Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003391

Physical Location & Seq

Genomic Coordinates Forward (+)

2734592 .. 2738199

Gene Structure 3608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1037600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

ATGGTGAGGAATTGGGTTGCATTGCTTCTGATTTTTCTTCTTCTCTCTGGGGATTTCTCATCAGGAGTAGCTGCCTCACCTCCTGCAAAAATTGTAACTGGGATTGTCTCCAATGTGGTTTCTGCTCTTGTCAAATGGCTCTGGTCATTGAAATCCACCACAAAAACCAGTTCAGCTGTTCCCAGCCGTTCGATGATGAAATTTGAGGGTGGATACACCGTGGATACGGTGTTTGATGGAAGCAAGCTCGGAATTGAACCACACTCAGTTGAAGTGTCCCCAAGTGGAGAGCTTCTGGTTTTGGACTCCGAAAATAGTAACATCTACAAGATCTCAATGCCACTGTCTCGATATAGCCGACCCAAGCTGATTTCTGGATCACCTGAGGGGTACTCTGGGCATGTGGACGGGAGGCCAAGAGAAGCAAGAATGAACCACCCGAAAGGGCTAACTGTGGATGATAGAGGAAATATTTATATCGCAGACACAATGAATATGGCTATCAGGAAGATAAGTGATGCCGGGGTTACGACTATTGCTGGTGGACAATGGAGCAGAGGAGGTGGTCATGTTGATGGTCCAAGTGAAGACGCAAAGTTTTCTACTGATTTTGATGTGGTATACGTAGGCAGCAGCTGCTCTCTTTTGGTTATAGACAGAGGAAACCAGGCGATTCGGGAGATCCAACTCCATTATGATGACTGTAATGACCGCTACGATGGAACTTTCGGTTTAGGAATAGCAATGCTGATTGCAGCTGCATTCTTCGGTTACATGTTGGCATTGCTGCAGCGTAGGGTGCAATCAATGTTTTCGTCAAATGATGCAAGTTATTTACATGACCAAAGAACTCCTATACATAGGGCTGCAACAGTAGCACCATATCAGATGACTCCGAAATCCGCCAGGCCGCCTTTAATTCCCAATGAAGATGAACCCGAGAAACTAGATGACAGCTTCTTTGGTTCACTAGGAAAGATTGTTCTCAACACTGGCTCGTCTGTGGCTGAAATCTTTGGGGGAGTATTTACGGGCTTTAGAAGTAAGCCCCGACAATATCACATACAGCAGCAGTATCATCAAGCTAATGAACATTCAAATGCTTGGCCCTTGCAAGACAGCTATGTTATTCCAGACGAAGACGAGCCTCCATCAATAGAAACCAGATCCCCAACCCCGAATAAAACCTATCCTTACATGACCAAAGACCTAGAGAAGTCTCACCATTCGAAGCAAAGTCAAGCCTACTATAATTCATGGGAGGGTGAACATCAGCAACAACAACAACAACAGCAACAACTTCAGATGCAGCTGCAGCAGCAGCAACGACACCATATGCAGATGCAGCAGCATCAGCAACAGCAGCAGCAGCAGCAACGACACCATATGCAGATGCAAATGCAGATGCAGCAGCATCAGCAACAGCAGCAGCATCACAGGCATTACTCAACAAACCCAAATACATACTACGAGAAGAGCAGCGAGACAAATGAGATTGTGTTTGGGGCGGTTCAAGAACATGATGGACGCCGTGAAGCAGTGGTGATAAAGTCAGTAGACTATGGAGATTCTAGGTATAACCACCACAACATTCGACAGCGTTTCAATTATGTGGGTTATAATTCCTCTGGTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

546

Amino Acids

61.7

Weight (kDa)

