Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003391

Physical Location & Seq

Genomic Coordinates Reverse (-)

6274564 .. 6278031

Gene Structure 3468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1089500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1542 bp

ATGTTTCAGCCTTTTTGTGTTGTGGCCTCCATTGGAAGAAAAGGAGTAATGGGTCGGAGTTTATGGGCGGCGGCTCTCATCGTTCTGGTTATGTTTGGCGGCGTCTCCTCAGCTGCCACTACTGCCCCAGCAAAGATTGTTGGTGGGTTTTTCTCAAATGCTGCGTCTGCATTCATGAAATGGCTGTGGTCGCTCAAAGCAACTACCAAAACAGCGGTTTCGGGCCGTCCGGTGATGAAGTTTGAGAGTGGGTTCAATGTGGAGACGGTGTTTGATGGAAGCAAGCTTGGTATTGAGCCTTACTCTGTGGAGGTTTTGCCAAGTGGGGAGCTTCTGATTTTGGATTCTGCTAATAGCAACCTCTATAGGATCTCTTCCTCTCTCTCTCTGTACAGCAGACCAAAGCTGGTTGCAGGATCTTCTGATGGATACCCGGGTCATGTAGATGGGAGGACCAGAGAGGCAAGAATGAATCACCCAAAGGGGTTTACAGTTGATGACAGTGGAAATATTTATGTTGCAGACACAATGAATATGGCAATCAGGAAGATAAGCGATGCTGGGGTTACAACAATAGCAGGAGGGAAATTGGGCCGTGGGGGAAGCCATGTGGATGGACCAAGTGAAGATGCAAAGTTTTCGGACGATTTTGATGTGGTTTATATTGGAAGCAGCTGCTCTTTACTTGTTATAGACAGAGGAAATCAAGCAATCAGGGAGATCCAACTACATTTCGATGACTGTGCTTATCAATATGGAAGTGGTTTCCCTCTTGGGATTGCAATGCTTGTTGGGGCTGGCTTCTTTGGTTATATGTTAGCATTGCTACAACGTAGAGTTGGTACAATTGTCTCTTCACAAAATGATCAAGAGCCAATGAAGACGAGCATTCCTCCAAGTTCATACCAGAAGCCTCTGAAACCAGTCAGGCCACCTTTGATTCCAACTGAAGATGAGCAGGAGAAGCATGAAGAAGGCTTCTTTGGATCTCTTGGGAAGCTTTTGGTCAATGCTGGGGCATCTGGTATGGAAATTCTTGGGGCAATATTTCCCGGTTTCAGGAAAAAACATCTGAACTATCAATACCAAAGTCAGCAGCAACAGAAGTACTCAAATTCCTGGCCTGTGCAAGATAGCTATGTGATACCAGATGAAGATGAGCCACCTTCCATTGAAACCCGAACTCCCACCCCTCGCAAAACCTACCCATTCATGGCCAAGGATGCTGAAACAATCCATCAGTTGCGGCAAAGTCGAGTTTTCTCTAATGGATGGGATAATCTTCAGCAGCAACAGCAGCAGCAGCAAAAACAACCACAGCAGCATTATCATCGGTACCAATCATCAACCCCAAATACTATCTATGAGCAGAGTAGCGAAAATACCACCGAGGTTGTGTTTGGTGCAGTTCAGGAGCAGGATGGGAAGGGTGAAGCTGTGGTCATTAAGCCTATTGATTATGGAGCTCCATTGTTCAATCATCACAGTTTCGGGTCCCGAATCAATCCGAACGGCTATAGTTATACCCATGGATGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NHL

Protein Analysis

514

Amino Acids

56.34

Weight (kDa)

