Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003391

Physical Location & Seq

Genomic Coordinates Reverse (-)

5150442 .. 5153478

Gene Structure 3037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g07800.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGTTTCAGCTTTTTGGTGTTGTGGTCTCCATTGGAAGAAAAGGAGTAATGGGTCGGAGTTTCTGGGCGGCGGCTCTCATCGTTTTGGTTATGTTTGGCGGCGTCTCGTCAGCTGCCCCTACTGCCCCAGCAAAGATTGTTGGTGGGTTTTTCTCAAATGCTGCGTCTGCATTCATGAAATGGCTGTGGTCGCTCAAAGCAACTACCAAAACAGCGGTTTCGGGCCGTCCGGTGATGAAGTTTGAGAGTGGGTTCAATGTGGAGACGGTGTTTGATGGAAGCAAGCTTGGTGTTGAGCCTTACTCTGTGGAGGTTTTGCCAAGTGGGGAGCTTCTGATTTTGGATTCTGCTAATAGCAACCTCTATAGGATCTCTTCCTCTCTATCTCTCTACAGCAGACCAAAGCTGGTTGCAGGATCGTCTGATGGATACCCGGGACATGTAGATGGGAGGACCAGAGAGGCAAGAATGAACCACCCAAAGGGGCTTACAGTTGATGACAGTGGAAATATTTATGTTGCAGACACAATGAATATGGCAATCAGGAAGATAAGCGATGCTGGGGTTACAACAATAGCAGGAGGGAAATTGGGCCGTGGGGGAAGCCATGTGGATGGACCAAGTGAAGATGCAAAGTTTTCGGACGATTTTGATGTGGTTTACATTGGAAGCAGCTGCTCTTTACTTGTTATAGACAGAGGAAATCAAGCAATCAGGGAGATCCAACTACATTTCGATGACTGTGCTTATCAATATAGAAGTGGTTTCCCTCTTGGAATTGCAATGCTTGTTGGGGCTGGCTTCTTTGGTTATATGTTAGCATTGCTACAATGTAGAGTTGGTACAATTGTCTCTTCACAAAATGATCAAGAGCCAATGAAGACGAGCATTCCTCCAAGTTCATACCAGAAGCCTCTGAAACCAGTCAGGCCACCTTTGATTCCAACTGAAGATGAGCAGGAGAAGCATGAAGAAGGCTTCTTTGGATCCCTTGGGAAGCTTTTGGTCAATGCCGGGGCATCTGGTATGGAAATTCTTGGGGCAATATTTCCCGGTTTCAGGAAAAAGCATCTGAACTATCAATACCAAAGTCAGCAGCAACAGAAGTACTCAAATTCCTGGCCTGTGCAAGATAGCTATGTGATACCAGATGAAGATGAGCCACCTTCCATTGAAACCCGAACTCCCACCCCTCGCAAAACCTACCCATTCATGGCCAAGGATGCTGAAACAATCCATCAGTTGCGGCAAAGTCGAGTTTTCTCTAATGGGTGGGATAATCTTCAGCAGCAGCAGCAAAAACAACCGCAGCAGCATTATCATCGGTACCAATCATCAACCCCAAATACTATCTATCAGCAGAGTAGCGAAAATACCACCGAGGTTGTGTTTGGTGCAGTTCAGGAGCAGGATGGGAAGGGTGAAGCTGTGGTCATTAAGCCTATTGATTATGGAGCTCCATTGTTCAATCACCACAGTTTCAGGTCCCGAATCAATCCGAACGGCTATAGTTATACCCATGGATATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

511

Amino Acids

56.14

Weight (kDa)

7.2

Isoelectric Point (pI)