6.58

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70280 AT1G70280
fragaria_vesca	FvH4_4g34810 FvH4_4g34810 FvH4_6g50490 FvH4_6g50490
malus_domestica	MD09G1036000.v1.1 MD13G1089500.v1.1 MD16G1089700.v1.1 MD17G1037600.v1.1
prunus_persica	Prupe.1G256300_v2.0.a1 Prupe.3G281800_v2.0.a1 Prupe.3G281800_v2.0.a1
pyrus_communis	pycom111g02890 pycom13g07800 pycom16g07680 pycom17g03370
rosa_chinensis	RchiOBHm_Chr2g0170891 RchiOBHm_Chr4g0444151
rosa_laevigata	RLG00000021991
rosa_multiflora	Rmu_sc0009938.1_g000002 Rmu_sc0012638.1_g000012
rosa_roxburghii	Rroxscaffold_2G00080990 Rroxscaffold_5G00384740
rosa_rugosa	Rorug02G0552200 Rorug04G0350500
rosa_samantha	Rh2AG624900 Rh2BG635600 Rh2CG604300 Rh2DG647200 Rh4AG411100 Rh4BG422500 Rh4CG436900 Rh4DG417800
rosa_wichuraiana	Rw2G051760 Rw4G035320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1620
AccI	GTMKAC	2 cut(s)	621, 1557
AciI	CCGC	4 cut(s)	712, 903, 911, 1508
AclWI	GGATC	3 cut(s)	385, 676, 1161
AcsI	RAATTY	1 cut(s)	200
AcuI	CTGAAG	1 cut(s)	1286
AcyI	GRCGYC	1 cut(s)	1528
AfaI	GTAC	1 cut(s)	392
AflIII	ACRYGT	1 cut(s)	774
AgsI	TTSAA	6 cut(s)	151, 257, 272, 1098, 1514, 1606
AjnI	CCWGG	2 cut(s)	666, 905
AloI	GAACNNNNNNTCC	2 cut(s)	966, 998
Alw26I	GTCTC	4 cut(s)	112, 351, 1224, 1478
AlwI	GGATC	3 cut(s)	385, 676, 1161
AlwNI	CAGNNNCTG	1 cut(s)	636
Ama87I	CYCGRG	1 cut(s)	938
AoxI	GGCC	3 cut(s)	413, 908, 1106
ApoI	RAATTY	1 cut(s)	200
ArsI	GACNNNNNNTTYG	2 cut(s)	944, 976
AspS9I	GGNCC	2 cut(s)	578, 1107
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	6 cut(s)	16, 69, 372, 1214, 1277, 1555
AsuII	TTCGAA	1 cut(s)	1229
AvaI	CYCGRG	1 cut(s)	938
AvaII	GGWCC	1 cut(s)	578
AxyI	CCTNAGG	1 cut(s)	384
BbsI	GAAGAC	2 cut(s)	594, 1146
BccI	CCATC	5 cut(s)	230, 569, 713, 1159, 1517
BceAI	ACGGC	2 cut(s)	171, 1515
BciT130I	CCWGG	2 cut(s)	668, 907
BciVI	GTATCC	2 cut(s)	206, 217
BcnI	CCSGG	1 cut(s)	523
BcoDI	GTCTC	4 cut(s)	112, 351, 1224, 1478
BfaI	CTAG	4 cut(s)	947, 971, 1211, 1572
BfmI	CTRYAG	2 cut(s)	788, 1313
BfuI	GTATCC	2 cut(s)	206, 217
BglII	AGATCT	1 cut(s)	330
Bme1390I	CCNGG	3 cut(s)	523, 668, 907
Bme18I	GGWCC	1 cut(s)	578
BmeT110I	CYCGRG	1 cut(s)	938
BmgT120I	GGNCC	2 cut(s)	578, 1107
BmrFI	CCNGG	3 cut(s)	523, 668, 907
BmrI	ACTGGG	1 cut(s)	108
BmsI	GCATC	9 cut(s)	508, 814, 1296, 1332, 1360, 1383, 1395, 1423, 1441
