Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003391

Physical Location & Seq

Genomic Coordinates Forward (+)

67471075 .. 67475990

Gene Structure 4916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG436900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGTATTTATCGGTACCTCCTGAGATTGTAAGTGGGTATTTCTCAAATTTGGCGTCTGTGTTTGTGAAATGGCTCTGGTCACTGAAAGCAACAACCAAGACAGCGGTTTCGGGCCGTCCGATGGTGAAGTTTGAGAGTGGGTTTACGGTGGAGACAGTGTTTGATGGGAGCAAGCTTGGTATTGAGCCTCACACTGTTGAGGTTTTGCCAAATGGGGAGCTTTTGATTTTGGACTCTGCTAATAGTAACATTTATAGAATGTCTTCGTCTCTATCTATATATAGCAGACCAAAGCTGGTTGCAGGGTCCCCTGAAGGCAATGTTGGACATATAGATGGAAAGCCCAGAGAGGCAAGAATGAACCACCCAAAGGGGCTTACAGTTGATGACAGGGGAAACATTTATATTGCAGACACAAGAAATATGGCAATCAGGAAGATTAGTGATGCTGGGGTCACAACAATTGCGGGAGGGAAATTGGGCCGTGGGGGAAGCCATGTGGATGGACCAAGTGAAGATGCAAAATTTTCCAACGACTTTGATGTGGTTTACATTGGAAGCAGCTGCTCCTTACTTGTCATAGACAGAGGAAATCAAGCTATCAGGGAGATCCAACTCCATTTTGATGATTGTGCTTACCAATATGGAAGTGGTTTCCCACTTGGGATTGCGATGCTTCTCGGGGCAGGCTTTTTTGGTTACATGTTAGCATTACTGCAACGTAGAGTGGGTACAATTGTCTCTTCCCAAAATGATGAAGACCTAACCAAGCCAAGAATGCCGTCAAGTCCATACAAAAAGCCTCTGAAATCAGTCATGCCACCACTGATTCCAACTGAAGATGAGCAGGAGAAGCAAGAAGAAGGCTTCTTTGGATCACTTGGAAAGCTTTTAGTCAATGCCTGGGCATCTATTTTGGAAATTCTTGGGAAAAAGCATTCAAACTATCAAGACCAAAGCCAGCAGCAACAGCAGCACAAGCATTCAAATACCTGGCCTGTGCAAGATAGTTATGTGATAGCAGATGAGGATGAGCCGCCTACAATTGAGACCCGAACCCCTACCCCACGCAAAACCTATGCGTTTATGGCCAAGGATGCTGAAACAATGCAACAGTTGCGACAAAGCCGAGTTTTCTACAATGGGTGGGGTGATCATCAACAGCAGCCAAAACAGCAGCAGCATTATCATCGTCACCAGTCATCCACTCCACAAACTTTCTATGAGCAGAGCTGTGATCAAACCACTGAGATTGTGTTTGGGGCAGTCCAGGAGCAGGATGGGAAGGGTGAAGCTGTGGTCATTAAGCCTATTGATTATGGAGATCCCATGCTTGGTCATCGCAGTGTTAGCTACCGATTCAATTCAATGGGTTATCCCCGTGGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

463

Amino Acids

51.58

Weight (kDa)