41.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70280 AT1G70280
fragaria_vesca	FvH4_4g34810 FvH4_4g34810 FvH4_6g50490 FvH4_6g50490
malus_domestica	MD09G1036000.v1.1 MD13G1089500.v1.1 MD16G1089700.v1.1 MD17G1037600.v1.1
prunus_persica	Prupe.1G256300_v2.0.a1 Prupe.3G281800_v2.0.a1 Prupe.3G281800_v2.0.a1
pyrus_communis	pycom111g02890 pycom13g07800 pycom16g07680 pycom17g03370
rosa_chinensis	RchiOBHm_Chr2g0170891 RchiOBHm_Chr4g0444151
rosa_laevigata	RLG00000021991
rosa_multiflora	Rmu_sc0009938.1_g000002 Rmu_sc0012638.1_g000012
rosa_roxburghii	Rroxscaffold_2G00080990 Rroxscaffold_5G00384740
rosa_rugosa	Rorug02G0552200 Rorug04G0350500
rosa_samantha	Rh2AG624900 Rh2BG635600 Rh2CG604300 Rh2DG647200 Rh4AG411100 Rh4BG422500 Rh4CG436900 Rh4DG417800
rosa_wichuraiana	Rw2G051760 Rw4G035320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1326
AccB1I	GGYRCC	1 cut(s)	1326
AciI	CCGC	6 cut(s)	68, 71, 99, 215, 1246, 1307
AclWI	GGATC	5 cut(s)	377, 424, 715, 981, 994
AcoI	YGGCCR	1 cut(s)	1215
AcsI	RAATTY	2 cut(s)	1032, 1114
AcuI	CTGAAG	2 cut(s)	969, 1268
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	3 cut(s)	844, 1109, 1328
AfiI	CCNNNNNNNGG	3 cut(s)	481, 1059, 1213
AflIII	ACRYGT	1 cut(s)	439
AgsI	TTSAA	3 cut(s)	256, 1175, 1468
AjnI	CCWGG	1 cut(s)	1118
AjuI	GAANNNNNNNTTGG	2 cut(s)	966, 998
Alw21I	GWGCWC	1 cut(s)	1459
Alw26I	GTCTC	4 cut(s)	31, 109, 257, 856
AlwI	GGATC	5 cut(s)	377, 424, 715, 981, 994
Ama87I	CYCGRG	1 cut(s)	433
AoxI	GGCC	5 cut(s)	223, 592, 929, 1121, 1215
ApoI	RAATTY	2 cut(s)	1032, 1114
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
Asp718I	GGTACC	1 cut(s)	1326
AspS9I	GGNCC	5 cut(s)	223, 453, 592, 617, 1485
AsuC2I	CCSGG	4 cut(s)	434, 435, 1015, 1053
AsuHPI	GGTGA	3 cut(s)	244, 1433, 1463
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	3 cut(s)	453, 617, 1485
BaeI	ACNNNNGTAYC	2 cut(s)	834, 867
BalI	TGGCCA	1 cut(s)	1217
BamHI	GGATCC	1 cut(s)	986
BanI	GGYRCC	1 cut(s)	1326
BanII	GRGCYC	1 cut(s)	1459
BbsI	GAAGAC	1 cut(s)	887
Bbv12I	GWGCWC	1 cut(s)	1459
BccI	CCATC	6 cut(s)	269, 419, 440, 608, 1245, 1406
BceAI	ACGGC	3 cut(s)	210, 579, 1519
BcgI	CGANNNNNNTGC	6 cut(s)	621, 655, 725, 759, 1304, 1338
BciT130I	CCWGG	1 cut(s)	1120
BciVI	GTATCC	1 cut(s)	422
BclI	TGATCA	1 cut(s)	865
BcnI	CCSGG	4 cut(s)	434, 435, 1015, 1053
BcoDI	GTCTC	4 cut(s)	31, 109, 257, 856
BfmI	CTRYAG	3 cut(s)	364, 391, 1507
BfuI	GTATCC	1 cut(s)	422
BmcAI	AGTACT	1 cut(s)	1109
Bme1390I	CCNGG	5 cut(s)	434, 435, 1015, 1053, 1120
Bme18I	GGWCC	3 cut(s)	453, 617, 1485
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	5 cut(s)	223, 453, 592, 617, 1485
BmiI	GGNNCC	3 cut(s)	988, 1328, 1487
