Rorug07G0042200

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001823
Physical Location & Seq
Forward (+)
2965202 .. 2968899
3698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0042200.1

Sequence Viewer

Length: 591 bp
ATGGGGGGAAGAGGATTGTTTGATCTTGAAAACCACTTTGCCTTCTATGGCGCATATCACAGCAACCCAGTTAACATTTTCATCCACACTCTGTTTGTGTGGCCAATTCTGTTCACCTCTCTTGTTCTTCTCTACTTCACACCTTCCCTGCTGAATTTCCCAGCTGGGGTTTATCATGGGTTTTTGTTTAATTTTGGGTTTGTTTTCACTGTGATCTATGCTTTGTATTATGTTGGATTGGATAAGAAAGCTGGGTCCTTGGCTGCTTTGCTCTGTGTTCTCTGCTGGGTTGGAGCCAGTGTTCTTGCTAGTCGCCTTGGGTTTTCTTTGGCATGGAAGGTTGTGTTGGCAGGTCAGTTGTTCTGTTGGACTGGACAGTTCATAGGCCATGGGGTGTTTGAGAAACGAGCACCAGCTCTTCTGGACAACCTTGTCCAAGCATTTCTAATGGCCCCTTTCTTTGTGTTACTTGAGGTCCTTCAAACGGCCTTTGGTTACGAACCTTATCCAGGGTTTCATGCAAATGTTAAAGAAAAGATAGAGGCTAATATCAAAGAGTGGCAAGAAGAGAAACAAAAGAAACAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

196

Amino Acids

22.09

Weight (kDa)

7.74

Isoelectric Point (pI)