6.24

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70280 AT1G70280
fragaria_vesca	FvH4_4g34810 FvH4_4g34810 FvH4_6g50490 FvH4_6g50490
malus_domestica	MD09G1036000.v1.1 MD13G1089500.v1.1 MD16G1089700.v1.1 MD17G1037600.v1.1
prunus_persica	Prupe.1G256300_v2.0.a1 Prupe.3G281800_v2.0.a1 Prupe.3G281800_v2.0.a1
pyrus_communis	pycom111g02890 pycom13g07800 pycom16g07680 pycom17g03370
rosa_chinensis	RchiOBHm_Chr2g0170891 RchiOBHm_Chr4g0444151
rosa_laevigata	RLG00000021991
rosa_multiflora	Rmu_sc0009938.1_g000002 Rmu_sc0012638.1_g000012
rosa_roxburghii	Rroxscaffold_2G00080990 Rroxscaffold_5G00384740
rosa_rugosa	Rorug02G0552200 Rorug04G0350500
rosa_samantha	Rh2AG624900 Rh2BG635600 Rh2CG604300 Rh2DG647200 Rh4AG411100 Rh4BG422500 Rh4CG436900 Rh4DG417800
rosa_wichuraiana	Rw2G051760 Rw4G035320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	13
AccB1I	GGYRCC	1 cut(s)	13
AciI	CCGC	3 cut(s)	104, 467, 1037
AclWI	GGATC	3 cut(s)	604, 883, 1319
AcoI	YGGCCR	1 cut(s)	1089
AcsI	RAATTY	3 cut(s)	46, 524, 921
AcuI	CTGAAG	2 cut(s)	333, 858
AcyI	GRCGYC	1 cut(s)	53
AfaI	GTAC	2 cut(s)	15, 733
AfiI	CCNNNNNNNGG	4 cut(s)	121, 370, 1276, 1334
AflIII	ACRYGT	1 cut(s)	702
AgsI	TTSAA	4 cut(s)	942, 987, 1363, 1368
AjnI	CCWGG	3 cut(s)	902, 992, 1269
AjuI	GAANNNNNNNTTGG	4 cut(s)	306, 338, 855, 887
AluBI	AGCT	9 cut(s)	175, 220, 295, 564, 599, 889, 1233, 1295, 1353
AluI	AGCT	9 cut(s)	175, 220, 295, 564, 599, 889, 1233, 1295, 1353
Alw26I	GTCTC	4 cut(s)	146, 273, 745, 1043
AlwI	GGATC	3 cut(s)	604, 883, 1319
Ama87I	CYCGRG	1 cut(s)	680
AoxI	GGCC	4 cut(s)	112, 481, 995, 1089
ApeKI	GCWGC	7 cut(s)	561, 564, 964, 973, 1165, 1177, 1180
ApoI	RAATTY	3 cut(s)	46, 524, 921
ArsI	GACNNNNNNTTYG	4 cut(s)	38, 70, 91, 123
Asp700I	GAANNNNTTC	1 cut(s)	262
Asp718I	GGTACC	1 cut(s)	13
AspS9I	GGNCC	4 cut(s)	112, 306, 481, 506
AsuHPI	GGTGA	4 cut(s)	136, 1163, 1187, 1301
AvaI	CYCGRG	1 cut(s)	680
AvaII	GGWCC	2 cut(s)	306, 506
BaeI	ACNNNNGTAYC	2 cut(s)	723, 756
BalI	TGGCCA	1 cut(s)	1091
BanI	GGYRCC	1 cut(s)	13
BbsI	GAAGAC	2 cut(s)	255, 765
BbvI	GCAGC	7 cut(s)	551, 573, 976, 985, 1177, 1189, 1192
BccI	CCATC	5 cut(s)	115, 158, 329, 497, 1274
BceAI	ACGGC	3 cut(s)	99, 468, 766
BcgI	CGANNNNNNTGC	2 cut(s)	1172, 1206
BciT130I	CCWGG	3 cut(s)	904, 994, 1271
BclI	TGATCA	2 cut(s)	1153, 1237
BcoDI	GTCTC	4 cut(s)	146, 273, 745, 1043
BisI	GCNGC	8 cut(s)	562, 565, 965, 974, 1037, 1166, 1178, 1181
BlsI	GCNGC	8 cut(s)	563, 566, 966, 975, 1038, 1167, 1179, 1182
Bme1390I	CCNGG	3 cut(s)	904, 994, 1271
Bme18I	GGWCC	2 cut(s)	306, 506
BmeT110I	CYCGRG	1 cut(s)	680
BmgT120I	GGNCC	4 cut(s)	112, 306, 481, 506
BmiI	GGNNCC	3 cut(s)	15, 307, 308