BmrFI	CCNGG	5 cut(s)	434, 435, 1015, 1053, 1120
BmsI	GCATC	5 cut(s)	547, 619, 1028, 1078, 1213
BpiI	GAAGAC	1 cut(s)	887
BplI	GAGNNNNNCTC	4 cut(s)	287, 319, 877, 909
BpuMI	CCSGG	4 cut(s)	434, 435, 1015, 1053
BsaHI	GRCGYC	1 cut(s)	102
BsaI	GGTCTC	1 cut(s)	31
BsaJI	CCNNGG	7 cut(s)	433, 595, 991, 1014, 1218, 1380, 1519
BsaWI	WCCGGW	1 cut(s)	229
BsaXI	ACNNNNNCTCC	4 cut(s)	254, 284, 1168, 1198
Bsc4I	CCNNNNNNNGG	3 cut(s)	481, 1059, 1213
Bse1I	ACTGG	1 cut(s)	923
Bse3DI	GCAATG	2 cut(s)	789, 821
BseBI	CCWGG	1 cut(s)	1120
BseDI	CCNNGG	7 cut(s)	433, 595, 991, 1014, 1218, 1380, 1519
BseGI	GGATG	3 cut(s)	619, 1228, 1417
BseLI	CCNNNNNNNGG	3 cut(s)	481, 1059, 1213
BseMI	GCAATG	2 cut(s)	789, 821
BseNI	ACTGG	1 cut(s)	923
BseYI	CCCAGC	2 cut(s)	127, 560
BsgI	GTGCAG	1 cut(s)	1416
BshFI	GGCC	5 cut(s)	225, 594, 931, 1123, 1217
BshNI	GGYRCC	1 cut(s)	1326
BsiHKAI	GWGCWC	1 cut(s)	1459
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	4 cut(s)	230, 434, 1014, 1053
BslFI	GGGAC	2 cut(s)	450, 1471
BslI	CCNNNNNNNGG	3 cut(s)	481, 1059, 1213
BsmAI	GTCTC	4 cut(s)	31, 109, 257, 856
BsmBI	CGTCTC	2 cut(s)	109, 257
BsmFI	GGGAC	2 cut(s)	450, 1471
BsmI	GAATGC	2 cut(s)	170, 888
BsnI	GGCC	5 cut(s)	225, 594, 931, 1123, 1217
Bso31I	GGTCTC	1 cut(s)	31
BsoBI	CYCGRG	1 cut(s)	433
Bsp1286I	GDGCHC	1 cut(s)	1459
Bsp143I	GATC	5 cut(s)	369, 416, 720, 865, 986
Bsp19I	CCATGG	1 cut(s)	1519
BspACI	CCGC	6 cut(s)	68, 71, 99, 215, 1246, 1307
BspANI	GGCC	5 cut(s)	225, 594, 931, 1123, 1217
BspHI	TCATGA	1 cut(s)	174
BspLI	GGNNCC	3 cut(s)	988, 1328, 1487
BspPI	GGATC	5 cut(s)	377, 424, 715, 981, 994
BspT107I	GGYRCC	1 cut(s)	1326
BspTNI	GGTCTC	1 cut(s)	31
BsrDI	GCAATG	2 cut(s)	789, 821
BsrI	ACTGG	1 cut(s)	923
BssECI	CCNNGG	7 cut(s)	433, 595, 991, 1014, 1218, 1380, 1519
BssMI	GATC	5 cut(s)	369, 416, 720, 865, 986
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	3 cut(s)	991, 1218, 1519
Bst2UI	CCWGG	1 cut(s)	1120
Bst4CI	ACNGT	5 cut(s)	268, 493, 503, 743, 1478
Bst6I	CTCTTC	2 cut(s)	379, 859
BstACI	GRCGYC	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	284, 799
BstDSI	CCRYGG	2 cut(s)	595, 1519
BstF5I	GGATG	3 cut(s)	619, 1228, 1417
BstKTI	GATC	5 cut(s)	372, 419, 723, 868, 989
BstMAI	GTCTC	4 cut(s)	31, 109, 257, 856
BstMBI	GATC	5 cut(s)	369, 416, 720, 865, 986
BstMWI	GCNNNNNNNGC	6 cut(s)	122, 167, 190, 964, 1223, 1294
BstNI	CCWGG	1 cut(s)	1120
BstNSI	RCATGY	1 cut(s)	443
BstSCI	CCNGG	5 cut(s)	432, 433, 1013, 1051, 1118
BstSFI	CTRYAG	3 cut(s)	364, 391, 1507
BstV2I	GAAGAC	1 cut(s)	887
BstX2I	RGATCY	3 cut(s)	369, 720, 986
BstXI	CCANNNNNNTGG	1 cut(s)	614
BstYI	RGATCY	3 cut(s)	369, 720, 986
BsuI	GTATCC	1 cut(s)	422