6.65

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G70280 AT1G70280
fragaria_vesca	FvH4_4g34810 FvH4_4g34810 FvH4_6g50490 FvH4_6g50490
malus_domestica	MD09G1036000.v1.1 MD13G1089500.v1.1 MD16G1089700.v1.1 MD17G1037600.v1.1
prunus_persica	Prupe.1G256300_v2.0.a1 Prupe.3G281800_v2.0.a1 Prupe.3G281800_v2.0.a1
pyrus_communis	pycom111g02890 pycom13g07800 pycom16g07680 pycom17g03370
rosa_chinensis	RchiOBHm_Chr2g0170891 RchiOBHm_Chr4g0444151
rosa_laevigata	RLG00000021991
rosa_multiflora	Rmu_sc0009938.1_g000002 Rmu_sc0012638.1_g000012
rosa_roxburghii	Rroxscaffold_2G00080990 Rroxscaffold_5G00384740
rosa_rugosa	Rorug02G0552200 Rorug04G0350500
rosa_samantha	Rh2AG624900 Rh2BG635600 Rh2CG604300 Rh2DG647200 Rh4AG411100 Rh4BG422500 Rh4CG436900 Rh4DG417800
rosa_wichuraiana	Rw2G051760 Rw4G035320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1335
AccB1I	GGYRCC	1 cut(s)	1335
AciI	CCGC	5 cut(s)	68, 71, 99, 215, 1246
AclWI	GGATC	4 cut(s)	377, 424, 715, 994
AcoI	YGGCCR	1 cut(s)	1215
AcsI	RAATTY	2 cut(s)	1032, 1114
AcuI	CTGAAG	2 cut(s)	969, 1268
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	4 cut(s)	392, 844, 1109, 1337
AfiI	CCNNNNNNNGG	2 cut(s)	1059, 1213
AgsI	TTSAA	3 cut(s)	256, 1175, 1477
AjnI	CCWGG	1 cut(s)	1118
AjuI	GAANNNNNNNTTGG	2 cut(s)	966, 998
AluBI	AGCT	9 cut(s)	113, 286, 331, 406, 675, 1000, 1137, 1436, 1466
AluI	AGCT	9 cut(s)	113, 286, 331, 406, 675, 1000, 1137, 1436, 1466
Alw21I	GWGCWC	1 cut(s)	1468
Alw26I	GTCTC	3 cut(s)	109, 257, 856
AlwI	GGATC	4 cut(s)	377, 424, 715, 994
Ama87I	CYCGRG	1 cut(s)	433
AoxI	GGCC	6 cut(s)	24, 223, 592, 929, 1121, 1215
ApoI	RAATTY	2 cut(s)	1032, 1114
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
Asp718I	GGTACC	1 cut(s)	1335
AspS9I	GGNCC	5 cut(s)	223, 453, 592, 617, 1494
AsuC2I	CCSGG	3 cut(s)	434, 435, 1053
AsuHPI	GGTGA	3 cut(s)	244, 467, 1442
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	3 cut(s)	453, 617, 1494
BaeI	ACNNNNGTAYC	4 cut(s)	421, 454, 834, 867
BalI	TGGCCA	1 cut(s)	1217
BanI	GGYRCC	1 cut(s)	1335
BanII	GRGCYC	1 cut(s)	1468
BbsI	GAAGAC	1 cut(s)	887
Bbv12I	GWGCWC	1 cut(s)	1468
BbvCI	CCTCAGC	1 cut(s)	109
