Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0003391

Physical Location & Seq

Genomic Coordinates Forward (+)

62092729 .. 62096799

Gene Structure 4071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G035320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGGGTCGGACAGTTTTGGTTCTGGGTCTTGTTCTTTTGGTTCTGATCGGAGGTGCCTCATCGGCTCCGATGAGTCCCACATCAAAGATTGTAAGTGGGTATTTCTCAAATTTGGCGTCTGTGTTTATGAAATGGCTCTGGTCACTGAAAGCAACGACCAAGACAGCGGTTTCGGGCCGTCCGATGGTGAAGTTTGAGAGTGGGTTTACGGTGGAGACGGTGTTTGATGGGAGCAAGCTTGGTATTGAGCCTCACACTGTTGAGGTTTTGCCAAATGGGGAGCTTTTGATTTTGGACTCTGCTAATAGTAACATTTATAGAATGTCTTCGTCTCTATCTATATATAGCAGACCAAAGCTGGTTGCAGGGTCCCCTGAAGGCAATGTTGGACATATAGATGGAAAGCCCAGAGAGGCAAGAATGAACCACCCAAAGGGGCTTACAGTTGATGACAGGGGAAACATTTATATTGCAGACACAAGAAATATGGCAATCAGGAAGATTAGTGATGCTGGGGTCACAACAATTGCAGGAGGGAAATTGGGCCGTGGGGGAAGCCATGTGGATGGACCAAGTGAAGATGCAAAATTTTCCAACGACTTTGATGTGGTTTACATTGGAAGCAGCTGCTCCTTACTTGTCATAGACAGAGGAAATCAAGCTATCAGGGAGATCCAACTCCATTTTGATGATTGTGCTTACCAATATGGAAGTGGTTTCCCACTTGGGATTGCGATGCTTCTGGGGGCAGGCTTTTTTGGTTACATGTTAGCATTACTGCAACGTAGAGTGGGTACAATTGTCTCTTCCCAAAATGATGAAGACCTAACCAAGCCAAGAATGCCGTCAAGTCCATACAAAAAGCCTCTGAAATCAGTCATGCCACCACTGATTCCAACTGAAGATGAGCAGGAGAAGCAAGAAGAAGGCTTCTTTGGATCACTTGGAAAGCTTTTAGTCAATGCCTGGGCATCTATTTTGGAAATTCTTGGGAAAAAGCATTCAAACTATCAAGACCAAAGCCAGCAGCAACAGCAGCACAAGCATTCAAATACTTGGCCTGTGCAAGATAGTTATGTGATAGCAGATGAGGATGAGCCGCCTACAATTGACACCCGAACCCCTACCCCACGCAAAACCTATGCGTTTATGGCCAAGGATGCTGAAACAATGCAACAGTTGCGAGAAAGCCGAGTTTTCTACAATGGGTGGGGTGATCATCAACAGCAGCCAAAACAGCAGCAGCATTATCATCGTCACCAGTCATCCACTTCACAAACTTTCTATGAGCAGAGCTGTGATCAAACCACTGAGATTGTGTTTGGGGCAGTCCAGGAGCAGGATGGGAAGGGTGAAGCTGTGGTCATTAAGCCTATTGATTATGGAGATCCCATGCTTGGTCATCGCAGTGTTAACTACCGATTCAATGCAATGGGTTATCCCCGTGGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

484

Amino Acids

53.53

Weight (kDa)

6.51

Isoelectric Point (pI)

