Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003391

Physical Location & Seq

Genomic Coordinates Forward (+)

63973849 .. 63977467

Gene Structure 3619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00384740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGAGTCCCACATCTAAGATTGTAACTGGGTATTTCTCAAATTTGGCGTCTGTGTTTATGAAATGGCTCTGGTCACTGAAAGCAACAACCAAGACAGCGGTTTCGGGCCGTCCGATGGTGAAGTTTGAGAGTGGGTTTACGGTGGAGACAGTGTTTGATGGGAGCAAGCTTGGTATTGAGCCTCACACTGTTGAGGTTTTGCCAAATGGGGAGCTTTTGATTTTGGACTCTGCTAATAGTAACATTTATAGAATGTCTTCGTCTCTATCTATATATAGCAGACCAAAGCTGGTTGCAGGGTCCCCTGAAGGCAATGTTGGACATATAGATGGAAAGCCCAGAGAGGCAAGAATGAACCACCCAAAGGGGCTTACAGTTGATGACAGGGGAAACATTTATATTGCAGACACAAGAAATATGGCAATCAGGAAGATTAGTGATGCTGGGGTCACAACAATTGCAGGAGGGAAATTGGGCCGCGGGGGAAGCCATGTGGATGGACCAAGTGAAGATGCAAAATTTTCGAACGACTTTGATGTGGTTTACATTGGAAGCAGCTGCTCCTTACTTGTCATAGACAGAGGAAATCAAGCTATCAGGGAGATCCAACTCCATTTTGATGATTGTGCTTACCAATATGGAAGTGGCTTCCCGCTTGGGATTGCGATGCTTCTGGGGGCAGGCTTTTTTGGTTACATGTTAGCATTACTGCAACGTAGAGTGGGTACAATTGTCTCTTCCCAAAATGATGAAGTCCTAACCAATCCAGGAATGCCGTCAAGTCCATACAAAAAGCCTCTGAAATCAGTCATGCCACCACTGATTCCAACTGAAGATGAGCAGGAGAAGCAAGAAGAAGGCTTCTTTGGATCACTTGGAAAGCTTTTAGTCAATGCCTGGGCGTCTATTTTGGAAATTCTTGGGAAAAAGCATTCAAACTATCCAGTCCAAAGCCAGCAGCAACAGCAGCACAAGCATTCAAATAATAGTTGGCCTGTGCAAGATAGTTATGTGATAGCAGATGAGGACGAGCCGCCTACAATTGAGACCCGAACCCCTACCCCACGCAAAACCTATGCGTTTATGGCCAAGGATGCTGAAACAATGCAACAGTTGCGACAAAGCCGAGTTTTCTACAATGGGTGGGGTGATCATCAACAGCAGCCAAAACAGCAGCAGCATTATCATCGTCACCAGTCATCCACTCCACAAACTTTCTATGAGCAGAGCTGTGATCAAACCACTGAGATTGTGTTTGGGGCAGTCCAGGAGCAGGATGGGAAGGGTGAAGCTGTGGTCATTAAGCCTATTGATTATGGAGATCCCATGCTTGGTCATTGCAGTGTTAGCTACCGATTCAATTCAATGGGTTATCCCCGTGGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

462

Amino Acids

51.21

Weight (kDa)

6.36

Isoelectric Point (pI)

