Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003391

Physical Location & Seq

Genomic Coordinates Reverse (-)

5043212 .. 5046278

Gene Structure 3067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g07680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGTTTCAGCTTTTTGGTATTGTGGGCTCCACTGGAAGAAAAGGAGTGATGGGTCGGAGTTGCTTGGCGGTGACTCTCATCGTTTTGGTTCTGTTTGGCGGCGTATCGTCCGCTGCCCCTACTGCCCCAGCTAAGATCGTTGGTGGGTTTTTCTCAAATGCTGCGTCTGCTTTCATGAAACGGGTGTGGTCACTCAAAACAACTACCAAAACAGCGGTTTCGGGCCGTCCAGTGATGAAGTTTGAGAGTGGGTTTAATGTGGAGACGGTGTTTGATGGAAGCAAGCTTGGTATTGAGCCTTACACTGTGGAGGTTTTGCCAAGTGGGGAGCTTCTGATTTTGGATTCTGCTAATAGCAACCTCTATAGGATCTCTTCCTCTCTGTCTCTGTACAGCAGACCAAAGCTGGTTGCAGGTTCCTCTGATGGACACCCGGGACATGTAGATGGGAGGACCAGAGAGGCAAGAATGAACCACCCAAAGGGGCTTACAGTTGATGACAGTGGAAACATTTATGTTGCAGACACAATGAATATGGCAATCAGGAAGATAAGCAATGCCGGGGTTACAACAATAGCAGGAGGGAAATCGGGCCGTGGGGGAAGCCATGTGGATGGACCAAGTGAAGATGCAAAGTTTTCTGATGACTTTGATGTGGTTTACATTGGAAGCAGCTGCTCCTTGCTCGTCATAGACAGAGGAAATCGAGCAATCAGGGAGATCCAACTACATTTCGATGACTGTGCTTATCAATATGGAAGTGGCTTCCCCCTTGGGATTGCAATGCTTGTTGGGGCTGGCTTCTTTGGTTATATGTTAGCATTGCTACAATGTAGAGTTGGTACAATTGTCTCTTCCCAAAATGATCACGAACCAATGAAGACAAGCATTCCTCCAAGTTCATACCACAAGCCTCTGAAATCAGTCAGGCCACCTTTGATTCCTGAAGATGAGCAGGAGAAGCAAGAAGAAGGCTTCTTAGGATCTCTTGGGAAGCTTTTGGTCAATGCCGGGGCATCTGGTATGGAAATTCTGGGGGCAATATTTCCAGGTTTCAGGAAAAAGCATCTGAACTATCAATACCAAAGTCAGCAGCAGGAGCAGCAACAGAAGCACCCAAATTCCTGGCCTGTGCAAGATAGCTATGTGATACCAGATGAGGATGAGCCACCTTCATTTGAAACCCGAACTCCCACCCCTCGCAAAACCTACCCATTCATGGCCAAGGATGCAGAAACAATCCATCAGTTGCGGCAAAGTCGAGTTTTCTATAATGGGTGGGATAATCTTCAGCAACAACAGCAGCAGCAGCAGATGGGAATGGTGAAGCTGTGGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

447

Amino Acids

48.73

Weight (kDa)

