Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001823

Physical Location & Seq

Genomic Coordinates Forward (+)

52605164 .. 52605490

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00258300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGAACTCTACACGGGTTACTTCCCCTTGCTCCCCAAGGGTCAGAGACCGGACTGGGCATCCCTTATGTGCGCTATCTGTTTCGGAGAGGTGCCGTGCTTGCCGGAGGGTGCGTCGGAAGACTTTCGGAGCTTTCTTGAGTGCTGCATGCACAAGGAGGCCTCCAAGAGGTGGACAGCGGCTCAACTTTTGACCCACCCGTTCGTCTGCAAGGCTCCATCCGAGGAATGCAAGCCAAACTTGTTCGACAAGAAAAGAAAACGTGATGATGATGGCGTTGAGCGAAGTGAGAGATCTCAAAAATCAATCAAGGTTGAAGTATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000160 GO:0000165 GO:0000187 GO:0001101 GO:0001932 GO:0001934 GO:0002229 GO:0002239 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004708 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006464 GO:0006468 GO:0006725 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0007568 GO:0008047 GO:0008150 GO:0008152 GO:0009058 GO:0009403 GO:0009404 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009627 GO:0009628 GO:0009651 GO:0009692 GO:0009693 GO:0009700 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009755 GO:0009791 GO:0009814 GO:0009838 GO:0009862 GO:0009863 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009908 GO:0009914 GO:0009926 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010120 GO:0010150 GO:0010227 GO:0010229 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0010646 GO:0010647 GO:0010817 GO:0014070 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018130 GO:0019207 GO:0019209 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019538 GO:0019748 GO:0019887 GO:0022414 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030234 GO:0030295 GO:0031098 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033674 GO:0034641 GO:0035556 GO:0035690 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0042430 GO:0042435 GO:0042445 GO:0042446 GO:0042493 GO:0042742 GO:0043085 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043449 GO:0043450 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044272 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0045087 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0046217 GO:0046483 GO:0046677 GO:0046777 GO:0048366 GO:0048367 GO:0048437 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0051726 GO:0052314 GO:0052315 GO:0052317 GO:0060255 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071369 GO:0071407 GO:0071446 GO:0071495 GO:0071704 GO:0071900 GO:0071902 GO:0080090 GO:0090567 GO:0090693 GO:0098542 GO:0098772 GO:0099402 GO:0140096 GO:1900673 GO:1900674 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

108

Amino Acids

12.38

Weight (kDa)

6.71

Isoelectric Point (pI)