49.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70280 AT1G70280
fragaria_vesca	FvH4_4g34810 FvH4_4g34810 FvH4_6g50490 FvH4_6g50490
malus_domestica	MD09G1036000.v1.1 MD13G1089500.v1.1 MD16G1089700.v1.1 MD17G1037600.v1.1
prunus_persica	Prupe.1G256300_v2.0.a1 Prupe.3G281800_v2.0.a1 Prupe.3G281800_v2.0.a1
pyrus_communis	pycom111g02890 pycom13g07800 pycom16g07680 pycom17g03370
rosa_chinensis	RchiOBHm_Chr2g0170891 RchiOBHm_Chr4g0444151
rosa_laevigata	RLG00000021991
rosa_multiflora	Rmu_sc0009938.1_g000002 Rmu_sc0012638.1_g000012
rosa_roxburghii	Rroxscaffold_2G00080990 Rroxscaffold_5G00384740
rosa_rugosa	Rorug02G0552200 Rorug04G0350500
rosa_samantha	Rh2AG624900 Rh2BG635600 Rh2CG604300 Rh2DG647200 Rh4AG411100 Rh4BG422500 Rh4CG436900 Rh4DG417800
rosa_wichuraiana	Rw2G051760 Rw4G035320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	480
AciI	CCGC	5 cut(s)	98, 478, 480, 653, 1034
AclWI	GGATC	3 cut(s)	598, 877, 1316
AcoI	YGGCCR	1 cut(s)	1086
AcsI	RAATTY	3 cut(s)	40, 518, 915
AcuI	CTGAAG	2 cut(s)	327, 852
AcyI	GRCGYC	2 cut(s)	47, 902
AfaI	GTAC	1 cut(s)	727
AfiI	CCNNNNNNNGG	4 cut(s)	115, 364, 1273, 1331
AflIII	ACRYGT	1 cut(s)	696
AgsI	TTSAA	4 cut(s)	936, 981, 1360, 1365
AjnI	CCWGG	3 cut(s)	766, 896, 1266
AjuI	GAANNNNNNNTTGG	4 cut(s)	300, 332, 849, 881
AluBI	AGCT	9 cut(s)	169, 214, 289, 558, 593, 883, 1230, 1292, 1350
AluI	AGCT	9 cut(s)	169, 214, 289, 558, 593, 883, 1230, 1292, 1350
Alw26I	GTCTC	4 cut(s)	140, 267, 739, 1040
AlwI	GGATC	3 cut(s)	598, 877, 1316
AoxI	GGCC	4 cut(s)	106, 475, 992, 1086
ApeKI	GCWGC	7 cut(s)	555, 558, 958, 967, 1162, 1174, 1177
ApoI	RAATTY	3 cut(s)	40, 518, 915
ArsI	GACNNNNNNTTYG	4 cut(s)	32, 64, 85, 117
Asp700I	GAANNNNTTC	1 cut(s)	256
AspS9I	GGNCC	4 cut(s)	106, 300, 475, 500
AsuHPI	GGTGA	4 cut(s)	130, 1160, 1184, 1298
AsuII	TTCGAA	1 cut(s)	524
AvaII	GGWCC	2 cut(s)	300, 500
BaeI	ACNNNNGTAYC	2 cut(s)	717, 750
BalI	TGGCCA	1 cut(s)	1088
BbsI	GAAGAC	1 cut(s)	249
BbvI	GCAGC	7 cut(s)	545, 567, 970, 979, 1174, 1186, 1189
BccI	CCATC	5 cut(s)	109, 152, 323, 491, 1271
BceAI	ACGGC	2 cut(s)	93, 760
BcgI	CGANNNNNNTGC	4 cut(s)	504, 538, 1169, 1203
BciT130I	CCWGG	3 cut(s)	768, 898, 1268