BmuI	ACTGGG	1 cut(s)	108
BpiI	GAAGAC	2 cut(s)	594, 1146
BplI	GAGNNNNNCTC	2 cut(s)	377, 409
Bpu14I	TTCGAA	1 cut(s)	1229
BpuMI	CCSGG	1 cut(s)	523
BsaAI	YACGTR	1 cut(s)	625
BsaHI	GRCGYC	1 cut(s)	1528
BsaJI	CCNNGG	2 cut(s)	219, 522
Bse1I	ACTGG	3 cut(s)	103, 168, 997
Bse21I	CCTNAGG	1 cut(s)	384
Bse3DI	GCAATG	3 cut(s)	20, 750, 782
BseBI	CCWGG	2 cut(s)	668, 907
BseDI	CCNNGG	2 cut(s)	219, 522
BseGI	GGATG	1 cut(s)	463
BseMI	GCAATG	3 cut(s)	20, 750, 782
BseMII	CTCAG	2 cut(s)	279, 375
BseNI	ACTGG	3 cut(s)	103, 168, 997
BseRI	GAGGAG	1 cut(s)	573
BseYI	CCCAGC	1 cut(s)	182
BshFI	GGCC	3 cut(s)	415, 910, 1108
BsiHKCI	CYCGRG	1 cut(s)	938
BsiSI	CCGG	1 cut(s)	522
BslFI	GGGAC	1 cut(s)	262
BsmAI	GTCTC	4 cut(s)	112, 351, 1224, 1478
BsmFI	GGGAC	1 cut(s)	262
BsmI	GAATGC	1 cut(s)	761
BsnI	GGCC	3 cut(s)	415, 910, 1108
BsoBI	CYCGRG	1 cut(s)	938
Bsp119I	TTCGAA	1 cut(s)	1229
Bsp143I	GATC	4 cut(s)	330, 377, 681, 1166
BspACI	CCGC	4 cut(s)	712, 903, 911, 1508
BspANI	GGCC	3 cut(s)	415, 910, 1108
BspCNI	CTCAG	2 cut(s)	278, 376
BspMAI	CTGCAG	2 cut(s)	792, 1317
BspPI	GGATC	3 cut(s)	385, 676, 1161
BspQI	GCTCTTC	1 cut(s)	1469
BspT104I	TTCGAA	1 cut(s)	1229
BsrDI	GCAATG	3 cut(s)	20, 750, 782
BsrI	ACTGG	3 cut(s)	103, 168, 997
BssECI	CCNNGG	2 cut(s)	219, 522
BssMI	GATC	4 cut(s)	330, 377, 681, 1166
BssNAI	GTATAC	1 cut(s)	622
BssNI	GRCGYC	1 cut(s)	1528
Bst1107I	GTATAC	1 cut(s)	622
Bst2UI	CCWGG	2 cut(s)	668, 907
Bst4CI	ACNGT	6 cut(s)	220, 229, 345, 454, 704, 874
Bst6I	CTCTTC	1 cut(s)	1469
BstACI	GRCGYC	1 cut(s)	1528
BstAPI	GCANNNNNTGC	1 cut(s)	636
BstBAI	YACGTR	1 cut(s)	625
BstBI	TTCGAA	1 cut(s)	1229
BstC8I	GCNNGC	1 cut(s)	245
BstDEI	CTNAG	2 cut(s)	265, 384
BstDSI	CCRYGG	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	463
BstKTI	GATC	4 cut(s)	333, 380, 684, 1169
BstMAI	GTCTC	4 cut(s)	112, 351, 1224, 1478
BstMBI	GATC	4 cut(s)	330, 377, 681, 1166
BstNI	CCWGG	2 cut(s)	668, 907
BstNSI	RCATGY	2 cut(s)	404, 778
BstSCI	CCNGG	3 cut(s)	521, 666, 905
BstSFI	CTRYAG	2 cut(s)	788, 1313
BstSNI	TACGTA	1 cut(s)	625
BstV2I	GAAGAC	2 cut(s)	594, 1146
BstX2I	RGATCY	3 cut(s)	330, 681, 1166
BstYI	RGATCY	3 cut(s)	330, 681, 1166
BstZ17I	GTATAC	1 cut(s)	622
Bsu36I	CCTNAGG	1 cut(s)	384
BsuI	GTATCC	2 cut(s)	206, 217
BsuRI	GGCC	3 cut(s)	415, 910, 1108
BtgI	CCRYGG	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	463