BccI	CCATC	7 cut(s)	269, 419, 440, 608, 1245, 1266, 1415
BceAI	ACGGC	3 cut(s)	210, 579, 1528
BcgI	CGANNNNNNTGC	6 cut(s)	621, 655, 725, 759, 1313, 1347
BciT130I	CCWGG	1 cut(s)	1120
BciVI	GTATCC	1 cut(s)	422
BclI	TGATCA	1 cut(s)	865
BcnI	CCSGG	3 cut(s)	434, 435, 1053
BcoDI	GTCTC	3 cut(s)	109, 257, 856
BfmI	CTRYAG	2 cut(s)	364, 1516
BfuI	GTATCC	1 cut(s)	422
BmcAI	AGTACT	1 cut(s)	1109
Bme1390I	CCNGG	4 cut(s)	434, 435, 1053, 1120
Bme18I	GGWCC	3 cut(s)	453, 617, 1494
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	5 cut(s)	223, 453, 592, 617, 1494
BmiI	GGNNCC	3 cut(s)	1337, 1495, 1496
BmrFI	CCNGG	4 cut(s)	434, 435, 1053, 1120
BmsI	GCATC	4 cut(s)	547, 619, 1028, 1213
BpiI	GAAGAC	1 cut(s)	887
BplI	GAGNNNNNCTC	4 cut(s)	287, 319, 877, 909
Bpu10I	CCTNAGC	1 cut(s)	109
BpuMI	CCSGG	3 cut(s)	434, 435, 1053
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	5 cut(s)	433, 595, 1218, 1389, 1528
BsaWI	WCCGGW	1 cut(s)	229
BsaXI	ACNNNNNCTCC	4 cut(s)	254, 284, 1168, 1198
Bsc4I	CCNNNNNNNGG	2 cut(s)	1059, 1213
Bse1I	ACTGG	1 cut(s)	923
Bse3DI	GCAATG	2 cut(s)	789, 821
BseBI	CCWGG	1 cut(s)	1120
BseDI	CCNNGG	5 cut(s)	433, 595, 1218, 1389, 1528
BseGI	GGATG	5 cut(s)	619, 1228, 1277, 1426, 1538
BseLI	CCNNNNNNNGG	2 cut(s)	1059, 1213
BseMI	GCAATG	2 cut(s)	789, 821
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	923
BseRI	GAGGAG	1 cut(s)	97
BseYI	CCCAGC	3 cut(s)	127, 560, 1013
BsgI	GTGCAG	1 cut(s)	1425
BshFI	GGCC	6 cut(s)	26, 225, 594, 931, 1123, 1217
BshNI	GGYRCC	1 cut(s)	1335
BsiHKAI	GWGCWC	1 cut(s)	1468
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	3 cut(s)	230, 434, 1053
BslFI	GGGAC	1 cut(s)	1480
BslI	CCNNNNNNNGG	2 cut(s)	1059, 1213
BsmAI	GTCTC	3 cut(s)	109, 257, 856
BsmBI	CGTCTC	2 cut(s)	109, 257
BsmFI	GGGAC	1 cut(s)	1480
BsmI	GAATGC	2 cut(s)	170, 888
BsnI	GGCC	6 cut(s)	26, 225, 594, 931, 1123, 1217
BsoBI	CYCGRG	1 cut(s)	433
Bsp1286I	GDGCHC	1 cut(s)	1468
Bsp1407I	TGTACA	1 cut(s)	390
Bsp143I	GATC	5 cut(s)	369, 416, 720, 865, 986
Bsp19I	CCATGG	1 cut(s)	1528
BspACI	CCGC	5 cut(s)	68, 71, 99, 215, 1246
BspANI	GGCC	6 cut(s)	26, 225, 594, 931, 1123, 1217
BspCNI	CTCAG	1 cut(s)	122
BspHI	TCATGA	1 cut(s)	174
BspLI	GGNNCC	3 cut(s)	1337, 1495, 1496