BmrFI	CCNGG	3 cut(s)	904, 994, 1271
BmsI	GCATC	5 cut(s)	436, 508, 663, 917, 1087
BpiI	GAAGAC	2 cut(s)	255, 765
BsaHI	GRCGYC	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	1043
BsaJI	CCNNGG	4 cut(s)	484, 903, 1092, 1381
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	4 cut(s)	121, 370, 1276, 1334
Bse1I	ACTGG	1 cut(s)	1198
Bse3DI	GCAATG	1 cut(s)	325
BseBI	CCWGG	3 cut(s)	904, 994, 1271
BseDI	CCNNGG	4 cut(s)	484, 903, 1092, 1381
BseGI	GGATG	5 cut(s)	508, 1036, 1102, 1202, 1285
BseLI	CCNNNNNNNGG	4 cut(s)	121, 370, 1276, 1334
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	2 cut(s)	12, 1239
BseNI	ACTGG	1 cut(s)	1198
BseXI	GCAGC	7 cut(s)	551, 573, 976, 985, 1177, 1189, 1192
BseYI	CCCAGC	1 cut(s)	449
BshFI	GGCC	4 cut(s)	114, 483, 997, 1091
BshNI	GGYRCC	1 cut(s)	13
BsiHKCI	CYCGRG	1 cut(s)	680
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	4 cut(s)	121, 370, 1276, 1334
BsmAI	GTCTC	4 cut(s)	146, 273, 745, 1043
BsmBI	CGTCTC	1 cut(s)	273
BsmFI	GGGAC	1 cut(s)	292
BsmI	GAATGC	3 cut(s)	783, 937, 982
BsnI	GGCC	4 cut(s)	114, 483, 997, 1091
Bso31I	GGTCTC	1 cut(s)	1043
BsoBI	CYCGRG	1 cut(s)	680
Bsp143I	GATC	5 cut(s)	609, 875, 1153, 1237, 1324
BspACI	CCGC	3 cut(s)	104, 467, 1037
BspANI	GGCC	4 cut(s)	114, 483, 997, 1091
BspCNI	CTCAG	2 cut(s)	13, 1240
BspLI	GGNNCC	3 cut(s)	15, 307, 308
BspPI	GGATC	3 cut(s)	604, 883, 1319
BspT107I	GGYRCC	1 cut(s)	13
BspTNI	GGTCTC	1 cut(s)	1043
BsrDI	GCAATG	1 cut(s)	325
BsrI	ACTGG	1 cut(s)	1198
BssECI	CCNNGG	4 cut(s)	484, 903, 1092, 1381
BssMI	GATC	5 cut(s)	609, 875, 1153, 1237, 1324
BssNI	GRCGYC	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	1092
Bst2UI	CCWGG	3 cut(s)	904, 994, 1271
Bst4CI	ACNGT	5 cut(s)	148, 157, 196, 382, 1116
Bst6I	CTCTTC	1 cut(s)	748
BstACI	GRCGYC	1 cut(s)	53
BstAPI	GCANNNNNTGC	1 cut(s)	1117
BstC8I	GCNNGC	3 cut(s)	173, 688, 962
BstDEI	CTNAG	2 cut(s)	21, 1248
BstDSI	CCRYGG	2 cut(s)	484, 1381
BstF5I	GGATG	5 cut(s)	508, 1036, 1102, 1202, 1285
BstKTI	GATC	5 cut(s)	612, 878, 1156, 1240, 1327
BstMAI	GTCTC	4 cut(s)	146, 273, 745, 1043
BstMBI	GATC	5 cut(s)	609, 875, 1153, 1237, 1324
BstNI	CCWGG	3 cut(s)	904, 994, 1271
BstNSI	RCATGY	1 cut(s)	706
BstSCI	CCNGG	3 cut(s)	902, 992, 1269
BstV1I	GCAGC	7 cut(s)	551, 573, 976, 985, 1177, 1189, 1192
BstV2I	GAAGAC	2 cut(s)	255, 765
BstX2I	RGATCY	2 cut(s)	609, 1324
BstXI	CCANNNNNNTGG	1 cut(s)	503
BstYI	RGATCY	2 cut(s)	609, 1324
BsuRI	GGCC	4 cut(s)	114, 483, 997, 1091
BtgI	CCRYGG	2 cut(s)	484, 1381
BtgZI	GCGATG	2 cut(s)	686, 1325
BtsCI	GGATG	5 cut(s)	508, 1036, 1102, 1202, 1285
BtsI	GCAGTG	1 cut(s)	1351
BtsIMutI	CAGTG	6 cut(s)	80, 162, 192, 824, 1245, 1351
