Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003391

Physical Location & Seq

Genomic Coordinates Reverse (-)

84809640 .. 84812530

Gene Structure 2891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG624900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1578 bp

ATGCTGAGGAAATGGGTTTCTCTGGTTCTGATCTTTGTGATTCTCTCTGGGGACTTTTCATCAGCTTCAGCCACTCCCCCTCCTGCAAAAATTGTAACTGGGATTGTCTCCAATGTGGTATCTGCTCTTGTTAAATGGCTCTGGTCACTGAAATCCAACACCAAAACCAGCACAGCGGTTTCTGGCCGTTCAATGGTGAAATTTGAGGGTGGATATACTGTAGATACGGTTTTCGATGGAAGTAAGCTTGGGATTGAACCACACTCCATTGAAGTATCCCCAAGTGGAGAGCTTCTGGTTTTGGATTCTGAAAATAGTAACATCTACAGGATTTCAACGCCATTATCTAAATATAGCCGACCCAAGCTCATAGCTGGGTCACCTGAAGGCTACTCGGGGCATGTAGATGGGAGGACAAGAGAAGCAAGAATGAACCACCCCAAAGGAATGACTGTGGATGACAGAGGAAATATCTATATTGCAGACACAATGAATATGGCTATCAGGAAGATAAGTGATGCTGGTGTTACTACTATTGCTGGTGGAAAATGGGGCCGAGGAGGTGGTCATGTTGATGGTCCAAGTGAAGATGCAAAGTTTTCTAGTGATTTTGATGTGGTTTATATTGGAAGTAGCTGCTCTCTTTTGGTTATAGACAGAGGAAACCAGGCAATTCGGGAGATCCAACTCCACTATGATGACTGTGCTGACCACCATGATGGTAGTTTCCATTTAGGAGTAGCAGTGCTGCTTGCAGCTGCATTCTTTGGTTACATGCTGGCATTGTTGCAGCGTCGAGTGCAAGCAATATTTTCATCAAAAGATGACCAAACAACTGCTGCTATAAAGAGAGCTGCATCAATGGCTCAATACCAGATGCCTCCTAAATCTGTTAGGCCCCCTTTAATTCCCACTGAATATGAACCCGAAAAACGAGATGATGGCTTCTTTGGTTCACTTGGGAAGATGTTTGTCAATACTGGCTCATCTGTGGGTGAAATCGTTGGGGGATTGTTTTCAGGTAGAAGAAAGTCACTCCATTATCAGATTCAACAGCAGTATCATCAAACTCACAGAAGTTCAAATCCATGGCCTGTGCAAGACAGCTTTGTGATTCCAGATGATGAGCCTCCTCCACCATCCATAGAGACCAGAACCCCAACTCCAAAGAAAACCTACCCAGTCATGACTAAAGAACTGGAAATCCCCCGCCATTCTAAGCAAAGTCGAGCCTACCATAATTCATGGGATGGTGAATATAACCAACAGCAACAACATCAGATGCAAATGCAGATGCAGCAACAGCAACAGCAACAACACCAGATGCATTTGCAGATGCAGCGCCAGCAGCAACAACAGCAGCAGCAGCATCATCATAGGCATTACTCATCCAACCCAAAGACATACTATGAGAGGAGCAGTGAGACTAATGAGATTGTGTTTGGGGCGGTTCAAGAACAAGGTGGACGTCGTGAAGCTGTGGTGATAAAGGCTGTAGACTATTCTGACCCTACATATAATCACTACAACATTCGACCACGAGGCAATTATACTGATTATAGTTCCCCTGGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

525

Amino Acids

58.84

Weight (kDa)