BclI	TGATCA	2 cut(s)	1150, 1234
BcoDI	GTCTC	4 cut(s)	140, 267, 739, 1040
BisI	GCNGC	9 cut(s)	478, 556, 559, 959, 968, 1034, 1163, 1175, 1178
BlsI	GCNGC	9 cut(s)	479, 557, 560, 960, 969, 1035, 1164, 1176, 1179
Bme1390I	CCNGG	3 cut(s)	768, 898, 1268
Bme18I	GGWCC	2 cut(s)	300, 500
BmgT120I	GGNCC	4 cut(s)	106, 300, 475, 500
BmiI	GGNNCC	2 cut(s)	301, 302
BmrFI	CCNGG	3 cut(s)	768, 898, 1268
BmrI	ACTGGG	1 cut(s)	36
BmsI	GCATC	4 cut(s)	430, 502, 657, 1084
BmuI	ACTGGG	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	249
Bpu14I	TTCGAA	1 cut(s)	524
BsaHI	GRCGYC	2 cut(s)	47, 902
BsaI	GGTCTC	1 cut(s)	1040
BsaJI	CCNNGG	4 cut(s)	478, 897, 1089, 1378
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	4 cut(s)	115, 364, 1273, 1331
Bse1I	ACTGG	3 cut(s)	31, 944, 1195
Bse3DI	GCAATG	2 cut(s)	319, 1336
BseBI	CCWGG	3 cut(s)	768, 898, 1268
BseDI	CCNNGG	4 cut(s)	478, 897, 1089, 1378
BseGI	GGATG	4 cut(s)	502, 1099, 1199, 1282
BseLI	CCNNNNNNNGG	4 cut(s)	115, 364, 1273, 1331
BseMI	GCAATG	2 cut(s)	319, 1336
BseMII	CTCAG	1 cut(s)	1236
BseNI	ACTGG	3 cut(s)	31, 944, 1195
BseXI	GCAGC	7 cut(s)	545, 567, 970, 979, 1174, 1186, 1189
BseYI	CCCAGC	1 cut(s)	443
Bsh1236I	CGCG	1 cut(s)	480
BshFI	GGCC	4 cut(s)	108, 477, 994, 1088
BslFI	GGGAC	1 cut(s)	286
BslI	CCNNNNNNNGG	4 cut(s)	115, 364, 1273, 1331
BsmAI	GTCTC	4 cut(s)	140, 267, 739, 1040
BsmBI	CGTCTC	1 cut(s)	267
BsmFI	GGGAC	1 cut(s)	286
BsmI	GAATGC	3 cut(s)	777, 931, 976
BsnI	GGCC	4 cut(s)	108, 477, 994, 1088
Bso31I	GGTCTC	1 cut(s)	1040
Bsp119I	TTCGAA	1 cut(s)	524
Bsp143I	GATC	5 cut(s)	603, 869, 1150, 1234, 1321
BspACI	CCGC	5 cut(s)	98, 478, 480, 653, 1034
BspANI	GGCC	4 cut(s)	108, 477, 994, 1088
BspCNI	CTCAG	1 cut(s)	1237
BspFNI	CGCG	1 cut(s)	480
BspLI	GGNNCC	2 cut(s)	301, 302
BspPI	GGATC	3 cut(s)	598, 877, 1316
BspT104I	TTCGAA	1 cut(s)	524
BspTNI	GGTCTC	1 cut(s)	1040
BsrDI	GCAATG	2 cut(s)	319, 1336
BsrI	ACTGG	3 cut(s)	31, 944, 1195
BssECI	CCNNGG	4 cut(s)	478, 897, 1089, 1378
BssMI	GATC	5 cut(s)	603, 869, 1150, 1234, 1321
BssNI	GRCGYC	2 cut(s)	47, 902
BssT1I	CCWWGG	1 cut(s)	1089
Bst2UI	CCWGG	3 cut(s)	768, 898, 1268