BsuRI	GGCC	5 cut(s)	225, 594, 931, 1123, 1217
BtgI	CCRYGG	2 cut(s)	595, 1519
BtgZI	GCGATG	1 cut(s)	570
BtsCI	GGATG	3 cut(s)	619, 1228, 1417
BtsIMutI	CAGTG	1 cut(s)	508
Cac8I	GCNNGC	2 cut(s)	284, 799
CciI	TCATGA	1 cut(s)	174
Cfr13I	GGNCC	5 cut(s)	223, 453, 592, 617, 1485
Cfr9I	CCCGGG	1 cut(s)	433
CseI	GACGC	2 cut(s)	91, 153
Csp6I	GTAC	3 cut(s)	843, 1108, 1327
CspCI	CAANNNNNGTGG	2 cut(s)	1366, 1401
CviAII	CATG	6 cut(s)	175, 440, 608, 968, 1213, 1520
CviQI	GTAC	3 cut(s)	843, 1108, 1327
DpnI	GATC	5 cut(s)	371, 418, 722, 867, 988
DpnII	GATC	5 cut(s)	369, 416, 720, 865, 986
EaeI	YGGCCR	1 cut(s)	1215
Eam1104I	CTCTTC	2 cut(s)	379, 859
EarI	CTCTTC	2 cut(s)	379, 859
Ecl136II	GAGCTC	1 cut(s)	1457
Eco130I	CCWWGG	3 cut(s)	991, 1218, 1519
Eco24I	GRGCYC	1 cut(s)	1459
Eco31I	GGTCTC	1 cut(s)	31
Eco47I	GGWCC	3 cut(s)	453, 617, 1485
Eco53kI	GAGCTC	1 cut(s)	1457
Eco57I	CTGAAG	2 cut(s)	969, 1268
Eco88I	CYCGRG	1 cut(s)	433
EcoICRI	GAGCTC	1 cut(s)	1457
EcoO109I	RGGNCCY	1 cut(s)	1485
EcoRII	CCWGG	1 cut(s)	1118
EcoT14I	CCWWGG	3 cut(s)	991, 1218, 1519
EcoT38I	GRGCYC	1 cut(s)	1459
ErhI	CCWWGG	3 cut(s)	991, 1218, 1519
Esp3I	CGTCTC	2 cut(s)	109, 257
FaeI	CATG	6 cut(s)	178, 443, 611, 971, 1216, 1523
FaqI	GGGAC	2 cut(s)	450, 1471
FatI	CATG	6 cut(s)	174, 439, 607, 967, 1212, 1519
FbaI	TGATCA	1 cut(s)	865
FokI	GGATG	3 cut(s)	626, 1235, 1424
FriOI	GRGCYC	1 cut(s)	1459
GsaI	CCCAGC	2 cut(s)	131, 564
HaeIII	GGCC	5 cut(s)	225, 594, 931, 1123, 1217
HapII	CCGG	4 cut(s)	230, 434, 1014, 1053
HgaI	GACGC	2 cut(s)	91, 153
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	6 cut(s)	178, 443, 611, 971, 1216, 1523
HindIII	AAGCTT	2 cut(s)	284, 998
HinfI	GANTC	3 cut(s)	344, 940, 1491
HpaII	CCGG	4 cut(s)	230, 434, 1014, 1053
HphI	GGTGA	3 cut(s)	244, 1433, 1463
Hpy166II	GTNNAC	1 cut(s)	661
Hpy188I	TCNGA	7 cut(s)	57, 336, 424, 643, 918, 1074, 1500
Hpy188III	TCNNGA	6 cut(s)	175, 544, 869, 1060, 1403, 1488
Hpy8I	GTNNAC	1 cut(s)	661
HpyAV	CCTTC	3 cut(s)	968, 1176, 1411
HpyCH4III	ACNGT	5 cut(s)	268, 493, 503, 743, 1478
HpyCH4V	TGCA	7 cut(s)	170, 413, 521, 632, 782, 1129, 1397
HpyF10VI	GCNNNNNNNGC	6 cut(s)	122, 167, 190, 964, 1223, 1294
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	6 cut(s)	178, 443, 611, 971, 1216, 1523
KpnI	GGTACC	1 cut(s)	1330
Ksp22I	TGATCA	1 cut(s)	865
Kzo9I	GATC	5 cut(s)	369, 416, 720, 865, 986
LmnI	GCTCC	4 cut(s)	328, 1405, 1454, 1462
LweI	GCATC	5 cut(s)	547, 619, 1028, 1078, 1213
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	5 cut(s)	371, 418, 722, 867, 988
MboI	GATC	5 cut(s)	369, 416, 720, 865, 986
MfeI	CAATTG	1 cut(s)	846
MflI	RGATCY	3 cut(s)	369, 720, 986
MhlI	GDGCHC	1 cut(s)	1459
