTATTGACAGAGGAAACCAGGCAATTCGGGAGATCCAACTCCACTATGATGACTGTAACGACCACTATGATGGAACTTTCGGTTTAGGAATAGCAATGCTGATTGCAGCTGCATTCTTTGGCTACATGCTGGCACTGCTGCAGCGTAGGGTGCAAGCAATGTTTTCGTCAAATGATACAAGTTACTTACAGGATCAAAGAACTATACATAGGGCTGCAACAGTGGCACCATATCAGAGGCCTCCTAAATCCGTCAGGCCCCCTTTAATTCCAAATGAAGATGAACCTGAGAAACTAGATGACGGCTTCTTTGGTTCACTAGGGAAGATCGTCCTCAACACTGGCTTGTCTGTGTCTGAAATCTTTGGGGGAATATTTACGGGCTTTAGAAGTAAGCCCCGACAATATCACATTCAGCAGCAGTATCACCAAGCTAATAAGCATTCAAATGCTTGGCCCACGCAAGACAGCTATGTGGTTCCAGACGAAGACGAGCCTCCATCATTAGAAACGAGATCCTCAACCCCAAATAAAACCTACCCATACATGACCAAAGACCTGGAGAAGCCTCGCCATTCGAAGCAAAGTCAAGCTTACTATAATTCATGGGAGGGCGAATATCAGCAACAGCAACAACTTCTGACACAGCTGCAGCAGCAGCAACAACTTCAGACGCAGCTGCAGCAGCAACAACAACTTCAGATGCAGCTGCAGCAGCAGCATCATCACAGGCATTACTCAACAAACCCGACTACATACTACGAGGAGAGCAGCGAGACAAACGAGATTGTGTTTGGGGCAGTCCAAGAACAGGATGGACGGCGTGAAGCTGTGGTGATAAAGGCAGTAGACTATGGAGATTCTAGATATAACCACCACAACATTCGACAGCGTTTCAATTATATGGATTATAATTCCTCTGGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

526

Amino Acids

59.0

Weight (kDa)

6.28

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70280 AT1G70280
fragaria_vesca	FvH4_4g34810 FvH4_4g34810 FvH4_6g50490 FvH4_6g50490
malus_domestica	MD09G1036000.v1.1 MD13G1089500.v1.1 MD16G1089700.v1.1 MD17G1037600.v1.1
prunus_persica	Prupe.1G256300_v2.0.a1 Prupe.3G281800_v2.0.a1 Prupe.3G281800_v2.0.a1
pyrus_communis	pycom111g02890 pycom13g07800 pycom16g07680 pycom17g03370
rosa_chinensis	RchiOBHm_Chr2g0170891 RchiOBHm_Chr4g0444151
rosa_laevigata	RLG00000021991
rosa_multiflora	Rmu_sc0009938.1_g000002 Rmu_sc0012638.1_g000012
rosa_roxburghii	Rroxscaffold_2G00080990 Rroxscaffold_5G00384740
rosa_rugosa	Rorug02G0552200 Rorug04G0350500
rosa_samantha	Rh2AG624900 Rh2BG635600 Rh2CG604300 Rh2DG647200 Rh4AG411100 Rh4BG422500 Rh4CG436900 Rh4DG417800
rosa_wichuraiana	Rw2G051760 Rw4G035320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1560
AccB1I	GGYRCC	1 cut(s)	874
AccI	GTMKAC	1 cut(s)	1497
AclWI	GGATC	4 cut(s)	385, 676, 849, 1158
AcsI	RAATTY	1 cut(s)	200
AcuI	CTGAAG	3 cut(s)	45, 1301, 1331
AfiI	CCNNNNNNNGG	1 cut(s)	1459
AgsI	TTSAA	5 cut(s)	206, 257, 272, 1095, 1546
AjnI	CCWGG	2 cut(s)	666, 1206
AloI	GAACNNNNNNTCC	2 cut(s)	215, 247
Alw26I	GTCTC	3 cut(s)	112, 351, 1418
AlwI	GGATC	4 cut(s)	385, 676, 849, 1158
AoxI	GGCC	4 cut(s)	413, 887, 905, 1103
ApoI	RAATTY	1 cut(s)	200
ArsI	GACNNNNNNTTYG	2 cut(s)	941, 973
AspS9I	GGNCC	3 cut(s)	578, 906, 1104