Bst4CI	ACNGT	5 cut(s)	142, 151, 190, 376, 1113
Bst6I	CTCTTC	1 cut(s)	742
BstACI	GRCGYC	2 cut(s)	47, 902
BstAPI	GCANNNNNTGC	1 cut(s)	1114
BstBI	TTCGAA	1 cut(s)	524
BstC8I	GCNNGC	3 cut(s)	167, 682, 956
BstDEI	CTNAG	2 cut(s)	15, 1245
BstDSI	CCRYGG	2 cut(s)	478, 1378
BstF5I	GGATG	4 cut(s)	502, 1099, 1199, 1282
BstFNI	CGCG	1 cut(s)	480
BstKTI	GATC	5 cut(s)	606, 872, 1153, 1237, 1324
BstMAI	GTCTC	4 cut(s)	140, 267, 739, 1040
BstMBI	GATC	5 cut(s)	603, 869, 1150, 1234, 1321
BstNI	CCWGG	3 cut(s)	768, 898, 1268
BstNSI	RCATGY	1 cut(s)	700
BstSCI	CCNGG	3 cut(s)	766, 896, 1266
BstUI	CGCG	1 cut(s)	480
BstV1I	GCAGC	7 cut(s)	545, 567, 970, 979, 1174, 1186, 1189
BstV2I	GAAGAC	1 cut(s)	249
BstX2I	RGATCY	2 cut(s)	603, 1321
BstXI	CCANNNNNNTGG	1 cut(s)	497
BstYI	RGATCY	2 cut(s)	603, 1321
BsuRI	GGCC	4 cut(s)	108, 477, 994, 1088
BtgI	CCRYGG	2 cut(s)	478, 1378
BtgZI	GCGATG	1 cut(s)	680
BtsCI	GGATG	4 cut(s)	502, 1099, 1199, 1282
BtsI	GCAGTG	1 cut(s)	1348
BtsIMutI	CAGTG	6 cut(s)	74, 156, 186, 818, 1242, 1348
Cac8I	GCNNGC	3 cut(s)	167, 682, 956
Cfr13I	GGNCC	4 cut(s)	106, 300, 475, 500
Cfr42I	CCGCGG	1 cut(s)	481
CseI	GACGC	2 cut(s)	36, 891
Csp6I	GTAC	1 cut(s)	726
CspCI	CAANNNNNGTGG	2 cut(s)	1231, 1266
CviAII	CATG	4 cut(s)	491, 697, 811, 1327
CviQI	GTAC	1 cut(s)	726
DdeI	CTNAG	2 cut(s)	15, 1245
DpnI	GATC	5 cut(s)	605, 871, 1152, 1236, 1323
DpnII	GATC	5 cut(s)	603, 869, 1150, 1234, 1321
EaeI	YGGCCR	1 cut(s)	1086
Eam1104I	CTCTTC	1 cut(s)	742
EarI	CTCTTC	1 cut(s)	742
Eco130I	CCWWGG	1 cut(s)	1089
Eco31I	GGTCTC	1 cut(s)	1040
Eco47I	GGWCC	2 cut(s)	300, 500
Eco57I	CTGAAG	2 cut(s)	327, 852
EcoO109I	RGGNCCY	1 cut(s)	300
EcoRII	CCWGG	3 cut(s)	766, 896, 1266
EcoT14I	CCWWGG	1 cut(s)	1089
ErhI	CCWWGG	1 cut(s)	1089
Esp3I	CGTCTC	1 cut(s)	267
FaeI	CATG	4 cut(s)	494, 700, 814, 1330
FaqI	GGGAC	1 cut(s)	286
FatI	CATG	4 cut(s)	490, 696, 810, 1326
FauI	CCCGC	2 cut(s)	473, 660
FbaI	TGATCA	2 cut(s)	1150, 1234
Fnu4HI	GCNGC	9 cut(s)	478, 556, 559, 959, 968, 1034, 1163, 1175, 1178
FokI	GGATG	4 cut(s)	509, 1106, 1186, 1289
Fsp4HI	GCNGC	9 cut(s)	478, 556, 559, 959, 968, 1034, 1163, 1175, 1178
GluI	GCNGC	9 cut(s)	478, 556, 559, 959, 968, 1034, 1163, 1175, 1178