47.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70280 AT1G70280
fragaria_vesca	FvH4_4g34810 FvH4_4g34810 FvH4_6g50490 FvH4_6g50490
malus_domestica	MD09G1036000.v1.1 MD13G1089500.v1.1 MD16G1089700.v1.1 MD17G1037600.v1.1
prunus_persica	Prupe.1G256300_v2.0.a1 Prupe.3G281800_v2.0.a1 Prupe.3G281800_v2.0.a1
pyrus_communis	pycom111g02890 pycom13g07800 pycom16g07680 pycom17g03370
rosa_chinensis	RchiOBHm_Chr2g0170891 RchiOBHm_Chr4g0444151
rosa_laevigata	RLG00000021991
rosa_multiflora	Rmu_sc0009938.1_g000002 Rmu_sc0012638.1_g000012
rosa_roxburghii	Rroxscaffold_2G00080990 Rroxscaffold_5G00384740
rosa_rugosa	Rorug02G0552200 Rorug04G0350500
rosa_samantha	Rh2AG624900 Rh2BG635600 Rh2CG604300 Rh2DG647200 Rh4AG411100 Rh4BG422500 Rh4CG436900 Rh4DG417800
rosa_wichuraiana	Rw2G051760 Rw4G035320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	53
AciI	CCGC	2 cut(s)	167, 1100
AclWI	GGATC	3 cut(s)	667, 946, 1382
AcoI	YGGCCR	1 cut(s)	1152
AcsI	RAATTY	3 cut(s)	109, 587, 984
AcuI	CTGAAG	2 cut(s)	396, 921
AcyI	GRCGYC	1 cut(s)	116
AfaI	GTAC	1 cut(s)	796
AfiI	CCNNNNNNNGG	4 cut(s)	184, 433, 1339, 1397
AflIII	ACRYGT	1 cut(s)	765
AgsI	TTSAA	3 cut(s)	1005, 1050, 1426
AjnI	CCWGG	2 cut(s)	965, 1332
AjuI	GAANNNNNNNTTGG	4 cut(s)	369, 401, 918, 950
AluBI	AGCT	8 cut(s)	238, 283, 358, 627, 662, 952, 1296, 1358
AluI	AGCT	8 cut(s)	238, 283, 358, 627, 662, 952, 1296, 1358
Alw26I	GTCTC	3 cut(s)	209, 336, 808
AlwI	GGATC	3 cut(s)	667, 946, 1382
AoxI	GGCC	4 cut(s)	175, 544, 1058, 1152
ApeKI	GCWGC	7 cut(s)	624, 627, 1027, 1036, 1228, 1240, 1243
ApoI	RAATTY	3 cut(s)	109, 587, 984
ArsI	GACNNNNNNTTYG	4 cut(s)	101, 133, 154, 186
Asp700I	GAANNNNTTC	1 cut(s)	325
AspS9I	GGNCC	4 cut(s)	175, 369, 544, 569
AsuHPI	GGTGA	4 cut(s)	199, 1226, 1250, 1364
AvaII	GGWCC	2 cut(s)	369, 569
BaeI	ACNNNNGTAYC	2 cut(s)	786, 819
BalI	TGGCCA	1 cut(s)	1154
BanI	GGYRCC	1 cut(s)	53
BbsI	GAAGAC	2 cut(s)	318, 828
BbvI	GCAGC	7 cut(s)	614, 636, 1039, 1048, 1240, 1252, 1255
BccI	CCATC	5 cut(s)	178, 221, 392, 560, 1337
BceAI	ACGGC	3 cut(s)	162, 531, 829
BcgI	CGANNNNNNTGC	2 cut(s)	1235, 1269
BciT130I	CCWGG	2 cut(s)	967, 1334
BclI	TGATCA	2 cut(s)	1216, 1300
BcoDI	GTCTC	3 cut(s)	209, 336, 808
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	8 cut(s)	625, 628, 1028, 1037, 1100, 1229, 1241, 1244
BlsI	GCNGC	8 cut(s)	626, 629, 1029, 1038, 1101, 1230, 1242, 1245
Bme1390I	CCNGG	2 cut(s)	967, 1334
Bme18I	GGWCC	2 cut(s)	369, 569
BmgT120I	GGNCC	4 cut(s)	175, 369, 544, 569
BmiI	GGNNCC	4 cut(s)	55, 66, 370, 371
BmrFI	CCNGG	2 cut(s)	967, 1334
BmsI	GCATC	5 cut(s)	499, 571, 726, 980, 1150
