Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001823

Physical Location & Seq

Genomic Coordinates Forward (+)

1496370 .. 1496669

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g02452.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGAGCTATACATGTGTCACTACCCTTTGCTTCTTAAAGGTCAGAGCAAAGATCGGACCTCCCTTATGATGACTATCTGTTTTGGAGAGGCACCGTGCTTGCCGGAGGGTGCGTCGGAAGACTTCCGGAGCTTTATTGAGTGCTGCATGCACAAGGACGCCGCCAAGAGGTGGACAGCGGCTCAGCTCTTGACCCACCCATTCGTCTGCAAGGTTCAATCCGAGGAGTGCAAACCTAGTTTGGTGAACAAGAAACGCAAACGAGACGATAATGATGATGGTGATGATGGTGACGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000160 GO:0000165 GO:0000187 GO:0001101 GO:0001932 GO:0001934 GO:0002229 GO:0002239 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004708 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006464 GO:0006468 GO:0006725 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0007568 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009403 GO:0009404 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009627 GO:0009628 GO:0009651 GO:0009692 GO:0009693 GO:0009700 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009755 GO:0009791 GO:0009814 GO:0009838 GO:0009862 GO:0009863 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009914 GO:0009926 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010120 GO:0010150 GO:0010227 GO:0010229 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010817 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019207 GO:0019209 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019748 GO:0019887 GO:0022414 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030234 GO:0030295 GO:0031098 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033674 GO:0034641 GO:0035556 GO:0035690 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0042493 GO:0042742 GO:0043085 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043449 GO:0043450 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044272 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0045087 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0046217 GO:0046483 GO:0046677 GO:0046777 GO:0048366 GO:0048367 GO:0048437 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0051726 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071369 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0071900 GO:0071902 GO:0080090 GO:0090567 GO:0090693 GO:0098542 GO:0098772 GO:0099402 GO:0140096 GO:1900673 GO:1900674 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

100

Amino Acids

11.28

Weight (kDa)

5.54

Isoelectric Point (pI)