Cac8I	GCNNGC	3 cut(s)	173, 688, 962
Cfr13I	GGNCC	4 cut(s)	112, 306, 481, 506
CseI	GACGC	1 cut(s)	42
Csp6I	GTAC	2 cut(s)	14, 732
CspCI	CAANNNNNGTGG	2 cut(s)	1234, 1269
CviAII	CATG	4 cut(s)	497, 703, 817, 1330
CviQI	GTAC	2 cut(s)	14, 732
DdeI	CTNAG	2 cut(s)	21, 1248
DpnI	GATC	5 cut(s)	611, 877, 1155, 1239, 1326
DpnII	GATC	5 cut(s)	609, 875, 1153, 1237, 1324
EaeI	YGGCCR	1 cut(s)	1089
Eam1104I	CTCTTC	1 cut(s)	748
EarI	CTCTTC	1 cut(s)	748
Eco130I	CCWWGG	1 cut(s)	1092
Eco31I	GGTCTC	1 cut(s)	1043
Eco47I	GGWCC	2 cut(s)	306, 506
Eco57I	CTGAAG	2 cut(s)	333, 858
Eco88I	CYCGRG	1 cut(s)	680
EcoO109I	RGGNCCY	1 cut(s)	306
EcoRII	CCWGG	3 cut(s)	902, 992, 1269
EcoT14I	CCWWGG	1 cut(s)	1092
ErhI	CCWWGG	1 cut(s)	1092
Esp3I	CGTCTC	1 cut(s)	273
FaeI	CATG	4 cut(s)	500, 706, 820, 1333
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	4 cut(s)	496, 702, 816, 1329
FauI	CCCGC	1 cut(s)	460
FbaI	TGATCA	2 cut(s)	1153, 1237
Fnu4HI	GCNGC	8 cut(s)	562, 565, 965, 974, 1037, 1166, 1178, 1181
FokI	GGATG	5 cut(s)	515, 1043, 1109, 1189, 1292
Fsp4HI	GCNGC	8 cut(s)	562, 565, 965, 974, 1037, 1166, 1178, 1181
GluI	GCNGC	8 cut(s)	562, 565, 965, 974, 1037, 1166, 1178, 1181
GsaI	CCCAGC	1 cut(s)	453
HaeIII	GGCC	4 cut(s)	114, 483, 997, 1091
HgaI	GACGC	1 cut(s)	42
Hin1I	GRCGYC	1 cut(s)	53
Hin1II	CATG	4 cut(s)	500, 706, 820, 1333
HindIII	AAGCTT	2 cut(s)	173, 887
HinfI	GANTC	3 cut(s)	233, 829, 1359
HphI	GGTGA	4 cut(s)	136, 1163, 1187, 1301
Hpy166II	GTNNAC	2 cut(s)	144, 550
Hpy188I	TCNGA	2 cut(s)	120, 807
Hpy188III	TCNNGA	3 cut(s)	20, 433, 950
Hpy8I	GTNNAC	2 cut(s)	144, 550
HpyAV	CCTTC	3 cut(s)	308, 857, 1279
HpyCH4III	ACNGT	5 cut(s)	148, 157, 196, 382, 1116
HpyCH4IV	ACGT	1 cut(s)	721
HpyCH4V	TGCA	6 cut(s)	302, 410, 521, 718, 1003, 1111
HpyF3I	CTNAG	2 cut(s)	21, 1248
HpySE526I	ACGT	1 cut(s)	721
Hsp92I	GRCGYC	1 cut(s)	53
Hsp92II	CATG	4 cut(s)	500, 706, 820, 1333
KflI	GGGWCCC	1 cut(s)	306
KpnI	GGTACC	1 cut(s)	17
Ksp22I	TGATCA	2 cut(s)	1153, 1237
Kzo9I	GATC	5 cut(s)	609, 875, 1153, 1237, 1324
LmnI	GCTCC	4 cut(s)	168, 217, 572, 1273
Lsp1109I	GCAGC	7 cut(s)	551, 573, 976, 985, 1177, 1189, 1192
LweI	GCATC	5 cut(s)	436, 508, 663, 917, 1087
MaeII	ACGT	1 cut(s)	721
MaeIII	GTNAC	5 cut(s)	78, 245, 454, 698, 1193
MalI	GATC	5 cut(s)	611, 877, 1155, 1239, 1326
MboI	GATC	5 cut(s)	609, 875, 1153, 1237, 1324
MboII	GAAGA	7 cut(s)	255, 448, 527, 735, 770, 851, 872
MfeI	CAATTG	3 cut(s)	462, 735, 1044
MflI	RGATCY	2 cut(s)	609, 1324
MlsI	TGGCCA	1 cut(s)	1091
MluCI	AATT	8 cut(s)	46, 462, 476, 524, 735, 921, 1044, 1363
MluNI	TGGCCA	1 cut(s)	1091
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	4 cut(s)	304, 555, 637, 857