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	4 cut(s)	16, 372, 1067, 1495
AsuII	TTCGAA	1 cut(s)	1226
AvaII	GGWCC	1 cut(s)	578
AxyI	CCTNAGG	1 cut(s)	384
BanI	GGYRCC	1 cut(s)	874
BbsI	GAAGAC	1 cut(s)	1143
BccI	CCATC	5 cut(s)	230, 569, 713, 1156, 1457
BceAI	ACGGC	3 cut(s)	171, 967, 1484
BcgI	CGANNNNNNTGC	2 cut(s)	795, 829
BciT130I	CCWGG	2 cut(s)	668, 1208
BciVI	GTATCC	2 cut(s)	217, 383
BclI	TGATCA	1 cut(s)	195
BcnI	CCSGG	1 cut(s)	523
BcoDI	GTCTC	3 cut(s)	112, 351, 1418
BfaI	CTAG	5 cut(s)	183, 603, 944, 968, 1512
BfmI	CTRYAG	4 cut(s)	788, 1298, 1328, 1358
BfuI	GTATCC	2 cut(s)	217, 383
BglII	AGATCT	1 cut(s)	330
Bme1390I	CCNGG	3 cut(s)	523, 668, 1208
Bme18I	GGWCC	1 cut(s)	578
BmgT120I	GGNCC	3 cut(s)	578, 906, 1104
BmiI	GGNNCC	3 cut(s)	876, 908, 1128
BmrFI	CCNGG	3 cut(s)	523, 668, 1208
BmrI	ACTGGG	1 cut(s)	108
BmsI	GCATC	6 cut(s)	77, 412, 508, 580, 1341, 1378
BmuI	ACTGGG	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	1143
BplI	GAGNNNNNCTC	2 cut(s)	377, 409
BpmI	CTGGAG	1 cut(s)	1229
Bpu14I	TTCGAA	1 cut(s)	1226
BpuMI	CCSGG	1 cut(s)	523
BsaJI	CCNNGG	2 cut(s)	219, 522
Bsc4I	CCNNNNNNNGG	1 cut(s)	1459
Bse1I	ACTGG	3 cut(s)	103, 168, 994
Bse21I	CCTNAGG	1 cut(s)	384
Bse3DI	GCAATG	3 cut(s)	20, 750, 813
BseBI	CCWGG	2 cut(s)	668, 1208
BseDI	CCNNGG	2 cut(s)	219, 522
BseGI	GGATG	2 cut(s)	463, 1468
BseLI	CCNNNNNNNGG	1 cut(s)	1459
BseMI	GCAATG	3 cut(s)	20, 750, 813
BseMII	CTCAG	3 cut(s)	375, 408, 927
BseNI	ACTGG	3 cut(s)	103, 168, 994
BseRI	GAGGAG	2 cut(s)	573, 1427
BshFI	GGCC	4 cut(s)	415, 889, 907, 1105
BshNI	GGYRCC	1 cut(s)	874
BsiSI	CCGG	1 cut(s)	522
BslI	CCNNNNNNNGG	1 cut(s)	1459
BsmAI	GTCTC	3 cut(s)	112, 351, 1418
BsmI	GAATGC	2 cut(s)	761, 1090
BsnI	GGCC	4 cut(s)	415, 889, 907, 1105
Bsp119I	TTCGAA	1 cut(s)	1226
Bsp143I	GATC	7 cut(s)	195, 330, 377, 681, 841, 975, 1163
BspANI	GGCC	4 cut(s)	415, 889, 907, 1105
BspCNI	CTCAG	3 cut(s)	376, 407, 928
BspLI	GGNNCC	3 cut(s)	876, 908, 1128
BspMAI	CTGCAG	4 cut(s)	792, 1302, 1332, 1362
BspPI	GGATC	4 cut(s)	385, 676, 849, 1158
BspT104I	TTCGAA	1 cut(s)	1226
BspT107I	GGYRCC	1 cut(s)	874
BsrDI	GCAATG	3 cut(s)	20, 750, 813
BsrI	ACTGG	3 cut(s)	103, 168, 994
BssECI	CCNNGG	2 cut(s)	219, 522
BssMI	GATC	7 cut(s)	195, 330, 377, 681, 841, 975, 1163
Bst2UI	CCWGG	2 cut(s)	668, 1208
Bst4CI	ACNGT	5 cut(s)	220, 229, 454, 704, 871
Bst6I	CTCTTC	1 cut(s)	64
BstBI	TTCGAA	1 cut(s)	1226
BstC8I	GCNNGC	2 cut(s)	780, 804
BstDEI	CTNAG	3 cut(s)	384, 394, 936