BspPI	GGATC	4 cut(s)	377, 424, 715, 994
BspT107I	GGYRCC	1 cut(s)	1335
BsrDI	GCAATG	2 cut(s)	789, 821
BsrGI	TGTACA	1 cut(s)	390
BsrI	ACTGG	1 cut(s)	923
BssECI	CCNNGG	5 cut(s)	433, 595, 1218, 1389, 1528
BssMI	GATC	5 cut(s)	369, 416, 720, 865, 986
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	2 cut(s)	1218, 1528
Bst2UI	CCWGG	1 cut(s)	1120
Bst4CI	ACNGT	5 cut(s)	268, 493, 503, 743, 1487
Bst6I	CTCTTC	2 cut(s)	379, 859
BstACI	GRCGYC	1 cut(s)	102
BstAUI	TGTACA	1 cut(s)	390
BstC8I	GCNNGC	2 cut(s)	284, 799
BstDEI	CTNAG	1 cut(s)	109
BstDSI	CCRYGG	2 cut(s)	595, 1528
BstF5I	GGATG	5 cut(s)	619, 1228, 1277, 1426, 1538
BstKTI	GATC	5 cut(s)	372, 419, 723, 868, 989
BstMAI	GTCTC	3 cut(s)	109, 257, 856
BstMBI	GATC	5 cut(s)	369, 416, 720, 865, 986
BstMWI	GCNNNNNNNGC	8 cut(s)	122, 167, 190, 964, 1223, 1294, 1297, 1303
BstNI	CCWGG	1 cut(s)	1120
BstSCI	CCNGG	4 cut(s)	432, 433, 1051, 1118
BstSFI	CTRYAG	2 cut(s)	364, 1516
BstV2I	GAAGAC	1 cut(s)	887
BstX2I	RGATCY	4 cut(s)	369, 416, 720, 986
BstXI	CCANNNNNNTGG	1 cut(s)	614
BstYI	RGATCY	4 cut(s)	369, 416, 720, 986
BsuI	GTATCC	1 cut(s)	422
BsuRI	GGCC	6 cut(s)	26, 225, 594, 931, 1123, 1217
BtgI	CCRYGG	2 cut(s)	595, 1528
BtgZI	GCGATG	1 cut(s)	570
BtsCI	GGATG	5 cut(s)	619, 1228, 1277, 1426, 1538
BtsIMutI	CAGTG	1 cut(s)	508
Cac8I	GCNNGC	2 cut(s)	284, 799
CciI	TCATGA	1 cut(s)	174
Cfr13I	GGNCC	5 cut(s)	223, 453, 592, 617, 1494
Cfr9I	CCCGGG	1 cut(s)	433
CseI	GACGC	2 cut(s)	91, 153
Csp6I	GTAC	4 cut(s)	391, 843, 1108, 1336
CspCI	CAANNNNNGTGG	2 cut(s)	1375, 1410
CviAII	CATG	6 cut(s)	175, 440, 608, 968, 1213, 1529
CviQI	GTAC	4 cut(s)	391, 843, 1108, 1336
DdeI	CTNAG	1 cut(s)	109
DpnI	GATC	5 cut(s)	371, 418, 722, 867, 988
DpnII	GATC	5 cut(s)	369, 416, 720, 865, 986
EaeI	YGGCCR	1 cut(s)	1215
Eam1104I	CTCTTC	2 cut(s)	379, 859
EarI	CTCTTC	2 cut(s)	379, 859
Ecl136II	GAGCTC	1 cut(s)	1466
Eco130I	CCWWGG	2 cut(s)	1218, 1528
Eco24I	GRGCYC	1 cut(s)	1468
Eco47I	GGWCC	3 cut(s)	453, 617, 1494
Eco53kI	GAGCTC	1 cut(s)	1466
Eco57I	CTGAAG	2 cut(s)	969, 1268
Eco88I	CYCGRG	1 cut(s)	433
EcoICRI	GAGCTC	1 cut(s)	1466
EcoO109I	RGGNCCY	1 cut(s)	1494
EcoRII	CCWGG	1 cut(s)	1118