8.52

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70280 AT1G70280
fragaria_vesca	FvH4_4g34810 FvH4_4g34810 FvH4_6g50490 FvH4_6g50490
malus_domestica	MD09G1036000.v1.1 MD13G1089500.v1.1 MD16G1089700.v1.1 MD17G1037600.v1.1
prunus_persica	Prupe.1G256300_v2.0.a1 Prupe.3G281800_v2.0.a1 Prupe.3G281800_v2.0.a1
pyrus_communis	pycom111g02890 pycom13g07800 pycom16g07680 pycom17g03370
rosa_chinensis	RchiOBHm_Chr2g0170891 RchiOBHm_Chr4g0444151
rosa_laevigata	RLG00000021991
rosa_multiflora	Rmu_sc0009938.1_g000002 Rmu_sc0012638.1_g000012
rosa_roxburghii	Rroxscaffold_2G00080990 Rroxscaffold_5G00384740
rosa_rugosa	Rorug02G0552200 Rorug04G0350500
rosa_samantha	Rh2AG624900 Rh2BG635600 Rh2CG604300 Rh2DG647200 Rh4AG411100 Rh4BG422500 Rh4CG436900 Rh4DG417800
rosa_wichuraiana	Rw2G051760 Rw4G035320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1471
AccI	GTMKAC	1 cut(s)	1497
AciI	CCGC	3 cut(s)	176, 1210, 1448
AclWI	GGATC	1 cut(s)	676
AcoI	YGGCCR	1 cut(s)	184
AcsI	RAATTY	1 cut(s)	200
AcuI	CTGAAG	2 cut(s)	51, 405
AcyI	GRCGYC	1 cut(s)	1468
AfiI	CCNNNNNNNGG	1 cut(s)	193
AgsI	TTSAA	7 cut(s)	192, 257, 272, 336, 1052, 1083, 1454
AjnI	CCWGG	2 cut(s)	666, 1567
AloI	GAACNNNNNNTCC	4 cut(s)	1147, 1179, 1188, 1220
Alw26I	GTCTC	3 cut(s)	112, 1142, 1418
AlwI	GGATC	1 cut(s)	676
Ama87I	CYCGRG	1 cut(s)	394
AoxI	GGCC	4 cut(s)	184, 553, 896, 1091
ApoI	RAATTY	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	1344
AspS9I	GGNCC	3 cut(s)	553, 578, 897
AsuHPI	GGTGA	5 cut(s)	208, 372, 1007, 1265, 1495
AvaI	CYCGRG	1 cut(s)	394
AvaII	GGWCC	1 cut(s)	578
BaeI	ACNNNNGTAYC	2 cut(s)	1043, 1076
BauI	CACGAG	1 cut(s)	1539
BbvCI	CCTCAGC	1 cut(s)	5
BccI	CCATC	7 cut(s)	230, 401, 569, 713, 935, 1147, 1244
BceAI	ACGGC	1 cut(s)	171
BciT130I	CCWGG	2 cut(s)	668, 1569
BciVI	GTATCC	1 cut(s)	286
BcoDI	GTCTC	3 cut(s)	112, 1142, 1418
BfaI	CTAG	1 cut(s)	603
BfmI	CTRYAG	3 cut(s)	219, 325, 1494
BfoI	RGCGCY	1 cut(s)	1345
BfuI	GTATCC	1 cut(s)	286
Bme1390I	CCNGG	2 cut(s)	668, 1569
Bme18I	GGWCC	1 cut(s)	578
BmeT110I	CYCGRG	1 cut(s)	394
BmgT120I	GGNCC	3 cut(s)	553, 578, 897
BmiI	GGNNCC	2 cut(s)	554, 899
BmrFI	CCNGG	2 cut(s)	668, 1569
BmrI	ACTGGG	2 cut(s)	108, 1175
BmsI	GCATC	9 cut(s)	508, 580, 866, 867, 1272, 1284, 1314, 1326, 1378
BmuI	ACTGGG	2 cut(s)	108, 1175