GsaI	CCCAGC	1 cut(s)	447
HaeIII	GGCC	4 cut(s)	108, 477, 994, 1088
HgaI	GACGC	2 cut(s)	36, 891
Hin1I	GRCGYC	2 cut(s)	47, 902
Hin1II	CATG	4 cut(s)	494, 700, 814, 1330
HindIII	AAGCTT	2 cut(s)	167, 881
HinfI	GANTC	4 cut(s)	4, 227, 823, 1356
HphI	GGTGA	4 cut(s)	130, 1160, 1184, 1298
Hpy166II	GTNNAC	2 cut(s)	138, 544
Hpy188I	TCNGA	2 cut(s)	114, 801
Hpy188III	TCNNGA	1 cut(s)	427
Hpy8I	GTNNAC	2 cut(s)	138, 544
HpyAV	CCTTC	3 cut(s)	302, 851, 1276
HpyCH4III	ACNGT	5 cut(s)	142, 151, 190, 376, 1113
HpyCH4IV	ACGT	1 cut(s)	715
HpyCH4V	TGCA	8 cut(s)	296, 404, 461, 515, 712, 1000, 1108, 1341
HpyF3I	CTNAG	2 cut(s)	15, 1245
HpySE526I	ACGT	1 cut(s)	715
Hsp92I	GRCGYC	2 cut(s)	47, 902
Hsp92II	CATG	4 cut(s)	494, 700, 814, 1330
KflI	GGGWCCC	1 cut(s)	300
Ksp22I	TGATCA	2 cut(s)	1150, 1234
KspI	CCGCGG	1 cut(s)	481
Kzo9I	GATC	5 cut(s)	603, 869, 1150, 1234, 1321
LmnI	GCTCC	4 cut(s)	162, 211, 566, 1270
Lsp1109I	GCAGC	7 cut(s)	545, 567, 970, 979, 1174, 1186, 1189
LweI	GCATC	4 cut(s)	430, 502, 657, 1084
MaeII	ACGT	1 cut(s)	715
MaeIII	GTNAC	6 cut(s)	22, 72, 239, 448, 692, 1190
MalI	GATC	5 cut(s)	605, 871, 1152, 1236, 1323
MboI	GATC	5 cut(s)	603, 869, 1150, 1234, 1321
MboII	GAAGA	6 cut(s)	249, 442, 521, 729, 845, 866
MfeI	CAATTG	3 cut(s)	456, 729, 1041
MflI	RGATCY	2 cut(s)	603, 1321
MlsI	TGGCCA	1 cut(s)	1088
MluCI	AATT	8 cut(s)	40, 456, 470, 518, 729, 915, 1041, 1360
MluNI	TGGCCA	1 cut(s)	1088
MlyI	GAGTC	2 cut(s)	13, 221
MmeI	TCCRAC	3 cut(s)	298, 631, 851
MnlI	CCTC	7 cut(s)	187, 192, 337, 458, 575, 807, 1018
Mox20I	TGGCCA	1 cut(s)	1088
MroXI	GAANNNNTTC	1 cut(s)	256
MscI	TGGCCA	1 cut(s)	1088
MseI	TTAA	1 cut(s)	1302
MslI	CAYNNNNRTG	4 cut(s)	327, 495, 618, 1341
Msp20I	TGGCCA	1 cut(s)	1088
MspA1I	CMGCKG	3 cut(s)	98, 480, 558
MspR9I	CCNGG	3 cut(s)	768, 898, 1268
MunI	CAATTG	3 cut(s)	456, 729, 1041
Mva1269I	GAATGC	3 cut(s)	777, 931, 976
MvaI	CCWGG	3 cut(s)	768, 898, 1268
MvnI	CGCG	1 cut(s)	480
NdeII	GATC	5 cut(s)	603, 869, 1150, 1234, 1321
NlaIII	CATG	4 cut(s)	494, 700, 814, 1330
NlaIV	GGNNCC	2 cut(s)	301, 302
NmeAIII	GCCGAG	1 cut(s)	1151
NmuCI	GTSAC	3 cut(s)	72, 448, 1190
NspI	RCATGY	1 cut(s)	700