90.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18350 AT1G73500 AT3G06230
fragaria_vesca	FvH4_5g02450 FvH4_5g02452 FvH4_5g02470 FvH4_5g17690
malus_domestica	MD06G1232600.v1.1 MD13G1223400.v1.1 MD14G1239400.v1.1 MD16G1227900.v1.1 MD16G1228300.v1.1
prunus_persica	Prupe.1G058300_v2.0.a1 Prupe.1G082800_v2.0.a1 Prupe.1G088400_v2.0.a1 Prupe.1G191900_v2.0.a1 Prupe.5G236900_v2.0.a1
pyrus_communis	pycom13g19740
rosa_chinensis	RchiOBHm_Chr5g0040641 RchiOBHm_Chr7g0177961 RchiOBHm_Chr7g0197661
rosa_laevigata	RLG00000003920 RLG00000003933 RLG00000005487 RLG00000009687
rosa_multiflora	Rmu_sc0002154.1_g000010 Rmu_sc0003916.1_g000020 Rmu_sc0006732.1_g000005
rosa_roxburghii	Rroxscaffold_3G00258300 Rroxscaffold_3G00258400 Rroxscaffold_5G00339620 Rroxscaffold_5G00339630
rosa_rugosa	Rorug06G0411800 Rorug07G0040300 Rorug07G0042200
rosa_samantha	Rh4CG058000 Rh5BG277200 Rh7AG010700 Rh7BG010700 Rh7BG168700 Rh7CG011100 Rh7CG175000 Rh7DG010800 Rh7DG168300
rosa_wichuraiana	Rw5G025540 Rw7G000900 Rw7G014500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	91
AccB7I	CCANNNNNTGG	1 cut(s)	171
AccIII	TCCGGA	1 cut(s)	126
AciI	CCGC	2 cut(s)	162, 179
AcyI	GRCGYC	1 cut(s)	159
AfiI	CCNNNNNNNGG	2 cut(s)	168, 171
AflIII	ACRYGT	2 cut(s)	12, 294
AgsI	TTSAA	1 cut(s)	218
AjiI	CACGTC	1 cut(s)	295
AluBI	AGCT	3 cut(s)	7, 132, 187
AluI	AGCT	3 cut(s)	7, 132, 187
Alw26I	GTCTC	1 cut(s)	258
Aor13HI	TCCGGA	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	2 cut(s)	256, 293
AvaII	GGWCC	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	2 cut(s)	272, 281
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	1 cut(s)	237
BisI	GCNGC	3 cut(s)	145, 162, 180
BlpI	GCTNAGC	1 cut(s)	183
BlsI	GCNGC	3 cut(s)	146, 163, 181
Bme18I	GGWCC	1 cut(s)	57
BmgBI	CACGTC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	126
Bpu1102I	GCTNAGC	1 cut(s)	183
BsaBI	GATNNNNATC	1 cut(s)	74
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	222
BsaWI	WCCGGW	1 cut(s)	126
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 171
Bse8I	GATNNNNATC	1 cut(s)	74
BseAI	TCCGGA	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	222
BseJI	GATNNNNATC	1 cut(s)	74
BseLI	CCNNNNNNNGG	2 cut(s)	168, 171
BseMII	CTCAG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	131
BshNI	GGYRCC	1 cut(s)	91
BsiSI	CCGG	2 cut(s)	104, 127
BslI	CCNNNNNNNGG	2 cut(s)	168, 171
BsmAI	GTCTC	1 cut(s)	258
BsmBI	CGTCTC	1 cut(s)	258
Bsp13I	TCCGGA	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	52
Bsp1720I	GCTNAGC	1 cut(s)	183
BspACI	CCGC	2 cut(s)	162, 179
BspCNI	CTCAG	1 cut(s)	196
BspEI	TCCGGA	1 cut(s)	126
BspLI	GGNNCC	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	1 cut(s)	52
BssNI	GRCGYC	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	96
BstACI	GRCGYC	1 cut(s)	159
BstC8I	GCNNGC	2 cut(s)	101, 149
BstDEI	CTNAG	1 cut(s)	183
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	1 cut(s)	52
BstNSI	RCATGY	2 cut(s)	16, 151
BstV1I	GCAGC	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	126
BtrI	CACGTC	1 cut(s)	295
Cac8I	GCNNGC	2 cut(s)	101, 149
Cfr13I	GGNCC	1 cut(s)	57
CseI	GACGC	2 cut(s)	102, 167
CviAII	CATG	2 cut(s)	13, 148
CviJI	RGCY	4 cut(s)	7, 132, 182, 187
CviKI_1	RGCY	4 cut(s)	7, 132, 182, 187
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	57
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	2 cut(s)	16, 151
FaiI	YATR	4 cut(s)	10, 14, 68, 149
FatI	CATG	2 cut(s)	12, 147
Fnu4HI	GCNGC	3 cut(s)	145, 162, 180
Fsp4HI	GCNGC	3 cut(s)	145, 162, 180
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	3 cut(s)	145, 162, 180
HapII	CCGG	2 cut(s)	104, 127
HgaI	GACGC	2 cut(s)	102, 167
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	2 cut(s)	16, 151
HpaII	CCGG	2 cut(s)	104, 127
HphI	GGTGA	2 cut(s)	256, 293
Hpy166II	GTNNAC	2 cut(s)	174, 247
Hpy188I	TCNGA	4 cut(s)	45, 57, 118, 223
Hpy188III	TCNNGA	2 cut(s)	127, 190
Hpy8I	GTNNAC	2 cut(s)	174, 247
Hpy99I	CGWCG	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	96
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	4 cut(s)	147, 151, 210, 231
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	1 cut(s)	294
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	2 cut(s)	16, 151
Kpn2I	TCCGGA	1 cut(s)	126
Kzo9I	GATC	1 cut(s)	52
LmnI	GCTCC	2 cut(s)	4, 129
LpnPI	CCDG	2 cut(s)	117, 140
Lsp1109I	GCAGC	1 cut(s)	131
MaeI	CTAG	1 cut(s)	237
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	2 cut(s)	17, 290
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	5 cut(s)	70, 82, 100, 162, 217
MroI	TCCGGA	1 cut(s)	126
MseI	TTAA	1 cut(s)	36
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	2 cut(s)	104, 127
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	2 cut(s)	16, 151
NlaIV	GGNNCC	1 cut(s)	93
NmuCI	GTSAC	2 cut(s)	17, 290
NspI	RCATGY	2 cut(s)	16, 151
PaeI	GCATGC	1 cut(s)	151
PciI	ACATGT	1 cut(s)	12
PflMI	CCANNNNNTGG	1 cut(s)	171
PkrI	GCNGC	3 cut(s)	146, 163, 181
PscI	ACATGT	1 cut(s)	12
PspN4I	GGNNCC	1 cut(s)	93
PspPI	GGNCC	1 cut(s)	57
SaqAI	TTAA	1 cut(s)	36
SatI	GCNGC	3 cut(s)	145, 162, 180
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	1 cut(s)	57
SetI	ASST	9 cut(s)	9, 43, 62, 134, 173, 189, 216, 238, 297
SinI	GGWCC	1 cut(s)	57
SphI	GCATGC	1 cut(s)	151
SsiI	CCGC	2 cut(s)	162, 179
SspMI	CTAG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	96
TaiI	ACGT	1 cut(s)	297
TauI	GCSGC	2 cut(s)	164, 182
Tru1I	TTAA	1 cut(s)	36
Tru9I	TTAA	1 cut(s)	36
TseFI	GTSAC	2 cut(s)	17, 290
TseI	GCWGC	1 cut(s)	144
Tsp45I	GTSAC	2 cut(s)	17, 290
Van91I	CCANNNNNTGG	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	57
XceI	RCATGY	2 cut(s)	16, 151
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.