8.2

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70280 AT1G70280
fragaria_vesca	FvH4_4g34810 FvH4_4g34810 FvH4_6g50490 FvH4_6g50490
malus_domestica	MD09G1036000.v1.1 MD13G1089500.v1.1 MD16G1089700.v1.1 MD17G1037600.v1.1
prunus_persica	Prupe.1G256300_v2.0.a1 Prupe.3G281800_v2.0.a1 Prupe.3G281800_v2.0.a1
pyrus_communis	pycom111g02890 pycom13g07800 pycom16g07680 pycom17g03370
rosa_chinensis	RchiOBHm_Chr2g0170891 RchiOBHm_Chr4g0444151
rosa_laevigata	RLG00000021991
rosa_multiflora	Rmu_sc0009938.1_g000002 Rmu_sc0012638.1_g000012
rosa_roxburghii	Rroxscaffold_2G00080990 Rroxscaffold_5G00384740
rosa_rugosa	Rorug02G0552200 Rorug04G0350500
rosa_samantha	Rh2AG624900 Rh2BG635600 Rh2CG604300 Rh2DG647200 Rh4AG411100 Rh4BG422500 Rh4CG436900 Rh4DG417800
rosa_wichuraiana	Rw2G051760 Rw4G035320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	404
AciI	CCGC	5 cut(s)	68, 99, 111, 215, 1252
AclWI	GGATC	3 cut(s)	377, 715, 991
AcoI	YGGCCR	1 cut(s)	1221
AcsI	RAATTY	2 cut(s)	1029, 1120
AcuI	CTGAAG	2 cut(s)	966, 1274
AfaI	GTAC	2 cut(s)	392, 844
AfiI	CCNNNNNNNGG	2 cut(s)	481, 1219
AflIII	ACRYGT	1 cut(s)	439
AgsI	TTSAA	1 cut(s)	1181
AjnI	CCWGG	2 cut(s)	1048, 1124
AluBI	AGCT	9 cut(s)	10, 131, 286, 331, 406, 675, 997, 1143, 1330
AluI	AGCT	9 cut(s)	10, 131, 286, 331, 406, 675, 997, 1143, 1330
Alw26I	GTCTC	3 cut(s)	257, 390, 856
AlwI	GGATC	3 cut(s)	377, 715, 991
Ama87I	CYCGRG	1 cut(s)	433
AoxI	GGCC	5 cut(s)	223, 592, 929, 1127, 1221
ApeKI	GCWGC	9 cut(s)	113, 161, 672, 675, 1093, 1102, 1303, 1306, 1309
ApoI	RAATTY	2 cut(s)	1029, 1120
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
AspS9I	GGNCC	4 cut(s)	223, 453, 592, 617
AsuC2I	CCSGG	4 cut(s)	434, 435, 562, 1012
AsuHPI	GGTGA	2 cut(s)	82, 1336
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	2 cut(s)	453, 617
BaeI	ACNNNNGTAYC	2 cut(s)	834, 867
BalI	TGGCCA	1 cut(s)	1223
BanII	GRGCYC	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	887
BbvI	GCAGC	9 cut(s)	100, 148, 662, 684, 1105, 1114, 1315, 1318, 1321
BccI	CCATC	7 cut(s)	43, 269, 419, 440, 608, 1251, 1309
BceAI	ACGGC	2 cut(s)	210, 579
BcgI	CGANNNNNNTGC	2 cut(s)	725, 759
BciT130I	CCWGG	2 cut(s)	1050, 1126
BclI	TGATCA	1 cut(s)	865
BcnI	CCSGG	4 cut(s)	434, 435, 562, 1012
BcoDI	GTCTC	3 cut(s)	257, 390, 856
BfmI	CTRYAG	1 cut(s)	364
BfuAI	ACCTGC	1 cut(s)	404
Bme1390I	CCNGG	6 cut(s)	434, 435, 562, 1012, 1050, 1126
Bme18I	GGWCC	2 cut(s)	453, 617
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	4 cut(s)	223, 453, 592, 617