EcoT14I	CCWWGG	2 cut(s)	1218, 1528
EcoT38I	GRGCYC	1 cut(s)	1468
ErhI	CCWWGG	2 cut(s)	1218, 1528
Esp3I	CGTCTC	2 cut(s)	109, 257
FaeI	CATG	6 cut(s)	178, 443, 611, 971, 1216, 1532
FaqI	GGGAC	1 cut(s)	1480
FatI	CATG	6 cut(s)	174, 439, 607, 967, 1212, 1528
FbaI	TGATCA	1 cut(s)	865
FokI	GGATG	4 cut(s)	626, 1235, 1284, 1433
FriOI	GRGCYC	1 cut(s)	1468
GsaI	CCCAGC	3 cut(s)	131, 564, 1017
HaeIII	GGCC	6 cut(s)	26, 225, 594, 931, 1123, 1217
HapII	CCGG	3 cut(s)	230, 434, 1053
HgaI	GACGC	2 cut(s)	91, 153
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	6 cut(s)	178, 443, 611, 971, 1216, 1532
HindIII	AAGCTT	2 cut(s)	284, 998
HinfI	GANTC	4 cut(s)	344, 472, 940, 1500
HpaII	CCGG	3 cut(s)	230, 434, 1053
HphI	GGTGA	3 cut(s)	244, 467, 1442
Hpy166II	GTNNAC	1 cut(s)	489
Hpy188I	TCNGA	7 cut(s)	57, 336, 424, 643, 918, 1074, 1509
Hpy188III	TCNNGA	6 cut(s)	175, 544, 869, 1060, 1412, 1497
Hpy8I	GTNNAC	1 cut(s)	489
HpyAV	CCTTC	3 cut(s)	968, 1176, 1420
HpyCH4III	ACNGT	5 cut(s)	268, 493, 503, 743, 1487
HpyCH4IV	ACGT	1 cut(s)	832
HpyCH4V	TGCA	7 cut(s)	170, 413, 521, 632, 782, 1129, 1406
HpyF10VI	GCNNNNNNNGC	8 cut(s)	122, 167, 190, 964, 1223, 1294, 1297, 1303
HpyF3I	CTNAG	1 cut(s)	109
HpySE526I	ACGT	1 cut(s)	832
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	6 cut(s)	178, 443, 611, 971, 1216, 1532
KflI	GGGWCCC	1 cut(s)	1494
KpnI	GGTACC	1 cut(s)	1339
Ksp22I	TGATCA	1 cut(s)	865
Kzo9I	GATC	5 cut(s)	369, 416, 720, 865, 986
LmnI	GCTCC	4 cut(s)	328, 1414, 1463, 1471
LweI	GCATC	4 cut(s)	547, 619, 1028, 1213
MaeII	ACGT	1 cut(s)	832
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	5 cut(s)	371, 418, 722, 867, 988
MboI	GATC	5 cut(s)	369, 416, 720, 865, 986
MfeI	CAATTG	1 cut(s)	846
MflI	RGATCY	4 cut(s)	369, 416, 720, 986
MhlI	GDGCHC	1 cut(s)	1468
MlsI	TGGCCA	1 cut(s)	1217
MluCI	AATT	4 cut(s)	587, 846, 1032, 1114
MluNI	TGGCCA	1 cut(s)	1217
MmeI	TCCRAC	3 cut(s)	35, 748, 968
Mox20I	TGGCCA	1 cut(s)	1217
MscI	TGGCCA	1 cut(s)	1217
MseI	TTAA	1 cut(s)	1446
MslI	CAYNNNNRTG	3 cut(s)	444, 612, 735
Msp20I	TGGCCA	1 cut(s)	1217
MspA1I	CMGCKG	3 cut(s)	113, 215, 675
MspI	CCGG	3 cut(s)	230, 434, 1053
MspR9I	CCNGG	4 cut(s)	434, 435, 1053, 1120