BpiI	GAAGAC	2 cut(s)	318, 828
BsaHI	GRCGYC	1 cut(s)	116
BsaJI	CCNNGG	4 cut(s)	547, 966, 1155, 1444
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	4 cut(s)	184, 433, 1339, 1397
Bse1I	ACTGG	1 cut(s)	1261
Bse3DI	GCAATG	2 cut(s)	388, 1437
BseBI	CCWGG	2 cut(s)	967, 1334
BseDI	CCNNGG	4 cut(s)	547, 966, 1155, 1444
BseGI	GGATG	5 cut(s)	571, 1099, 1165, 1265, 1348
BseLI	CCNNNNNNNGG	4 cut(s)	184, 433, 1339, 1397
BseMI	GCAATG	2 cut(s)	388, 1437
BseMII	CTCAG	1 cut(s)	1302
BseNI	ACTGG	1 cut(s)	1261
BseXI	GCAGC	7 cut(s)	614, 636, 1039, 1048, 1240, 1252, 1255
BseYI	CCCAGC	1 cut(s)	512
BshFI	GGCC	4 cut(s)	177, 546, 1060, 1154
BshNI	GGYRCC	1 cut(s)	53
BslFI	GGGAC	2 cut(s)	60, 355
BslI	CCNNNNNNNGG	4 cut(s)	184, 433, 1339, 1397
BsmAI	GTCTC	3 cut(s)	209, 336, 808
BsmBI	CGTCTC	2 cut(s)	209, 336
BsmFI	GGGAC	2 cut(s)	60, 355
BsmI	GAATGC	3 cut(s)	846, 1000, 1045
BsnI	GGCC	4 cut(s)	177, 546, 1060, 1154
Bsp143I	GATC	6 cut(s)	45, 672, 938, 1216, 1300, 1387
BspACI	CCGC	2 cut(s)	167, 1100
BspANI	GGCC	4 cut(s)	177, 546, 1060, 1154
BspCNI	CTCAG	1 cut(s)	1303
BspLI	GGNNCC	4 cut(s)	55, 66, 370, 371
BspPI	GGATC	3 cut(s)	667, 946, 1382
BspT107I	GGYRCC	1 cut(s)	53
BsrDI	GCAATG	2 cut(s)	388, 1437
BsrI	ACTGG	1 cut(s)	1261
BssECI	CCNNGG	4 cut(s)	547, 966, 1155, 1444
BssMI	GATC	6 cut(s)	45, 672, 938, 1216, 1300, 1387
BssNI	GRCGYC	1 cut(s)	116
BssT1I	CCWWGG	1 cut(s)	1155
Bst2UI	CCWGG	2 cut(s)	967, 1334
Bst4CI	ACNGT	6 cut(s)	13, 211, 220, 259, 445, 1179
Bst6I	CTCTTC	1 cut(s)	811
BstACI	GRCGYC	1 cut(s)	116
BstAPI	GCANNNNNTGC	1 cut(s)	1180
BstC8I	GCNNGC	3 cut(s)	236, 751, 1025
BstDEI	CTNAG	1 cut(s)	1311
BstDSI	CCRYGG	2 cut(s)	547, 1444
BstF5I	GGATG	5 cut(s)	571, 1099, 1165, 1265, 1348
BstKTI	GATC	6 cut(s)	48, 675, 941, 1219, 1303, 1390
BstMAI	GTCTC	3 cut(s)	209, 336, 808
BstMBI	GATC	6 cut(s)	45, 672, 938, 1216, 1300, 1387
BstNI	CCWGG	2 cut(s)	967, 1334
BstNSI	RCATGY	1 cut(s)	769
BstSCI	CCNGG	2 cut(s)	965, 1332
BstV1I	GCAGC	7 cut(s)	614, 636, 1039, 1048, 1240, 1252, 1255
BstV2I	GAAGAC	2 cut(s)	318, 828
BstX2I	RGATCY	2 cut(s)	672, 1387
BstXI	CCANNNNNNTGG	1 cut(s)	566
BstYI	RGATCY	2 cut(s)	672, 1387
BsuRI	GGCC	4 cut(s)	177, 546, 1060, 1154
BtgI	CCRYGG	2 cut(s)	547, 1444
BtgZI	GCGATG	2 cut(s)	749, 1388
BtsCI	GGATG	5 cut(s)	571, 1099, 1165, 1265, 1348
BtsI	GCAGTG	1 cut(s)	1414
BtsIMutI	CAGTG	5 cut(s)	143, 255, 887, 1308, 1414
Cac8I	GCNNGC	3 cut(s)	236, 751, 1025
Cfr13I	GGNCC	4 cut(s)	175, 369, 544, 569
CseI	GACGC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	795
CspCI	CAANNNNNGTGG	2 cut(s)	1297, 1332