BmiI	GGNNCC	2 cut(s)	28, 418
BmrFI	CCNGG	6 cut(s)	434, 435, 562, 1012, 1050, 1126
BmsI	GCATC	4 cut(s)	619, 1025, 1075, 1219
BpiI	GAAGAC	1 cut(s)	887
BpuMI	CCSGG	4 cut(s)	434, 435, 562, 1012
BsaJI	CCNNGG	6 cut(s)	433, 561, 595, 772, 1011, 1224
BsaXI	ACNNNNNCTCC	4 cut(s)	254, 284, 1174, 1204
Bsc4I	CCNNNNNNNGG	2 cut(s)	481, 1219
Bse1I	ACTGG	2 cut(s)	37, 230
Bse3DI	GCAATG	3 cut(s)	562, 789, 821
BseBI	CCWGG	2 cut(s)	1050, 1126
BseDI	CCNNGG	6 cut(s)	433, 561, 595, 772, 1011, 1224
BseGI	GGATG	3 cut(s)	619, 1168, 1234
BseLI	CCNNNNNNNGG	2 cut(s)	481, 1219
BseMI	GCAATG	3 cut(s)	562, 789, 821
BseNI	ACTGG	2 cut(s)	37, 230
BseXI	GCAGC	9 cut(s)	100, 148, 662, 684, 1105, 1114, 1315, 1318, 1321
BseYI	CCCAGC	1 cut(s)	127
BshFI	GGCC	5 cut(s)	225, 594, 931, 1129, 1223
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	3 cut(s)	434, 561, 1011
BslFI	GGGAC	1 cut(s)	450
BslI	CCNNNNNNNGG	2 cut(s)	481, 1219
BsmAI	GTCTC	3 cut(s)	257, 390, 856
BsmBI	CGTCTC	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	450
BsmI	GAATGC	1 cut(s)	888
BsnI	GGCC	5 cut(s)	225, 594, 931, 1129, 1223
BsoBI	CYCGRG	1 cut(s)	433
Bsp1286I	GDGCHC	1 cut(s)	29
Bsp1407I	TGTACA	1 cut(s)	390
Bsp143I	GATC	5 cut(s)	135, 369, 720, 865, 983
BspACI	CCGC	5 cut(s)	68, 99, 111, 215, 1252
BspANI	GGCC	5 cut(s)	225, 594, 931, 1129, 1223
BspHI	TCATGA	1 cut(s)	174
BspLI	GGNNCC	2 cut(s)	28, 418
BspMI	ACCTGC	1 cut(s)	404
BspPI	GGATC	3 cut(s)	377, 715, 991
BsrDI	GCAATG	3 cut(s)	562, 789, 821
BsrGI	TGTACA	1 cut(s)	390
BsrI	ACTGG	2 cut(s)	37, 230
BssECI	CCNNGG	6 cut(s)	433, 561, 595, 772, 1011, 1224
BssMI	GATC	5 cut(s)	135, 369, 720, 865, 983
BssT1I	CCWWGG	2 cut(s)	772, 1224
Bst2UI	CCWGG	2 cut(s)	1050, 1126
Bst4CI	ACNGT	5 cut(s)	268, 307, 493, 503, 743
Bst6I	CTCTTC	2 cut(s)	379, 859
BstAUI	TGTACA	1 cut(s)	390
BstC8I	GCNNGC	2 cut(s)	284, 799
BstDEI	CTNAG	2 cut(s)	132, 979
BstDSI	CCRYGG	1 cut(s)	595
BstF5I	GGATG	3 cut(s)	619, 1168, 1234
BstKTI	GATC	5 cut(s)	138, 372, 723, 868, 986
BstMAI	GTCTC	3 cut(s)	257, 390, 856
BstMBI	GATC	5 cut(s)	135, 369, 720, 865, 983
BstMWI	GCNNNNNNNGC	9 cut(s)	122, 167, 961, 1099, 1102, 1111, 1229, 1300, 1309
BstNI	CCWGG	2 cut(s)	1050, 1126
BstNSI	RCATGY	1 cut(s)	443
BstSCI	CCNGG	6 cut(s)	432, 433, 560, 1010, 1048, 1124
BstSFI	CTRYAG	1 cut(s)	364
BstV1I	GCAGC	9 cut(s)	100, 148, 662, 684, 1105, 1114, 1315, 1318, 1321
BstV2I	GAAGAC	1 cut(s)	887
BstX2I	RGATCY	3 cut(s)	369, 720, 983
BstXI	CCANNNNNNTGG	2 cut(s)	614, 1125
BstYI	RGATCY	3 cut(s)	369, 720, 983