MunI	CAATTG	1 cut(s)	846
Mva1269I	GAATGC	2 cut(s)	170, 888
MvaI	CCWGG	1 cut(s)	1120
MwoI	GCNNNNNNNGC	8 cut(s)	122, 167, 190, 964, 1223, 1294, 1297, 1303
NciI	CCSGG	3 cut(s)	434, 435, 1053
NcoI	CCATGG	1 cut(s)	1528
NdeII	GATC	5 cut(s)	369, 416, 720, 865, 986
NlaIII	CATG	6 cut(s)	178, 443, 611, 971, 1216, 1532
NlaIV	GGNNCC	3 cut(s)	1337, 1495, 1496
PagI	TCATGA	1 cut(s)	174
PctI	GAATGC	2 cut(s)	170, 888
PfeI	GAWTC	4 cut(s)	344, 472, 940, 1500
PpuMI	RGGWCCY	1 cut(s)	1494
Psp124BI	GAGCTC	1 cut(s)	1468
Psp5II	RGGWCCY	1 cut(s)	1494
Psp6I	CCWGG	1 cut(s)	1118
PspFI	CCCAGC	3 cut(s)	127, 560, 1013
PspGI	CCWGG	1 cut(s)	1118
PspN4I	GGNNCC	3 cut(s)	1337, 1495, 1496
PspPI	GGNCC	5 cut(s)	223, 453, 592, 617, 1494
PspPPI	RGGWCCY	1 cut(s)	1494
PsrI	GAACNNNNNNTAC	2 cut(s)	1067, 1099
PsuI	RGATCY	4 cut(s)	369, 416, 720, 986
PvuII	CAGCTG	2 cut(s)	113, 675
RsaI	GTAC	4 cut(s)	392, 844, 1109, 1337
RsaNI	GTAC	4 cut(s)	391, 843, 1108, 1336
RseI	CAYNNNNRTG	3 cut(s)	444, 612, 735
SacI	GAGCTC	1 cut(s)	1468
SaqAI	TTAA	1 cut(s)	1446
Sau3AI	GATC	5 cut(s)	369, 416, 720, 865, 986
Sau96I	GGNCC	5 cut(s)	223, 453, 592, 617, 1494
ScaI	AGTACT	1 cut(s)	1109
ScrFI	CCNGG	4 cut(s)	434, 435, 1053, 1120
SduI	GDGCHC	1 cut(s)	1468
SfaNI	GCATC	4 cut(s)	547, 619, 1028, 1213
SfcI	CTRYAG	2 cut(s)	364, 1516
SinI	GGWCC	3 cut(s)	453, 617, 1494
SmaI	CCCGGG	1 cut(s)	435
SmiMI	CAYNNNNRTG	3 cut(s)	444, 612, 735
Sse9I	AATT	4 cut(s)	587, 846, 1032, 1114
SsiI	CCGC	5 cut(s)	68, 71, 99, 215, 1246
SspI	AATATT	2 cut(s)	511, 1047
SstI	GAGCTC	1 cut(s)	1468
StyD4I	CCNGG	4 cut(s)	432, 433, 1051, 1118
StyI	CCWWGG	2 cut(s)	1218, 1528
TaaI	ACNGT	5 cut(s)	268, 493, 503, 743, 1487
TaiI	ACGT	1 cut(s)	835
TaqI	TCGA	2 cut(s)	735, 1255
TasI	AATT	4 cut(s)	587, 846, 1032, 1114
TatI	WGTACW	2 cut(s)	390, 1107
TauI	GCSGC	4 cut(s)	71, 74, 102, 1249
TfiI	GAWTC	4 cut(s)	344, 472, 940, 1500
Tru1I	TTAA	1 cut(s)	1446
Tru9I	TTAA	1 cut(s)	1446
TscAI	CASTG	1 cut(s)	508
TspMI	CCCGGG	1 cut(s)	433
TspRI	CASTG	1 cut(s)	508
VpaK11BI	GGWCC	3 cut(s)	453, 617, 1494
XapI	RAATTY	2 cut(s)	1032, 1114
XmaI	CCCGGG	1 cut(s)	433
ZrmI	AGTACT	1 cut(s)	1109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.