CviAII	CATG	4 cut(s)	560, 766, 880, 1393
CviQI	GTAC	1 cut(s)	795
DdeI	CTNAG	1 cut(s)	1311
DpnI	GATC	6 cut(s)	47, 674, 940, 1218, 1302, 1389
DpnII	GATC	6 cut(s)	45, 672, 938, 1216, 1300, 1387
EaeI	YGGCCR	1 cut(s)	1152
Eam1104I	CTCTTC	1 cut(s)	811
EarI	CTCTTC	1 cut(s)	811
Eco130I	CCWWGG	1 cut(s)	1155
Eco47I	GGWCC	2 cut(s)	369, 569
Eco57I	CTGAAG	2 cut(s)	396, 921
EcoO109I	RGGNCCY	1 cut(s)	369
EcoRII	CCWGG	2 cut(s)	965, 1332
EcoT14I	CCWWGG	1 cut(s)	1155
ErhI	CCWWGG	1 cut(s)	1155
Esp3I	CGTCTC	2 cut(s)	209, 336
FaeI	CATG	4 cut(s)	563, 769, 883, 1396
FaqI	GGGAC	2 cut(s)	60, 355
FatI	CATG	4 cut(s)	559, 765, 879, 1392
FbaI	TGATCA	2 cut(s)	1216, 1300
Fnu4HI	GCNGC	8 cut(s)	625, 628, 1028, 1037, 1100, 1229, 1241, 1244
FokI	GGATG	5 cut(s)	578, 1106, 1172, 1252, 1355
Fsp4HI	GCNGC	8 cut(s)	625, 628, 1028, 1037, 1100, 1229, 1241, 1244
GluI	GCNGC	8 cut(s)	625, 628, 1028, 1037, 1100, 1229, 1241, 1244
GsaI	CCCAGC	1 cut(s)	516
HaeIII	GGCC	4 cut(s)	177, 546, 1060, 1154
HgaI	GACGC	1 cut(s)	105
Hin1I	GRCGYC	1 cut(s)	116
Hin1II	CATG	4 cut(s)	563, 769, 883, 1396
HincII	GTYRAC	1 cut(s)	1414
HindII	GTYRAC	1 cut(s)	1414
HindIII	AAGCTT	2 cut(s)	236, 950
HinfI	GANTC	4 cut(s)	73, 296, 892, 1422
HpaI	GTTAAC	1 cut(s)	1414
HphI	GGTGA	4 cut(s)	199, 1226, 1250, 1364
Hpy166II	GTNNAC	3 cut(s)	207, 613, 1414
Hpy188I	TCNGA	6 cut(s)	9, 45, 50, 69, 183, 870
Hpy188III	TCNNGA	2 cut(s)	496, 1013
Hpy8I	GTNNAC	3 cut(s)	207, 613, 1414
HpyAV	CCTTC	3 cut(s)	371, 920, 1342
HpyCH4III	ACNGT	6 cut(s)	13, 211, 220, 259, 445, 1179
HpyCH4IV	ACGT	1 cut(s)	784
HpyCH4V	TGCA	8 cut(s)	365, 473, 530, 584, 781, 1066, 1174, 1430
HpyF3I	CTNAG	1 cut(s)	1311
HpySE526I	ACGT	1 cut(s)	784
Hsp92I	GRCGYC	1 cut(s)	116
Hsp92II	CATG	4 cut(s)	563, 769, 883, 1396
KflI	GGGWCCC	1 cut(s)	369
Ksp22I	TGATCA	2 cut(s)	1216, 1300
KspAI	GTTAAC	1 cut(s)	1414
Kzo9I	GATC	6 cut(s)	45, 672, 938, 1216, 1300, 1387
LmnI	GCTCC	5 cut(s)	70, 231, 280, 635, 1336
Lsp1109I	GCAGC	7 cut(s)	614, 636, 1039, 1048, 1240, 1252, 1255
LweI	GCATC	5 cut(s)	499, 571, 726, 980, 1150
MaeII	ACGT	1 cut(s)	784
MaeIII	GTNAC	5 cut(s)	141, 308, 517, 761, 1256
MalI	GATC	6 cut(s)	47, 674, 940, 1218, 1302, 1389
MboI	GATC	6 cut(s)	45, 672, 938, 1216, 1300, 1387
MboII	GAAGA	7 cut(s)	318, 511, 590, 798, 833, 914, 935
MfeI	CAATTG	3 cut(s)	525, 798, 1107
MflI	RGATCY	2 cut(s)	672, 1387
MlsI	TGGCCA	1 cut(s)	1154
MluCI	AATT	7 cut(s)	109, 525, 539, 587, 798, 984, 1107
MluNI	TGGCCA	1 cut(s)	1154
MlyI	GAGTC	2 cut(s)	82, 290
MmeI	TCCRAC	4 cut(s)	367, 618, 700, 920
MnlI	CCTC	9 cut(s)	44, 67, 256, 261, 406, 527, 644, 876, 1084