35.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpo1-like PF06127 8 - 161 1.1e-23 2-hydroxy-palmitic acid dioxygenase Mpo1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 431
Acc36I ACCTGC 1 cut(s) 341
AcoI YGGCCR 1 cut(s) 101
AcsI RAATTY 1 cut(s) 154
AfiI CCNNNNNNNGG 3 cut(s) 166, 484, 509
AgsI TTSAA 2 cut(s) 29, 482
AjnI CCWGG 1 cut(s) 508
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
AloI GAACNNNNNNTCC 2 cut(s) 285, 317
AluBI AGCT 3 cut(s) 164, 251, 416
AluI AGCT 3 cut(s) 164, 251, 416
Alw21I GWGCWC 1 cut(s) 412
AoxI GGCC 4 cut(s) 101, 385, 450, 486
ApeKI GCWGC 1 cut(s) 263
ApoI RAATTY 1 cut(s) 154
AspLEI GCGC 1 cut(s) 53
AspS9I GGNCC 3 cut(s) 255, 451, 475
AsuHPI GGTGA 1 cut(s) 106
AvaII GGWCC 2 cut(s) 255, 475
BalI TGGCCA 1 cut(s) 103
Bbv12I GWGCWC 1 cut(s) 412
BbvI GCAGC 1 cut(s) 250
BceAI ACGGC 1 cut(s) 501
BciT130I CCWGG 1 cut(s) 510
BfaI CTAG 1 cut(s) 309
BfuAI ACCTGC 1 cut(s) 341
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme1390I CCNGG 1 cut(s) 510
Bme18I GGWCC 2 cut(s) 255, 475
BmgT120I GGNCC 3 cut(s) 255, 451, 475
BmiI GGNNCC 3 cut(s) 256, 295, 453
BmrFI CCNGG 1 cut(s) 510
BmrI ACTGGG 1 cut(s) 62
BmuI ACTGGG 1 cut(s) 62
BpuEI CTTGAG 1 cut(s) 491
BsaJI CCNNGG 4 cut(s) 258, 316, 388, 509
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bsc4I CCNNNNNNNGG 3 cut(s) 166, 484, 509
Bse1I ACTGG 3 cut(s) 68, 297, 376
BseBI CCWGG 1 cut(s) 510
BseDI CCNNGG 4 cut(s) 258, 316, 388, 509
BseGI GGATG 1 cut(s) 81
BseLI CCNNNNNNNGG 3 cut(s) 166, 484, 509
BseNI ACTGG 3 cut(s) 68, 297, 376
BseXI GCAGC 1 cut(s) 250
BseYI CCCAGC 4 cut(s) 160, 164, 251, 285
BshFI GGCC 4 cut(s) 103, 387, 452, 488
BsiHKAI GWGCWC 1 cut(s) 412
BslI CCNNNNNNNGG 3 cut(s) 166, 484, 509
BsnI GGCC 4 cut(s) 103, 387, 452, 488
Bsp1286I GDGCHC 1 cut(s) 412
Bsp143I GATC 2 cut(s) 22, 213
Bsp19I CCATGG 1 cut(s) 388
BspANI GGCC 4 cut(s) 103, 387, 452, 488
BspLI GGNNCC 3 cut(s) 256, 295, 453
BspMI ACCTGC 1 cut(s) 341
BspQI GCTCTTC 1 cut(s) 423
BsrI ACTGG 3 cut(s) 68, 297, 376
BssECI CCNNGG 4 cut(s) 258, 316, 388, 509
BssMI GATC 2 cut(s) 22, 213
BssT1I CCWWGG 3 cut(s) 258, 316, 388
Bst2UI CCWGG 1 cut(s) 510
Bst4CI ACNGT 2 cut(s) 211, 378
Bst6I CTCTTC 3 cut(s) 4, 423, 561
BstDEI CTNAG 1 cut(s) 588
BstDSI CCRYGG 1 cut(s) 388
BstENI CCTNNNNNAGG 1 cut(s) 507
BstF5I GGATG 1 cut(s) 81
BstHHI GCGC 1 cut(s) 53
BstKTI GATC 2 cut(s) 25, 216
BstMBI GATC 2 cut(s) 22, 213
BstNI CCWGG 1 cut(s) 510
BstSCI CCNGG 1 cut(s) 508
BstV1I GCAGC 1 cut(s) 250
BsuRI GGCC 4 cut(s) 103, 387, 452, 488
BtgI CCRYGG 1 cut(s) 388
BtsCI GGATG 1 cut(s) 81
BtsIMutI CAGTG 2 cut(s) 207, 304
BveI ACCTGC 1 cut(s) 341
CfoI GCGC 1 cut(s) 53
Cfr13I GGNCC 3 cut(s) 255, 451, 475
CviAII CATG 4 cut(s) 176, 333, 389, 518
DdeI CTNAG 1 cut(s) 588
DpnI GATC 2 cut(s) 24, 215
DpnII GATC 2 cut(s) 22, 213
DrdI GACNNNNNNGTC 1 cut(s) 431
DseDI GACNNNNNNGTC 1 cut(s) 431
EaeI YGGCCR 1 cut(s) 101
Eam1104I CTCTTC 3 cut(s) 4, 423, 561
EarI CTCTTC 3 cut(s) 4, 423, 561
Eco130I CCWWGG 3 cut(s) 258, 316, 388
Eco47I GGWCC 2 cut(s) 255, 475