NspV	TTCGAA	1 cut(s)	524
PciI	ACATGT	1 cut(s)	696
PcsI	WCGNNNNNNNCGW	1 cut(s)	110
PctI	GAATGC	3 cut(s)	777, 931, 976
PdmI	GAANNNNTTC	1 cut(s)	256
PfeI	GAWTC	2 cut(s)	823, 1356
PfoI	TCCNGGA	2 cut(s)	766, 1266
PkrI	GCNGC	9 cut(s)	479, 557, 560, 960, 969, 1035, 1164, 1176, 1179
PleI	GAGTC	2 cut(s)	12, 221
PpsI	GAGTC	2 cut(s)	12, 221
PpuMI	RGGWCCY	1 cut(s)	300
PscI	ACATGT	1 cut(s)	696
Psp5II	RGGWCCY	1 cut(s)	300
Psp6I	CCWGG	3 cut(s)	766, 896, 1266
PspFI	CCCAGC	1 cut(s)	443
PspGI	CCWGG	3 cut(s)	766, 896, 1266
PspN4I	GGNNCC	2 cut(s)	301, 302
PspPI	GGNCC	4 cut(s)	106, 300, 475, 500
PspPPI	RGGWCCY	1 cut(s)	300
PsuI	RGATCY	2 cut(s)	603, 1321
PvuII	CAGCTG	1 cut(s)	558
RsaI	GTAC	1 cut(s)	727
RsaNI	GTAC	1 cut(s)	726
RseI	CAYNNNNRTG	4 cut(s)	327, 495, 618, 1341
SacII	CCGCGG	1 cut(s)	481
SaqAI	TTAA	1 cut(s)	1302
SatI	GCNGC	9 cut(s)	478, 556, 559, 959, 968, 1034, 1163, 1175, 1178
Sau3AI	GATC	5 cut(s)	603, 869, 1150, 1234, 1321
Sau96I	GGNCC	4 cut(s)	106, 300, 475, 500
SchI	GAGTC	2 cut(s)	13, 221
ScrFI	CCNGG	3 cut(s)	768, 898, 1268
SfaNI	GCATC	4 cut(s)	430, 502, 657, 1084
Sfr303I	CCGCGG	1 cut(s)	481
SfuI	TTCGAA	1 cut(s)	524
SgrBI	CCGCGG	1 cut(s)	481
SinI	GGWCC	2 cut(s)	300, 500
SmiMI	CAYNNNNRTG	4 cut(s)	327, 495, 618, 1341
Sse9I	AATT	8 cut(s)	40, 456, 470, 518, 729, 915, 1041, 1360
SsiI	CCGC	5 cut(s)	98, 478, 480, 653, 1034
StyD4I	CCNGG	3 cut(s)	766, 896, 1266
StyI	CCWWGG	1 cut(s)	1089
TaaI	ACNGT	5 cut(s)	142, 151, 190, 376, 1113
TaiI	ACGT	1 cut(s)	718
TaqI	TCGA	1 cut(s)	524
TasI	AATT	8 cut(s)	40, 456, 470, 518, 729, 915, 1041, 1360
TauI	GCSGC	2 cut(s)	480, 1036
TfiI	GAWTC	2 cut(s)	823, 1356
Tru1I	TTAA	1 cut(s)	1302
Tru9I	TTAA	1 cut(s)	1302
TscAI	CASTG	6 cut(s)	81, 156, 193, 825, 1249, 1348
TseFI	GTSAC	3 cut(s)	72, 448, 1190
TseI	GCWGC	7 cut(s)	555, 558, 958, 967, 1162, 1174, 1177
Tsp45I	GTSAC	3 cut(s)	72, 448, 1190
TspDTI	ATGAA	3 cut(s)	74, 368, 765
TspRI	CASTG	6 cut(s)	81, 156, 193, 825, 1249, 1348
VpaK11BI	GGWCC	2 cut(s)	300, 500
XapI	RAATTY	3 cut(s)	40, 518, 915
XceI	RCATGY	1 cut(s)	700
XcmI	CCANNNNNNNNNTGG	2 cut(s)	641, 1274
XmnI	GAANNNNTTC	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.