Mox20I	TGGCCA	1 cut(s)	1154
MroXI	GAANNNNTTC	1 cut(s)	325
MscI	TGGCCA	1 cut(s)	1154
MseI	TTAA	2 cut(s)	1368, 1413
MslI	CAYNNNNRTG	4 cut(s)	396, 564, 687, 1407
Msp20I	TGGCCA	1 cut(s)	1154
MspA1I	CMGCKG	2 cut(s)	167, 627
MspR9I	CCNGG	2 cut(s)	967, 1334
MunI	CAATTG	3 cut(s)	525, 798, 1107
Mva1269I	GAATGC	3 cut(s)	846, 1000, 1045
MvaI	CCWGG	2 cut(s)	967, 1334
NdeII	GATC	6 cut(s)	45, 672, 938, 1216, 1300, 1387
NlaIII	CATG	4 cut(s)	563, 769, 883, 1396
NlaIV	GGNNCC	4 cut(s)	55, 66, 370, 371
NmeAIII	GCCGAG	1 cut(s)	1217
NmuCI	GTSAC	3 cut(s)	141, 517, 1256
NspI	RCATGY	1 cut(s)	769
PciI	ACATGT	1 cut(s)	765
PcsI	WCGNNNNNNNCGW	1 cut(s)	179
PctI	GAATGC	3 cut(s)	846, 1000, 1045
PdmI	GAANNNNTTC	1 cut(s)	325
PfeI	GAWTC	2 cut(s)	892, 1422
PfoI	TCCNGGA	1 cut(s)	1332
PkrI	GCNGC	8 cut(s)	626, 629, 1029, 1038, 1101, 1230, 1242, 1245
PleI	GAGTC	2 cut(s)	81, 290
PpsI	GAGTC	2 cut(s)	81, 290
PpuMI	RGGWCCY	1 cut(s)	369
PscI	ACATGT	1 cut(s)	765
Psp5II	RGGWCCY	1 cut(s)	369
Psp6I	CCWGG	2 cut(s)	965, 1332
PspFI	CCCAGC	1 cut(s)	512
PspGI	CCWGG	2 cut(s)	965, 1332
PspN4I	GGNNCC	4 cut(s)	55, 66, 370, 371
PspPI	GGNCC	4 cut(s)	175, 369, 544, 569
PspPPI	RGGWCCY	1 cut(s)	369
PsuI	RGATCY	2 cut(s)	672, 1387
PvuII	CAGCTG	1 cut(s)	627
RsaI	GTAC	1 cut(s)	796
RsaNI	GTAC	1 cut(s)	795
RseI	CAYNNNNRTG	4 cut(s)	396, 564, 687, 1407
SaqAI	TTAA	2 cut(s)	1368, 1413
SatI	GCNGC	8 cut(s)	625, 628, 1028, 1037, 1100, 1229, 1241, 1244
Sau3AI	GATC	6 cut(s)	45, 672, 938, 1216, 1300, 1387
Sau96I	GGNCC	4 cut(s)	175, 369, 544, 569
SchI	GAGTC	2 cut(s)	82, 290
ScrFI	CCNGG	2 cut(s)	967, 1334
SfaNI	GCATC	5 cut(s)	499, 571, 726, 980, 1150
SinI	GGWCC	2 cut(s)	369, 569
SmiMI	CAYNNNNRTG	4 cut(s)	396, 564, 687, 1407
Sse9I	AATT	7 cut(s)	109, 525, 539, 587, 798, 984, 1107
SsiI	CCGC	2 cut(s)	167, 1100
StyD4I	CCNGG	2 cut(s)	965, 1332
StyI	CCWWGG	1 cut(s)	1155
TaaI	ACNGT	6 cut(s)	13, 211, 220, 259, 445, 1179
TaiI	ACGT	1 cut(s)	787
TasI	AATT	7 cut(s)	109, 525, 539, 587, 798, 984, 1107
TauI	GCSGC	1 cut(s)	1102
TfiI	GAWTC	2 cut(s)	892, 1422
Tru1I	TTAA	2 cut(s)	1368, 1413
Tru9I	TTAA	2 cut(s)	1368, 1413
TscAI	CASTG	5 cut(s)	150, 262, 894, 1315, 1414
TseFI	GTSAC	3 cut(s)	141, 517, 1256
TseI	GCWGC	7 cut(s)	624, 627, 1027, 1036, 1228, 1240, 1243
Tsp45I	GTSAC	3 cut(s)	141, 517, 1256
TspDTI	ATGAA	3 cut(s)	143, 437, 834
TspRI	CASTG	5 cut(s)	150, 262, 894, 1315, 1414
VpaK11BI	GGWCC	2 cut(s)	369, 569
XapI	RAATTY	3 cut(s)	109, 587, 984
XceI	RCATGY	1 cut(s)	769
XcmI	CCANNNNNNNNNTGG	2 cut(s)	710, 1340
XmnI	GAANNNNTTC	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.