MlsI	TGGCCA	1 cut(s)	1217
MluCI	AATT	5 cut(s)	587, 777, 846, 1032, 1114
MluNI	TGGCCA	1 cut(s)	1217
MmeI	TCCRAC	3 cut(s)	35, 748, 968
Mox20I	TGGCCA	1 cut(s)	1217
MscI	TGGCCA	1 cut(s)	1217
MseI	TTAA	1 cut(s)	1437
MslI	CAYNNNNRTG	3 cut(s)	444, 612, 735
Msp20I	TGGCCA	1 cut(s)	1217
MspA1I	CMGCKG	3 cut(s)	113, 215, 675
MspI	CCGG	4 cut(s)	230, 434, 1014, 1053
MspR9I	CCNGG	5 cut(s)	434, 435, 1015, 1053, 1120
MunI	CAATTG	1 cut(s)	846
Mva1269I	GAATGC	2 cut(s)	170, 888
MvaI	CCWGG	1 cut(s)	1120
MwoI	GCNNNNNNNGC	6 cut(s)	122, 167, 190, 964, 1223, 1294
NciI	CCSGG	4 cut(s)	434, 435, 1015, 1053
NcoI	CCATGG	1 cut(s)	1519
NdeII	GATC	5 cut(s)	369, 416, 720, 865, 986
NlaIII	CATG	6 cut(s)	178, 443, 611, 971, 1216, 1523
NlaIV	GGNNCC	3 cut(s)	988, 1328, 1487
NspI	RCATGY	1 cut(s)	443
PagI	TCATGA	1 cut(s)	174
PciI	ACATGT	1 cut(s)	439
PctI	GAATGC	2 cut(s)	170, 888
PfeI	GAWTC	3 cut(s)	344, 940, 1491
PpuMI	RGGWCCY	1 cut(s)	1485
PscI	ACATGT	1 cut(s)	439
Psp124BI	GAGCTC	1 cut(s)	1459
Psp5II	RGGWCCY	1 cut(s)	1485
Psp6I	CCWGG	1 cut(s)	1118
PspFI	CCCAGC	2 cut(s)	127, 560
PspGI	CCWGG	1 cut(s)	1118
PspN4I	GGNNCC	3 cut(s)	988, 1328, 1487
PspPI	GGNCC	5 cut(s)	223, 453, 592, 617, 1485
PspPPI	RGGWCCY	1 cut(s)	1485
PsrI	GAACNNNNNNTAC	2 cut(s)	1067, 1099
PsuI	RGATCY	3 cut(s)	369, 720, 986
PvuII	CAGCTG	2 cut(s)	113, 675
RsaI	GTAC	3 cut(s)	844, 1109, 1328
RsaNI	GTAC	3 cut(s)	843, 1108, 1327
RseI	CAYNNNNRTG	3 cut(s)	444, 612, 735
SacI	GAGCTC	1 cut(s)	1459
SaqAI	TTAA	1 cut(s)	1437
Sau3AI	GATC	5 cut(s)	369, 416, 720, 865, 986
Sau96I	GGNCC	5 cut(s)	223, 453, 592, 617, 1485
ScaI	AGTACT	1 cut(s)	1109
ScrFI	CCNGG	5 cut(s)	434, 435, 1015, 1053, 1120
SduI	GDGCHC	1 cut(s)	1459
SfaNI	GCATC	5 cut(s)	547, 619, 1028, 1078, 1213
SfcI	CTRYAG	3 cut(s)	364, 391, 1507
SinI	GGWCC	3 cut(s)	453, 617, 1485
SmaI	CCCGGG	1 cut(s)	435
SmiMI	CAYNNNNRTG	3 cut(s)	444, 612, 735
Sse9I	AATT	5 cut(s)	587, 777, 846, 1032, 1114
SsiI	CCGC	6 cut(s)	68, 71, 99, 215, 1246, 1307
SspI	AATATT	2 cut(s)	511, 1047
SstI	GAGCTC	1 cut(s)	1459
StyD4I	CCNGG	5 cut(s)	432, 433, 1013, 1051, 1118
StyI	CCWWGG	3 cut(s)	991, 1218, 1519
TaaI	ACNGT	5 cut(s)	268, 493, 503, 743, 1478
TaqI	TCGA	2 cut(s)	735, 1255
TasI	AATT	5 cut(s)	587, 777, 846, 1032, 1114
TatI	WGTACW	1 cut(s)	1107
TauI	GCSGC	4 cut(s)	71, 74, 102, 1249
TfiI	GAWTC	3 cut(s)	344, 940, 1491
Tru1I	TTAA	1 cut(s)	1437
Tru9I	TTAA	1 cut(s)	1437
TscAI	CASTG	1 cut(s)	508
TspMI	CCCGGG	1 cut(s)	433
TspRI	CASTG	1 cut(s)	508
VpaK11BI	GGWCC	3 cut(s)	453, 617, 1485
XapI	RAATTY	2 cut(s)	1032, 1114
XceI	RCATGY	1 cut(s)	443
XmaI	CCCGGG	1 cut(s)	433
ZrmI	AGTACT	1 cut(s)	1109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.