MnlI	CCTC	8 cut(s)	27, 193, 198, 343, 464, 581, 813, 1021
Mox20I	TGGCCA	1 cut(s)	1091
MroXI	GAANNNNTTC	1 cut(s)	262
MscI	TGGCCA	1 cut(s)	1091
MseI	TTAA	1 cut(s)	1305
MslI	CAYNNNNRTG	4 cut(s)	333, 501, 624, 1344
Msp20I	TGGCCA	1 cut(s)	1091
MspA1I	CMGCKG	2 cut(s)	104, 564
MspR9I	CCNGG	3 cut(s)	904, 994, 1271
MunI	CAATTG	3 cut(s)	462, 735, 1044
Mva1269I	GAATGC	3 cut(s)	783, 937, 982
MvaI	CCWGG	3 cut(s)	904, 994, 1271
NdeII	GATC	5 cut(s)	609, 875, 1153, 1237, 1324
NlaIII	CATG	4 cut(s)	500, 706, 820, 1333
NlaIV	GGNNCC	3 cut(s)	15, 307, 308
NmeAIII	GCCGAG	1 cut(s)	1154
NmuCI	GTSAC	3 cut(s)	78, 454, 1193
NspI	RCATGY	1 cut(s)	706
PciI	ACATGT	1 cut(s)	702
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PctI	GAATGC	3 cut(s)	783, 937, 982
PdmI	GAANNNNTTC	1 cut(s)	262
PfeI	GAWTC	2 cut(s)	829, 1359
PfoI	TCCNGGA	1 cut(s)	1269
PkrI	GCNGC	8 cut(s)	563, 566, 966, 975, 1038, 1167, 1179, 1182
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PpuMI	RGGWCCY	1 cut(s)	306
PscI	ACATGT	1 cut(s)	702
Psp5II	RGGWCCY	1 cut(s)	306
Psp6I	CCWGG	3 cut(s)	902, 992, 1269
PspFI	CCCAGC	1 cut(s)	449
PspGI	CCWGG	3 cut(s)	902, 992, 1269
PspN4I	GGNNCC	3 cut(s)	15, 307, 308
PspPI	GGNCC	4 cut(s)	112, 306, 481, 506
PspPPI	RGGWCCY	1 cut(s)	306
PsuI	RGATCY	2 cut(s)	609, 1324
PvuII	CAGCTG	1 cut(s)	564
RsaI	GTAC	2 cut(s)	15, 733
RsaNI	GTAC	2 cut(s)	14, 732
RseI	CAYNNNNRTG	4 cut(s)	333, 501, 624, 1344
SaqAI	TTAA	1 cut(s)	1305
SatI	GCNGC	8 cut(s)	562, 565, 965, 974, 1037, 1166, 1178, 1181
Sau3AI	GATC	5 cut(s)	609, 875, 1153, 1237, 1324
Sau96I	GGNCC	4 cut(s)	112, 306, 481, 506
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	3 cut(s)	904, 994, 1271
SfaNI	GCATC	5 cut(s)	436, 508, 663, 917, 1087
SinI	GGWCC	2 cut(s)	306, 506
SmiMI	CAYNNNNRTG	4 cut(s)	333, 501, 624, 1344
Sse9I	AATT	8 cut(s)	46, 462, 476, 524, 735, 921, 1044, 1363
SsiI	CCGC	3 cut(s)	104, 467, 1037
StyD4I	CCNGG	3 cut(s)	902, 992, 1269
StyI	CCWWGG	1 cut(s)	1092
TaaI	ACNGT	5 cut(s)	148, 157, 196, 382, 1116
TaiI	ACGT	1 cut(s)	724
TasI	AATT	8 cut(s)	46, 462, 476, 524, 735, 921, 1044, 1363
TauI	GCSGC	1 cut(s)	1039
TfiI	GAWTC	2 cut(s)	829, 1359
Tru1I	TTAA	1 cut(s)	1305
Tru9I	TTAA	1 cut(s)	1305
TscAI	CASTG	6 cut(s)	87, 162, 199, 831, 1252, 1351
TseFI	GTSAC	3 cut(s)	78, 454, 1193
TseI	GCWGC	7 cut(s)	561, 564, 964, 973, 1165, 1177, 1180
Tsp45I	GTSAC	3 cut(s)	78, 454, 1193
TspDTI	ATGAA	2 cut(s)	374, 771
TspRI	CASTG	6 cut(s)	87, 162, 199, 831, 1252, 1351
VpaK11BI	GGWCC	2 cut(s)	306, 506
XapI	RAATTY	3 cut(s)	46, 524, 921
XceI	RCATGY	1 cut(s)	706
XcmI	CCANNNNNNNNNTGG	2 cut(s)	647, 1277
XmnI	GAANNNNTTC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.