BtsI	GCAGTG	1 cut(s)	1545
BtsIMutI	CAGTG	3 cut(s)	341, 990, 1545
Cac8I	GCNNGC	1 cut(s)	245
CaiI	CAGNNNCTG	1 cut(s)	636
Cfr13I	GGNCC	2 cut(s)	578, 1107
CseI	GACGC	2 cut(s)	599, 1536
Csp6I	GTAC	1 cut(s)	391
CviAII	CATG	7 cut(s)	401, 569, 775, 839, 1198, 1257, 1520
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	2 cut(s)	265, 384
DpnI	GATC	4 cut(s)	332, 379, 683, 1168
DpnII	GATC	4 cut(s)	330, 377, 681, 1166
Eam1104I	CTCTTC	1 cut(s)	1469
EarI	CTCTTC	1 cut(s)	1469
EciI	GGCGGA	1 cut(s)	892
Eco105I	TACGTA	1 cut(s)	625
Eco47I	GGWCC	1 cut(s)	578
Eco57I	CTGAAG	1 cut(s)	1286
Eco81I	CCTNAGG	1 cut(s)	384
Eco88I	CYCGRG	1 cut(s)	938
EcoRII	CCWGG	2 cut(s)	666, 905
FaeI	CATG	7 cut(s)	404, 572, 778, 842, 1201, 1260, 1523
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	7 cut(s)	400, 568, 774, 838, 1197, 1256, 1519
FauNDI	CATATG	2 cut(s)	1335, 1386
FblI	GTMKAC	2 cut(s)	621, 1557
FokI	GGATG	1 cut(s)	470
FspBI	CTAG	4 cut(s)	947, 971, 1211, 1572
GsaI	CCCAGC	1 cut(s)	186
HaeIII	GGCC	3 cut(s)	415, 910, 1108
HapII	CCGG	1 cut(s)	522
HgaI	GACGC	2 cut(s)	599, 1536
Hin1I	GRCGYC	1 cut(s)	1528
Hin1II	CATG	7 cut(s)	404, 572, 778, 842, 1201, 1260, 1523
HinfI	GANTC	4 cut(s)	305, 673, 892, 1568
HpaII	CCGG	1 cut(s)	522
HphI	GGTGA	6 cut(s)	16, 69, 372, 1214, 1277, 1555
Hpy166II	GTNNAC	6 cut(s)	406, 545, 622, 968, 1268, 1558
Hpy188I	TCNGA	6 cut(s)	30, 251, 310, 888, 897, 1305
Hpy188III	TCNNGA	7 cut(s)	63, 348, 375, 505, 677, 1133, 1514
Hpy8I	GTNNAC	6 cut(s)	406, 545, 622, 968, 1268, 1558
HpyCH4III	ACNGT	6 cut(s)	220, 229, 345, 454, 704, 874
HpyCH4IV	ACGT	1 cut(s)	624
HpyF3I	CTNAG	2 cut(s)	265, 384
HpySE526I	ACGT	1 cut(s)	624
Hsp92I	GRCGYC	1 cut(s)	1528
Hsp92II	CATG	7 cut(s)	404, 572, 778, 842, 1201, 1260, 1523
Kzo9I	GATC	4 cut(s)	330, 377, 681, 1166
LguI	GCTCTTC	1 cut(s)	1469
LmnI	GCTCC	1 cut(s)	552
LweI	GCATC	9 cut(s)	508, 814, 1296, 1332, 1360, 1383, 1395, 1423, 1441
MaeI	CTAG	4 cut(s)	947, 971, 1211, 1572
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	5 cut(s)	94, 317, 526, 770, 1631
MalI	GATC	4 cut(s)	332, 379, 683, 1168
MboI	GATC	4 cut(s)	330, 377, 681, 1166
MboII	GAAGA	8 cut(s)	29, 32, 520, 599, 757, 941, 1151, 1486
MflI	RGATCY	3 cut(s)	330, 681, 1166
MluCI	AATT	8 cut(s)	10, 90, 200, 252, 918, 1252, 1606, 1621
MlyI	GAGTC	2 cut(s)	299, 886
MmeI	TCCRAC	1 cut(s)	709
MseI	TTAA	1 cut(s)	917