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	2 cut(s)	463, 1468
BstKTI	GATC	7 cut(s)	198, 333, 380, 684, 844, 978, 1166
BstMAI	GTCTC	3 cut(s)	112, 351, 1418
BstMBI	GATC	7 cut(s)	195, 330, 377, 681, 841, 975, 1163
BstNI	CCWGG	2 cut(s)	668, 1208
BstNSI	RCATGY	2 cut(s)	404, 778
BstSCI	CCNGG	3 cut(s)	521, 666, 1206
BstSFI	CTRYAG	4 cut(s)	788, 1298, 1328, 1358
BstV2I	GAAGAC	1 cut(s)	1143
BstX2I	RGATCY	3 cut(s)	330, 681, 1163
BstXI	CCANNNNNNTGG	2 cut(s)	719, 1207
BstYI	RGATCY	3 cut(s)	330, 681, 1163
Bsu36I	CCTNAGG	1 cut(s)	384
BsuI	GTATCC	2 cut(s)	217, 383
BsuRI	GGCC	4 cut(s)	415, 889, 907, 1105
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	2 cut(s)	463, 1468
BtsI	GCAGTG	1 cut(s)	782
BtsIMutI	CAGTG	3 cut(s)	782, 876, 987
Cac8I	GCNNGC	2 cut(s)	780, 804
Cfr13I	GGNCC	3 cut(s)	578, 906, 1104
CseI	GACGC	1 cut(s)	1330
CviAII	CATG	5 cut(s)	401, 569, 775, 1195, 1254
DdeI	CTNAG	3 cut(s)	384, 394, 936
DpnI	GATC	7 cut(s)	197, 332, 379, 683, 843, 977, 1165
DpnII	GATC	7 cut(s)	195, 330, 377, 681, 841, 975, 1163
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco147I	AGGCCT	1 cut(s)	889
Eco47I	GGWCC	1 cut(s)	578
Eco57I	CTGAAG	3 cut(s)	45, 1301, 1331
Eco81I	CCTNAGG	1 cut(s)	384
EcoO109I	RGGNCCY	1 cut(s)	906
EcoRII	CCWGG	2 cut(s)	666, 1206
FaeI	CATG	5 cut(s)	404, 572, 778, 1198, 1257
FalI	AAGNNNNNCTT	2 cut(s)	1225, 1257
FatI	CATG	5 cut(s)	400, 568, 774, 1194, 1253
FbaI	TGATCA	1 cut(s)	195
FblI	GTMKAC	1 cut(s)	1497
FokI	GGATG	2 cut(s)	470, 1475
FspBI	CTAG	5 cut(s)	183, 603, 944, 968, 1512
GsuI	CTGGAG	1 cut(s)	1229
HaeIII	GGCC	4 cut(s)	415, 889, 907, 1105
HapII	CCGG	1 cut(s)	522
HgaI	GACGC	1 cut(s)	1330
Hin1II	CATG	5 cut(s)	404, 572, 778, 1198, 1257
HindIII	AAGCTT	2 cut(s)	245, 1239
HinfI	GANTC	2 cut(s)	305, 1508
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	4 cut(s)	16, 372, 1067, 1495
Hpy166II	GTNNAC	3 cut(s)	406, 965, 1498
Hpy188I	TCNGA	6 cut(s)	310, 885, 1006, 1290, 1320, 1350
Hpy188III	TCNNGA	6 cut(s)	63, 375, 505, 677, 1130, 1512
Hpy8I	GTNNAC	3 cut(s)	406, 965, 1498
Hpy99I	CGWCG	1 cut(s)	629
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	5 cut(s)	220, 229, 454, 704, 871
HpyCH4IV	ACGT	1 cut(s)	624
HpyF3I	CTNAG	3 cut(s)	384, 394, 936
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	5 cut(s)	404, 572, 778, 1198, 1257
Ksp22I	TGATCA	1 cut(s)	195
Kzo9I	GATC	7 cut(s)	195, 330, 377, 681, 841, 975, 1163
LmnI	GCTCC	1 cut(s)	65
LweI	GCATC	6 cut(s)	77, 412, 508, 580, 1341, 1378