Bpu10I	CCTNAGC	1 cut(s)	5
BsaHI	GRCGYC	1 cut(s)	1468
BsaI	GGTCTC	1 cut(s)	1142
BsaJI	CCNNGG	3 cut(s)	556, 1088, 1567
BsaXI	ACNNNNNCTCC	6 cut(s)	64, 94, 729, 759, 1147, 1177
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse1I	ACTGG	4 cut(s)	103, 985, 1181, 1203
BseBI	CCWGG	2 cut(s)	668, 1569
BseDI	CCNNGG	3 cut(s)	556, 1088, 1567
BseGI	GGATG	4 cut(s)	463, 1139, 1255, 1388
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseNI	ACTGG	4 cut(s)	103, 985, 1181, 1203
BseRI	GAGGAG	3 cut(s)	573, 1122, 1429
BseYI	CCCAGC	1 cut(s)	374
BshFI	GGCC	4 cut(s)	186, 555, 898, 1093
BsiHKCI	CYCGRG	1 cut(s)	394
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	193
BsmAI	GTCTC	3 cut(s)	112, 1142, 1418
BsmFI	GGGAC	1 cut(s)	65
BsmI	GAATGC	1 cut(s)	761
BsnI	GGCC	4 cut(s)	186, 555, 898, 1093
Bso31I	GGTCTC	1 cut(s)	1142
BsoBI	CYCGRG	1 cut(s)	394
Bsp143I	GATC	2 cut(s)	30, 681
Bsp19I	CCATGG	1 cut(s)	1088
BspACI	CCGC	3 cut(s)	176, 1210, 1448
BspANI	GGCC	4 cut(s)	186, 555, 898, 1093
BspHI	TCATGA	1 cut(s)	1185
BspLI	GGNNCC	2 cut(s)	554, 899
BspPI	GGATC	1 cut(s)	676
BspTNI	GGTCTC	1 cut(s)	1142
BsrI	ACTGG	4 cut(s)	103, 985, 1181, 1203
BssECI	CCNNGG	3 cut(s)	556, 1088, 1567
BssMI	GATC	2 cut(s)	30, 681
BssNI	GRCGYC	1 cut(s)	1468
BssSI	CACGAG	1 cut(s)	1539
BssT1I	CCWWGG	1 cut(s)	1088
Bst2BI	CACGAG	1 cut(s)	1539
Bst2UI	CCWGG	2 cut(s)	668, 1569
Bst4CI	ACNGT	4 cut(s)	220, 229, 454, 704
BstACI	GRCGYC	1 cut(s)	1468
BstC8I	GCNNGC	4 cut(s)	753, 780, 804, 1346
BstDEI	CTNAG	2 cut(s)	5, 1218
BstDSI	CCRYGG	1 cut(s)	1088
BstEII	GGTNACC	1 cut(s)	378
BstF5I	GGATG	4 cut(s)	463, 1139, 1255, 1388
BstH2I	RGCGCY	1 cut(s)	1345
BstHHI	GCGC	1 cut(s)	1344
BstKTI	GATC	2 cut(s)	33, 684
BstMAI	GTCTC	3 cut(s)	112, 1142, 1418
BstMBI	GATC	2 cut(s)	30, 681
BstMWI	GCNNNNNNNGC	9 cut(s)	799, 863, 1297, 1303, 1339, 1345, 1348, 1357, 1366
BstNI	CCWGG	2 cut(s)	668, 1569
BstNSI	RCATGY	2 cut(s)	404, 778
BstPI	GGTNACC	1 cut(s)	378
BstSCI	CCNGG	2 cut(s)	666, 1567
BstSFI	CTRYAG	3 cut(s)	219, 325, 1494
BstX2I	RGATCY	1 cut(s)	681
BstXI	CCANNNNNNTGG	1 cut(s)	719
BstYI	RGATCY	1 cut(s)	681
BsuI	GTATCC	1 cut(s)	286
BsuRI	GGCC	4 cut(s)	186, 555, 898, 1093
BtgI	CCRYGG	1 cut(s)	1088
BtsCI	GGATG	4 cut(s)	463, 1139, 1255, 1388
BtsI	GCAGTG	2 cut(s)	750, 1426
BtsIMutI	CAGTG	4 cut(s)	146, 750, 912, 1426