73.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001823)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18350 AT1G73500 AT3G06230
fragaria_vesca	FvH4_5g02450 FvH4_5g02452 FvH4_5g02470 FvH4_5g17690
malus_domestica	MD06G1232600.v1.1 MD13G1223400.v1.1 MD14G1239400.v1.1 MD16G1227900.v1.1 MD16G1228300.v1.1
prunus_persica	Prupe.1G058300_v2.0.a1 Prupe.1G082800_v2.0.a1 Prupe.1G088400_v2.0.a1 Prupe.1G191900_v2.0.a1 Prupe.5G236900_v2.0.a1
pyrus_communis	pycom13g19740
rosa_chinensis	RchiOBHm_Chr5g0040641 RchiOBHm_Chr7g0177961 RchiOBHm_Chr7g0197661
rosa_laevigata	RLG00000003920 RLG00000003933 RLG00000005487 RLG00000009687
rosa_multiflora	Rmu_sc0002154.1_g000010 Rmu_sc0003916.1_g000020 Rmu_sc0006732.1_g000005
rosa_roxburghii	Rroxscaffold_3G00258300 Rroxscaffold_3G00258400 Rroxscaffold_5G00339620 Rroxscaffold_5G00339630
rosa_rugosa	Rorug06G0411800 Rorug07G0040300 Rorug07G0042200
rosa_samantha	Rh4CG058000 Rh5BG277200 Rh7AG010700 Rh7BG010700 Rh7BG168700 Rh7CG011100 Rh7CG175000 Rh7DG010800 Rh7DG168300
rosa_wichuraiana	Rw5G025540 Rw7G000900 Rw7G014500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	91
AccB7I	CCANNNNNTGG	1 cut(s)	171
AciI	CCGC	1 cut(s)	179
AfiI	CCNNNNNNNGG	2 cut(s)	168, 171
AgsI	TTSAA	1 cut(s)	317
AluBI	AGCT	1 cut(s)	132
AluI	AGCT	1 cut(s)	132
Alw26I	GTCTC	1 cut(s)	40
AoxI	GGCC	1 cut(s)	159
ApeKI	GCWGC	1 cut(s)	144
Asp700I	GAANNNNTTC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	74
BanI	GGYRCC	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	126
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	2 cut(s)	226, 266
BceAI	ACGGC	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	40
BglII	AGATCT	1 cut(s)	293
BisI	GCNGC	2 cut(s)	145, 180
BlsI	GCNGC	2 cut(s)	146, 181
BmiI	GGNNCC	2 cut(s)	93, 216
BmrI	ACTGGG	1 cut(s)	64
BmsI	GCATC	1 cut(s)	68
BmuI	ACTGGG	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	126
BpuEI	CTTGAG	1 cut(s)	158
BsaI	GGTCTC	1 cut(s)	40
BsaJI	CCNNGG	2 cut(s)	36, 222
BsaWI	WCCGGW	1 cut(s)	49
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 171
Bse1I	ACTGG	1 cut(s)	59
BseDI	CCNNGG	2 cut(s)	36, 222
BseGI	GGATG	2 cut(s)	59, 218
BseLI	CCNNNNNNNGG	2 cut(s)	168, 171
BseNI	ACTGG	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	131
BshFI	GGCC	1 cut(s)	161
BshNI	GGYRCC	1 cut(s)	91
BsiSI	CCGG	2 cut(s)	50, 104
BslI	CCNNNNNNNGG	2 cut(s)	168, 171
BsmAI	GTCTC	1 cut(s)	40
BsmI	GAATGC	1 cut(s)	233
BsnI	GGCC	1 cut(s)	161
Bso31I	GGTCTC	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	293
BspACI	CCGC	1 cut(s)	179
BspANI	GGCC	1 cut(s)	161
BspLI	GGNNCC	2 cut(s)	93, 216
BspT107I	GGYRCC	1 cut(s)	91
BspTNI	GGTCTC	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	36, 222
BssMI	GATC	1 cut(s)	293
BssT1I	CCWWGG	1 cut(s)	36
BstC8I	GCNNGC	3 cut(s)	101, 149, 233
BstENI	CCTNNNNNAGG	1 cut(s)	166
BstF5I	GGATG	2 cut(s)	59, 218
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	1 cut(s)	296
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	293
BstMWI	GCNNNNNNNGC	1 cut(s)	100
BstNSI	RCATGY	1 cut(s)	151
BstV1I	GCAGC	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	161
BtsCI	GGATG	2 cut(s)	59, 218
Cac8I	GCNNGC	3 cut(s)	101, 149, 233
CfoI	GCGC	1 cut(s)	74
CseI	GACGC	1 cut(s)	102
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	5 cut(s)	132, 161, 182, 215, 235
CviKI_1	RGCY	5 cut(s)	132, 161, 182, 215, 235
DpnI	GATC	1 cut(s)	295
DpnII	GATC	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	36
Eco147I	AGGCCT	1 cut(s)	161
Eco31I	GGTCTC	1 cut(s)	40
EcoNI	CCTNNNNNAGG	1 cut(s)	166
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	1 cut(s)	151
FaiI	YATR	3 cut(s)	68, 149, 322
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FatI	CATG	1 cut(s)	147
Fnu4HI	GCNGC	2 cut(s)	145, 180
FokI	GGATG	2 cut(s)	46, 205
Fsp4HI	GCNGC	2 cut(s)	145, 180
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	2 cut(s)	145, 180
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	2 cut(s)	50, 104
HgaI	GACGC	1 cut(s)	102
HhaI	GCGC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	151
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HpaII	CCGG	2 cut(s)	50, 104
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	5 cut(s)	45, 86, 118, 129, 223
Hpy188III	TCNNGA	1 cut(s)	137
Hpy8I	GTNNAC	1 cut(s)	174
Hpy99I	CGWCG	1 cut(s)	118
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	4 cut(s)	147, 151, 210, 231
HpyF10VI	GCNNNNNNNGC	1 cut(s)	100
HpySE526I	ACGT	1 cut(s)	262
Hsp92II	CATG	1 cut(s)	151
HspAI	GCGC	1 cut(s)	72
Kzo9I	GATC	1 cut(s)	293
LmnI	GCTCC	3 cut(s)	36, 129, 220
LpnPI	CCDG	3 cut(s)	40, 63, 117
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	1 cut(s)	68
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	1 cut(s)	295
MboI	GATC	1 cut(s)	293
MboII	GAAGA	1 cut(s)	131
MflI	RGATCY	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	6 cut(s)	82, 100, 151, 162, 172, 217
MroXI	GAANNNNTTC	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	2 cut(s)	50, 104
Mva1269I	GAATGC	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	100
NdeII	GATC	1 cut(s)	293
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	2 cut(s)	93, 216
NspI	RCATGY	1 cut(s)	151
PaeI	GCATGC	1 cut(s)	151
PceI	AGGCCT	1 cut(s)	161
PctI	GAATGC	1 cut(s)	233
PdmI	GAANNNNTTC	1 cut(s)	123
PflMI	CCANNNNNTGG	1 cut(s)	171
PkrI	GCNGC	2 cut(s)	146, 181
PspN4I	GGNNCC	2 cut(s)	93, 216
PsuI	RGATCY	1 cut(s)	293
SatI	GCNGC	2 cut(s)	145, 180
Sau3AI	GATC	1 cut(s)	293
SetI	ASST	5 cut(s)	93, 134, 173, 265, 315
SfaNI	GCATC	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SphI	GCATGC	1 cut(s)	151
SseBI	AGGCCT	1 cut(s)	161
SsiI	CCGC	1 cut(s)	179
StuI	AGGCCT	1 cut(s)	161
StyI	CCWWGG	1 cut(s)	36
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	1 cut(s)	246
TauI	GCSGC	1 cut(s)	182
TseI	GCWGC	1 cut(s)	144
Van91I	CCANNNNNTGG	1 cut(s)	171
XagI	CCTNNNNNAGG	1 cut(s)	166
XceI	RCATGY	1 cut(s)	151
XmnI	GAANNNNTTC	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.