BsuRI	GGCC	5 cut(s)	225, 594, 931, 1129, 1223
BtgI	CCRYGG	1 cut(s)	595
BtsCI	GGATG	3 cut(s)	619, 1168, 1234
BtsIMutI	CAGTG	4 cut(s)	30, 237, 303, 508
BveI	ACCTGC	1 cut(s)	404
Cac8I	GCNNGC	2 cut(s)	284, 799
CciI	TCATGA	1 cut(s)	174
Cfr13I	GGNCC	4 cut(s)	223, 453, 592, 617
Cfr9I	CCCGGG	1 cut(s)	433
CseI	GACGC	1 cut(s)	153
Csp6I	GTAC	2 cut(s)	391, 843
CviAII	CATG	4 cut(s)	175, 440, 608, 1219
CviQI	GTAC	2 cut(s)	391, 843
DdeI	CTNAG	2 cut(s)	132, 979
DpnI	GATC	5 cut(s)	137, 371, 722, 867, 985
DpnII	GATC	5 cut(s)	135, 369, 720, 865, 983
EaeI	YGGCCR	1 cut(s)	1221
Eam1104I	CTCTTC	2 cut(s)	379, 859
EarI	CTCTTC	2 cut(s)	379, 859
Eco130I	CCWWGG	2 cut(s)	772, 1224
Eco24I	GRGCYC	1 cut(s)	29
Eco47I	GGWCC	2 cut(s)	453, 617
Eco57I	CTGAAG	2 cut(s)	966, 1274
Eco88I	CYCGRG	1 cut(s)	433
EcoRII	CCWGG	2 cut(s)	1048, 1124
EcoT14I	CCWWGG	2 cut(s)	772, 1224
EcoT38I	GRGCYC	1 cut(s)	29
ErhI	CCWWGG	2 cut(s)	772, 1224
Esp3I	CGTCTC	1 cut(s)	257
FaeI	CATG	4 cut(s)	178, 443, 611, 1222
FaqI	GGGAC	1 cut(s)	450
FatI	CATG	4 cut(s)	174, 439, 607, 1218
FbaI	TGATCA	1 cut(s)	865
FokI	GGATG	3 cut(s)	626, 1175, 1241
FriOI	GRGCYC	1 cut(s)	29
GsaI	CCCAGC	1 cut(s)	131
HaeIII	GGCC	5 cut(s)	225, 594, 931, 1129, 1223
HapII	CCGG	3 cut(s)	434, 561, 1011
HgaI	GACGC	1 cut(s)	153
Hin1II	CATG	4 cut(s)	178, 443, 611, 1222
HindIII	AAGCTT	2 cut(s)	284, 995
HinfI	GANTC	3 cut(s)	73, 344, 940
HpaII	CCGG	3 cut(s)	434, 561, 1011
HphI	GGTGA	2 cut(s)	82, 1336
Hpy166II	GTNNAC	1 cut(s)	661
Hpy188I	TCNGA	6 cut(s)	57, 336, 424, 643, 918, 1071
Hpy188III	TCNNGA	5 cut(s)	175, 544, 869, 944, 1057
Hpy8I	GTNNAC	1 cut(s)	661
HpyAV	CCTTC	2 cut(s)	965, 1182
HpyCH4III	ACNGT	5 cut(s)	268, 307, 493, 503, 743
HpyCH4V	TGCA	6 cut(s)	413, 521, 632, 782, 1135, 1232
HpyF10VI	GCNNNNNNNGC	9 cut(s)	122, 167, 961, 1099, 1102, 1111, 1229, 1300, 1309
HpyF3I	CTNAG	2 cut(s)	132, 979
Hsp92II	CATG	4 cut(s)	178, 443, 611, 1222
Ksp22I	TGATCA	1 cut(s)	865
Kzo9I	GATC	5 cut(s)	135, 369, 720, 865, 983
LmnI	GCTCC	4 cut(s)	32, 328, 683, 1099
Lsp1109I	GCAGC	9 cut(s)	100, 148, 662, 684, 1105, 1114, 1315, 1318, 1321
LweI	GCATC	4 cut(s)	619, 1025, 1075, 1219
MaeIII	GTNAC	3 cut(s)	70, 189, 565
MalI	GATC	5 cut(s)	137, 371, 722, 867, 985
MboI	GATC	5 cut(s)	135, 369, 720, 865, 983
MboII	GAAGA	9 cut(s)	48, 366, 559, 638, 846, 892, 959, 980, 1280
MfeI	CAATTG	1 cut(s)	846
MflI	RGATCY	3 cut(s)	369, 720, 983
MhlI	GDGCHC	1 cut(s)	29
MlsI	TGGCCA	1 cut(s)	1223
MluCI	AATT	3 cut(s)	846, 1029, 1120
MluNI	TGGCCA	1 cut(s)	1223
MlyI	GAGTC	1 cut(s)	67