EcoNI CCTNNNNNAGG 1 cut(s) 507
EcoO109I RGGNCCY 2 cut(s) 255, 475
EcoRII CCWGG 1 cut(s) 508
EcoT14I CCWWGG 3 cut(s) 258, 316, 388
ErhI CCWWGG 3 cut(s) 258, 316, 388
FaeI CATG 4 cut(s) 179, 336, 392, 521
FaiI YATR 9 cut(s) 48, 55, 177, 219, 231, 334, 383, 390, 519
FatI CATG 4 cut(s) 175, 332, 388, 517
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 264
FspBI CTAG 1 cut(s) 309
GlaI GCGC 1 cut(s) 52
GluI GCNGC 1 cut(s) 264
GsaI CCCAGC 4 cut(s) 164, 168, 255, 289
HaeIII GGCC 4 cut(s) 103, 387, 452, 488
HhaI GCGC 1 cut(s) 53
Hin1II CATG 4 cut(s) 179, 336, 392, 521
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
HpaI GTTAAC 1 cut(s) 73
HphI GGTGA 1 cut(s) 106
Hpy166II GTNNAC 2 cut(s) 73, 114
Hpy188III TCNNGA 2 cut(s) 26, 422
Hpy8I GTNNAC 2 cut(s) 73, 114
HpyAV CCTTC 4 cut(s) 52, 153, 331, 488
HpyCH4III ACNGT 2 cut(s) 211, 378
HpyCH4V TGCA 1 cut(s) 521
HpyF3I CTNAG 1 cut(s) 588
Hsp92II CATG 4 cut(s) 179, 336, 392, 521
HspAI GCGC 1 cut(s) 51
KspAI GTTAAC 1 cut(s) 73
Kzo9I GATC 2 cut(s) 22, 213
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 1 cut(s) 293
Lsp1109I GCAGC 1 cut(s) 250
MaeI CTAG 1 cut(s) 309
MaeIII GTNAC 2 cut(s) 465, 494
MalI GATC 2 cut(s) 24, 215
MboI GATC 2 cut(s) 22, 213
MboII GAAGA 4 cut(s) 21, 119, 410, 578
MhlI GDGCHC 1 cut(s) 412
MlsI TGGCCA 1 cut(s) 103
MluCI AATT 3 cut(s) 105, 154, 190
MluNI TGGCCA 1 cut(s) 103
MmeI TCCRAC 3 cut(s) 214, 271, 347
MnlI CCTC 4 cut(s) 5, 127, 466, 535
Mox20I TGGCCA 1 cut(s) 103
MscI TGGCCA 1 cut(s) 103
MseI TTAA 3 cut(s) 72, 189, 528
MslI CAYNNNNRTG 1 cut(s) 522
Msp20I TGGCCA 1 cut(s) 103
MspA1I CMGCKG 1 cut(s) 164
MspR9I CCNGG 1 cut(s) 510
MvaI CCWGG 1 cut(s) 510
NcoI CCATGG 1 cut(s) 388
NdeII GATC 2 cut(s) 22, 213
NlaIII CATG 4 cut(s) 179, 336, 392, 521
NlaIV GGNNCC 3 cut(s) 256, 295, 453
PciSI GCTCTTC 1 cut(s) 423
PkrI GCNGC 1 cut(s) 265
PpuMI RGGWCCY 2 cut(s) 255, 475
Psp5II RGGWCCY 2 cut(s) 255, 475
Psp6I CCWGG 1 cut(s) 508
PspFI CCCAGC 4 cut(s) 160, 164, 251, 285
PspGI CCWGG 1 cut(s) 508
PspN4I GGNNCC 3 cut(s) 256, 295, 453
PspPI GGNCC 3 cut(s) 255, 451, 475
PspPPI RGGWCCY 2 cut(s) 255, 475
PvuII CAGCTG 1 cut(s) 164
RseI CAYNNNNRTG 1 cut(s) 522
SapI GCTCTTC 1 cut(s) 423
SaqAI TTAA 3 cut(s) 72, 189, 528
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 2 cut(s) 22, 213
Sau96I GGNCC 3 cut(s) 255, 451, 475
ScrFI CCNGG 1 cut(s) 510
SduI GDGCHC 1 cut(s) 412
SinI GGWCC 2 cut(s) 255, 475
SmiMI CAYNNNNRTG 1 cut(s) 522
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
Sse9I AATT 3 cut(s) 105, 154, 190
SspMI CTAG 1 cut(s) 309
StyD4I CCNGG 1 cut(s) 508
StyI CCWWGG 3 cut(s) 258, 316, 388
TaaI ACNGT 2 cut(s) 211, 378
TasI AATT 3 cut(s) 105, 154, 190
Tru1I TTAA 3 cut(s) 72, 189, 528
Tru9I TTAA 3 cut(s) 72, 189, 528
TscAI CASTG 2 cut(s) 214, 304
TseI GCWGC 1 cut(s) 263
TspDTI ATGAA 3 cut(s) 70, 370, 506
TspRI CASTG 2 cut(s) 214, 304
VpaK11BI GGWCC 2 cut(s) 255, 475
XagI CCTNNNNNAGG 1 cut(s) 507
XapI RAATTY 1 cut(s) 154
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.