MaeI	CTAG	5 cut(s)	183, 603, 944, 968, 1512
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	6 cut(s)	94, 317, 526, 704, 830, 1571
MalI	GATC	7 cut(s)	197, 332, 379, 683, 843, 977, 1165
MboI	GATC	7 cut(s)	195, 330, 377, 681, 841, 975, 1163
MboII	GAAGA	6 cut(s)	51, 520, 599, 938, 985, 1148
MflI	RGATCY	3 cut(s)	330, 681, 1163
MmeI	TCCRAC	1 cut(s)	709
MseI	TTAA	1 cut(s)	914
MslI	CAYNNNNRTG	4 cut(s)	573, 696, 717, 1095
MspA1I	CMGCKG	6 cut(s)	176, 636, 758, 1297, 1327, 1357
MspI	CCGG	1 cut(s)	522
MspR9I	CCNGG	3 cut(s)	523, 668, 1208
Mva1269I	GAATGC	2 cut(s)	761, 1090
MvaI	CCWGG	2 cut(s)	668, 1208
NciI	CCSGG	1 cut(s)	523
NdeII	GATC	7 cut(s)	195, 330, 377, 681, 841, 975, 1163
NlaIII	CATG	5 cut(s)	404, 572, 778, 1198, 1257
NlaIV	GGNNCC	3 cut(s)	876, 908, 1128
NspI	RCATGY	2 cut(s)	404, 778
NspV	TTCGAA	1 cut(s)	1226
PceI	AGGCCT	1 cut(s)	889
PcsI	WCGNNNNNNNCGW	1 cut(s)	355
PctI	GAATGC	2 cut(s)	761, 1090
PfeI	GAWTC	2 cut(s)	305, 1508
PsiI	TTATAA	1 cut(s)	1560
Psp6I	CCWGG	2 cut(s)	666, 1206
PspGI	CCWGG	2 cut(s)	666, 1206
PspN4I	GGNNCC	3 cut(s)	876, 908, 1128
PspPI	GGNCC	3 cut(s)	578, 906, 1104
PstI	CTGCAG	4 cut(s)	792, 1302, 1332, 1362
PsuI	RGATCY	3 cut(s)	330, 681, 1163
PvuII	CAGCTG	6 cut(s)	176, 636, 758, 1297, 1327, 1357
RseI	CAYNNNNRTG	4 cut(s)	573, 696, 717, 1095
SaqAI	TTAA	1 cut(s)	914
Sau3AI	GATC	7 cut(s)	195, 330, 377, 681, 841, 975, 1163
Sau96I	GGNCC	3 cut(s)	578, 906, 1104
ScrFI	CCNGG	3 cut(s)	523, 668, 1208
SfaNI	GCATC	6 cut(s)	77, 412, 508, 580, 1341, 1378
SfcI	CTRYAG	4 cut(s)	788, 1298, 1328, 1358
SfuI	TTCGAA	1 cut(s)	1226
SinI	GGWCC	1 cut(s)	578
SmiMI	CAYNNNNRTG	4 cut(s)	573, 696, 717, 1095
SseBI	AGGCCT	1 cut(s)	889
SspI	AATATT	2 cut(s)	472, 1023
SspMI	CTAG	5 cut(s)	183, 603, 944, 968, 1512
StuI	AGGCCT	1 cut(s)	889
StyD4I	CCNGG	3 cut(s)	521, 666, 1206
TaaI	ACNGT	5 cut(s)	220, 229, 454, 704, 871
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	4 cut(s)	191, 234, 1226, 1534
TfiI	GAWTC	2 cut(s)	305, 1508
Tru1I	TTAA	1 cut(s)	914
Tru9I	TTAA	1 cut(s)	914
TscAI	CASTG	3 cut(s)	789, 876, 994
TspDTI	ATGAA	5 cut(s)	446, 506, 939, 945, 1242
TspGWI	ACGGA	1 cut(s)	889
TspRI	CASTG	3 cut(s)	789, 876, 994
VpaK11BI	GGWCC	1 cut(s)	578
XapI	RAATTY	1 cut(s)	200
XbaI	TCTAGA	1 cut(s)	1511
XceI	RCATGY	2 cut(s)	404, 778
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1460
XmiI	GTMKAC	1 cut(s)	1497
XspI	CTAG	5 cut(s)	183, 603, 944, 968, 1512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.