MslI	CAYNNNNRTG	3 cut(s)	573, 696, 1098
MspA1I	CMGCKG	4 cut(s)	176, 636, 758, 1312
MspI	CCGG	1 cut(s)	522
MspR9I	CCNGG	3 cut(s)	523, 668, 907
Mva1269I	GAATGC	1 cut(s)	761
MvaI	CCWGG	2 cut(s)	668, 907
NciI	CCSGG	1 cut(s)	523
NdeI	CATATG	2 cut(s)	1335, 1386
NdeII	GATC	4 cut(s)	330, 377, 681, 1166
NlaIII	CATG	7 cut(s)	404, 572, 778, 842, 1201, 1260, 1523
NspI	RCATGY	2 cut(s)	404, 778
NspV	TTCGAA	1 cut(s)	1229
PciI	ACATGT	1 cut(s)	774
PciSI	GCTCTTC	1 cut(s)	1469
PcsI	WCGNNNNNNNCGW	1 cut(s)	355
PctI	GAATGC	1 cut(s)	761
PfeI	GAWTC	2 cut(s)	673, 1568
PleI	GAGTC	2 cut(s)	299, 886
PpsI	GAGTC	2 cut(s)	299, 886
Ppu21I	YACGTR	1 cut(s)	625
PscI	ACATGT	1 cut(s)	774
PsiI	TTATAA	1 cut(s)	1620
Psp6I	CCWGG	2 cut(s)	666, 905
PspFI	CCCAGC	1 cut(s)	182
PspGI	CCWGG	2 cut(s)	666, 905
PspPI	GGNCC	2 cut(s)	578, 1107
PstI	CTGCAG	2 cut(s)	792, 1317
PstNI	CAGNNNCTG	1 cut(s)	636
PsuI	RGATCY	3 cut(s)	330, 681, 1166
PvuII	CAGCTG	4 cut(s)	176, 636, 758, 1312
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
RseI	CAYNNNNRTG	3 cut(s)	573, 696, 1098
SapI	GCTCTTC	1 cut(s)	1469
SaqAI	TTAA	1 cut(s)	917
Sau3AI	GATC	4 cut(s)	330, 377, 681, 1166
Sau96I	GGNCC	2 cut(s)	578, 1107
SchI	GAGTC	2 cut(s)	299, 886
ScrFI	CCNGG	3 cut(s)	523, 668, 907
SfaNI	GCATC	9 cut(s)	508, 814, 1296, 1332, 1360, 1383, 1395, 1423, 1441
SfcI	CTRYAG	2 cut(s)	788, 1313
SfuI	TTCGAA	1 cut(s)	1229
SinI	GGWCC	1 cut(s)	578
SmiMI	CAYNNNNRTG	3 cut(s)	573, 696, 1098
SnaBI	TACGTA	1 cut(s)	625
Sse9I	AATT	8 cut(s)	10, 90, 200, 252, 918, 1252, 1606, 1621
SsiI	CCGC	4 cut(s)	712, 903, 911, 1508
SspI	AATATT	1 cut(s)	472
SspMI	CTAG	4 cut(s)	947, 971, 1211, 1572
StyD4I	CCNGG	3 cut(s)	521, 666, 905
TaaI	ACNGT	6 cut(s)	220, 229, 345, 454, 704, 874
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	4 cut(s)	191, 349, 1229, 1594
TasI	AATT	8 cut(s)	10, 90, 200, 252, 918, 1252, 1606, 1621
TauI	GCSGC	1 cut(s)	913
TfiI	GAWTC	2 cut(s)	673, 1568
Tru1I	TTAA	1 cut(s)	917
Tru9I	TTAA	1 cut(s)	917
TscAI	CASTG	3 cut(s)	348, 997, 1545
TspDTI	ATGAA	7 cut(s)	212, 446, 506, 942, 948, 1104, 1245
TspRI	CASTG	3 cut(s)	348, 997, 1545
VpaK11BI	GGWCC	1 cut(s)	578
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	2 cut(s)	404, 778
XmiI	GTMKAC	2 cut(s)	621, 1557
XspI	CTAG	4 cut(s)	947, 971, 1211, 1572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.