Cac8I	GCNNGC	4 cut(s)	753, 780, 804, 1346
CciI	TCATGA	1 cut(s)	1185
CfoI	GCGC	1 cut(s)	1344
Cfr13I	GGNCC	3 cut(s)	553, 578, 897
CseI	GACGC	1 cut(s)	782
CviAII	CATG	7 cut(s)	401, 569, 716, 775, 1089, 1186, 1245
DdeI	CTNAG	2 cut(s)	5, 1218
DpnI	GATC	2 cut(s)	32, 683
DpnII	GATC	2 cut(s)	30, 681
EaeI	YGGCCR	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	1088
Eco31I	GGTCTC	1 cut(s)	1142
Eco47I	GGWCC	1 cut(s)	578
Eco57I	CTGAAG	2 cut(s)	51, 405
Eco88I	CYCGRG	1 cut(s)	394
Eco91I	GGTNACC	1 cut(s)	378
EcoO109I	RGGNCCY	1 cut(s)	897
EcoO65I	GGTNACC	1 cut(s)	378
EcoRII	CCWGG	2 cut(s)	666, 1567
EcoT14I	CCWWGG	1 cut(s)	1088
EcoT22I	ATGCAT	1 cut(s)	1329
ErhI	CCWWGG	1 cut(s)	1088
FaeI	CATG	7 cut(s)	404, 572, 719, 778, 1092, 1189, 1248
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	7 cut(s)	400, 568, 715, 774, 1088, 1185, 1244
FauI	CCCGC	1 cut(s)	1217
FblI	GTMKAC	1 cut(s)	1497
FokI	GGATG	4 cut(s)	470, 1126, 1262, 1375
FspBI	CTAG	1 cut(s)	603
GlaI	GCGC	1 cut(s)	1343
GsaI	CCCAGC	1 cut(s)	378
HaeII	RGCGCY	1 cut(s)	1345
HaeIII	GGCC	4 cut(s)	186, 555, 898, 1093
HgaI	GACGC	1 cut(s)	782
HhaI	GCGC	1 cut(s)	1344
Hin1I	GRCGYC	1 cut(s)	1468
Hin1II	CATG	7 cut(s)	404, 572, 719, 778, 1092, 1189, 1248
Hin6I	GCGC	1 cut(s)	1342
HinP1I	GCGC	1 cut(s)	1342
HindIII	AAGCTT	1 cut(s)	245
HinfI	GANTC	4 cut(s)	40, 305, 1048, 1114
HphI	GGTGA	5 cut(s)	208, 372, 1007, 1265, 1495
Hpy166II	GTNNAC	3 cut(s)	956, 1466, 1498
Hpy188I	TCNGA	5 cut(s)	30, 310, 1047, 1281, 1507
Hpy188III	TCNNGA	6 cut(s)	505, 677, 1118, 1186, 1454, 1472
Hpy8I	GTNNAC	3 cut(s)	956, 1466, 1498
Hpy99I	CGWCG	2 cut(s)	798, 1473
HpyAV	CCTTC	1 cut(s)	380
HpyCH4III	ACNGT	4 cut(s)	220, 229, 454, 704
HpyCH4IV	ACGT	1 cut(s)	1468
HpyF10VI	GCNNNNNNNGC	9 cut(s)	799, 863, 1297, 1303, 1339, 1345, 1348, 1357, 1366
HpyF3I	CTNAG	2 cut(s)	5, 1218
HpySE526I	ACGT	1 cut(s)	1468
Hsp92I	GRCGYC	1 cut(s)	1468
Hsp92II	CATG	7 cut(s)	404, 572, 719, 778, 1092, 1189, 1248
HspAI	GCGC	1 cut(s)	1342
Kzo9I	GATC	2 cut(s)	30, 681
LmnI	GCTCC	1 cut(s)	1416
LweI	GCATC	9 cut(s)	508, 580, 866, 867, 1272, 1284, 1314, 1326, 1378
MaeI	CTAG	1 cut(s)	603
MaeII	ACGT	1 cut(s)	1468
MaeIII	GTNAC	7 cut(s)	94, 144, 317, 378, 526, 770, 1032
MalI	GATC	2 cut(s)	32, 683
MboI	GATC	2 cut(s)	30, 681
MboII	GAAGA	4 cut(s)	520, 599, 976, 1038