MmeI	TCCRAC	2 cut(s)	35, 748
Mox20I	TGGCCA	1 cut(s)	1223
MscI	TGGCCA	1 cut(s)	1223
MseI	TTAA	1 cut(s)	255
MslI	CAYNNNNRTG	3 cut(s)	444, 612, 735
Msp20I	TGGCCA	1 cut(s)	1223
MspA1I	CMGCKG	3 cut(s)	113, 215, 675
MspI	CCGG	3 cut(s)	434, 561, 1011
MspR9I	CCNGG	6 cut(s)	434, 435, 562, 1012, 1050, 1126
MunI	CAATTG	1 cut(s)	846
Mva1269I	GAATGC	1 cut(s)	888
MvaI	CCWGG	2 cut(s)	1050, 1126
MwoI	GCNNNNNNNGC	9 cut(s)	122, 167, 961, 1099, 1102, 1111, 1229, 1300, 1309
NciI	CCSGG	4 cut(s)	434, 435, 562, 1012
NdeII	GATC	5 cut(s)	135, 369, 720, 865, 983
NlaIII	CATG	4 cut(s)	178, 443, 611, 1222
NlaIV	GGNNCC	2 cut(s)	28, 418
NmuCI	GTSAC	2 cut(s)	70, 189
NspI	RCATGY	1 cut(s)	443
PagI	TCATGA	1 cut(s)	174
PciI	ACATGT	1 cut(s)	439
PctI	GAATGC	1 cut(s)	888
PfeI	GAWTC	2 cut(s)	344, 940
PleI	GAGTC	1 cut(s)	67
PpsI	GAGTC	1 cut(s)	67
PscI	ACATGT	1 cut(s)	439
Psp6I	CCWGG	2 cut(s)	1048, 1124
PspFI	CCCAGC	1 cut(s)	127
PspGI	CCWGG	2 cut(s)	1048, 1124
PspN4I	GGNNCC	2 cut(s)	28, 418
PspPI	GGNCC	4 cut(s)	223, 453, 592, 617
PsrI	GAACNNNNNNTAC	2 cut(s)	1064, 1096
PsuI	RGATCY	3 cut(s)	369, 720, 983
PvuII	CAGCTG	1 cut(s)	675
RsaI	GTAC	2 cut(s)	392, 844
RsaNI	GTAC	2 cut(s)	391, 843
RseI	CAYNNNNRTG	3 cut(s)	444, 612, 735
SaqAI	TTAA	1 cut(s)	255
Sau3AI	GATC	5 cut(s)	135, 369, 720, 865, 983
Sau96I	GGNCC	4 cut(s)	223, 453, 592, 617
SchI	GAGTC	1 cut(s)	67
ScrFI	CCNGG	6 cut(s)	434, 435, 562, 1012, 1050, 1126
SduI	GDGCHC	1 cut(s)	29
SfaNI	GCATC	4 cut(s)	619, 1025, 1075, 1219
SfcI	CTRYAG	1 cut(s)	364
SinI	GGWCC	2 cut(s)	453, 617
SmaI	CCCGGG	1 cut(s)	435
SmiMI	CAYNNNNRTG	3 cut(s)	444, 612, 735
Sse9I	AATT	3 cut(s)	846, 1029, 1120
SsiI	CCGC	5 cut(s)	68, 99, 111, 215, 1252
SspI	AATATT	1 cut(s)	1044
StyD4I	CCNGG	6 cut(s)	432, 433, 560, 1010, 1048, 1124
StyI	CCWWGG	2 cut(s)	772, 1224
TaaI	ACNGT	5 cut(s)	268, 307, 493, 503, 743
TaqI	TCGA	3 cut(s)	706, 735, 1261
TasI	AATT	3 cut(s)	846, 1029, 1120
TatI	WGTACW	1 cut(s)	390
TauI	GCSGC	2 cut(s)	102, 1255
TfiI	GAWTC	2 cut(s)	344, 940
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	4 cut(s)	37, 237, 310, 508
TseFI	GTSAC	2 cut(s)	70, 189
TseI	GCWGC	9 cut(s)	113, 161, 672, 675, 1093, 1102, 1303, 1306, 1309
Tsp45I	GTSAC	2 cut(s)	70, 189
TspDTI	ATGAA	9 cut(s)	163, 191, 251, 485, 545, 891, 893, 1164, 1207
TspMI	CCCGGG	1 cut(s)	433
TspRI	CASTG	4 cut(s)	37, 237, 310, 508
VpaK11BI	GGWCC	2 cut(s)	453, 617
XapI	RAATTY	2 cut(s)	1029, 1120
XceI	RCATGY	1 cut(s)	443
XmaI	CCCGGG	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.