MflI	RGATCY	1 cut(s)	681
MluCI	AATT	6 cut(s)	90, 200, 672, 906, 1240, 1546
MmeI	TCCRAC	3 cut(s)	180, 709, 1416
Mph1103I	ATGCAT	1 cut(s)	1329
MseI	TTAA	2 cut(s)	132, 905
MslI	CAYNNNNRTG	4 cut(s)	405, 573, 696, 717
MspA1I	CMGCKG	2 cut(s)	176, 758
MspR9I	CCNGG	2 cut(s)	668, 1569
Mva1269I	GAATGC	1 cut(s)	761
MvaI	CCWGG	2 cut(s)	668, 1569
MwoI	GCNNNNNNNGC	9 cut(s)	799, 863, 1297, 1303, 1339, 1345, 1348, 1357, 1366
NcoI	CCATGG	1 cut(s)	1088
NdeII	GATC	2 cut(s)	30, 681
NlaIII	CATG	7 cut(s)	404, 572, 719, 778, 1092, 1189, 1248
NlaIV	GGNNCC	2 cut(s)	554, 899
NmeAIII	GCCGAG	1 cut(s)	581
NmuCI	GTSAC	3 cut(s)	144, 378, 1032
NsiI	ATGCAT	1 cut(s)	1329
NspI	RCATGY	2 cut(s)	404, 778
PagI	TCATGA	1 cut(s)	1185
PctI	GAATGC	1 cut(s)	761
PfeI	GAWTC	4 cut(s)	40, 305, 1048, 1114
Psp6I	CCWGG	2 cut(s)	666, 1567
PspEI	GGTNACC	1 cut(s)	378
PspFI	CCCAGC	1 cut(s)	374
PspGI	CCWGG	2 cut(s)	666, 1567
PspN4I	GGNNCC	2 cut(s)	554, 899
PspPI	GGNCC	3 cut(s)	553, 578, 897
PsuI	RGATCY	1 cut(s)	681
PvuII	CAGCTG	1 cut(s)	758
RseI	CAYNNNNRTG	4 cut(s)	405, 573, 696, 717
SaqAI	TTAA	2 cut(s)	132, 905
Sau3AI	GATC	2 cut(s)	30, 681
Sau96I	GGNCC	3 cut(s)	553, 578, 897
ScrFI	CCNGG	2 cut(s)	668, 1569
SfaNI	GCATC	9 cut(s)	508, 580, 866, 867, 1272, 1284, 1314, 1326, 1378
SfcI	CTRYAG	3 cut(s)	219, 325, 1494
SinI	GGWCC	1 cut(s)	578
SmiMI	CAYNNNNRTG	4 cut(s)	405, 573, 696, 717
Sse9I	AATT	6 cut(s)	90, 200, 672, 906, 1240, 1546
SsiI	CCGC	3 cut(s)	176, 1210, 1448
SspI	AATATT	1 cut(s)	810
SspMI	CTAG	1 cut(s)	603
StyD4I	CCNGG	2 cut(s)	666, 1567
StyI	CCWWGG	1 cut(s)	1088
TaaI	ACNGT	4 cut(s)	220, 229, 454, 704
TaiI	ACGT	1 cut(s)	1471
TaqI	TCGA	4 cut(s)	234, 796, 1228, 1534
TasI	AATT	6 cut(s)	90, 200, 672, 906, 1240, 1546
TfiI	GAWTC	4 cut(s)	40, 305, 1048, 1114
Tru1I	TTAA	2 cut(s)	132, 905
Tru9I	TTAA	2 cut(s)	132, 905
TscAI	CASTG	4 cut(s)	153, 750, 919, 1426
TseFI	GTSAC	3 cut(s)	144, 378, 1032
Tsp45I	GTSAC	3 cut(s)	144, 378, 1032
TspDTI	ATGAA	6 cut(s)	48, 446, 506, 804, 936, 1233
TspRI	CASTG	4 cut(s)	153, 750, 919, 1426
VpaK11BI	GGWCC	1 cut(s)	578
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	2 cut(s)	404, 778
XmiI	GTMKAC	1 cut(s)	1497
XspI	CTAG	1 cut(s)	603
ZraI	GACGTC	1 cut(s)	1469
Zsp2I	ATGCAT	1 cut(s)	1329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.