FvH4_5g03781

ABC transporter C family member 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0002044
Physical Location & Seq
Reverse (-)
2227283 .. 2233121
5839 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g03781.t1

Sequence Viewer

Length: 4542 bp
ATGTACCCGACTATCAGAGAAGTTTTCTCCGAATCTGTGAAAAGACTTTACAGATTACTGGGGAACAGCATGGGGGAGGGTTTCTGGACCTTATTCTGCACTGGTTCCGAGTGTTCAAATGAGTCCGGAAATGAATGCAGTTCTGGCATTCTAGCCATTATCAATCCAAATTCATGTATCAACAATGTTGTGGTCATTGCAGTTGATATTTTGCTCCTATTCATCTTGTTATGTTTCCTTATGTATAGAATAGCGTCAAAGAAGATTATAGCACCATCACAACCTTACACCTTCTCTACAGTATCAATTGTCTCAGTCATTTTCAATGCTGGTTTGGCTTTGGCTTACTTGGGACTGGGGATATGGATAATCATTGAGAAAGTAGATACATATCACACGGTTTTACCTCTACATGGATGGCTAGTATATTTTTTTCAAGGGTTTACATGGTTGGGCCTGGGTTTTACCATAAACCTCTCGAAACCAGACCTTCCACATTATGCAATAATGAAATTCTTTTCAATTTTTGGTTTCTTGATTGCATTTCTTCTCTGTGGTTCATCAGTTTGGGAATTTATTATGGATGAGACCTTATCAGTTCTGATTGTTTTGAACATTCTTTGTTTCCCTGGATCAGTTCTGTTGCTTTTTAGTGCATTTGAAGGAAGCAATAATGCACAGGGTGATCTGGAAGTCCATGATGGTGATGCATGCTACACACCTTTGCCTGGTGCAGAACAGGATATCACAGGTGATGAAATCAGTTCAGATGACAATGTAACTCATTTTGCAAAGGCTGGATTGTTTAGTAAAATGACATTTTGGTGGTTGAATCCTTTGATGAAGAAAGGTAAGGAAAAGATTCTTGAGAATGAAGATATTCCACAATTGCGAGAAGCTGATCGAGCAAGAACGTTGCACTCAGTATTTAAGGTGCAATTGCAGAAAAGAAAGGAAAGACATCCATCCAGTAGTGACCCTTCTGTTCTGACCATAATTTTTTTCTGCCAGTGGAAAGCAATTTTGGTTTCAGGGTTCTTTGCACTCCTCAAGATTCTCGCAATGACTGTCTCCCCGCTGTTTCTCATAGCTTTCATCAAGGTTGTCGATGCCGATGCAGCTTCTAGATATGATGTTTATGCACTGACTGCTGGTCTGTTCTTTGTGAAAATCGTGGAGTCACTGTCGGAGAGGCAATGGTTCTTCAGGACTAGACTTATTGGACTCCAGGTAAGATCACTGATATCTGCAGCAGTTTATCAGAAGCAACTAAGACTCTCAAATGCTGCCAAGATGACTCATTCTCCTGGTGATATAGTGAACTATGTAACAGTGGATGCTTACAGAATCGGTGAATTTCCATTCTGGTTTCATCAGATATGGTCCACAAACCTTCAATTGTTTCTCTCATTACTTATTATTTACTTCGCTGTTGGGGCTGCAACTCTTGCAGCTTTAACTGTTCTCATATTGACTGTGGTGGTAAGCTCTCCATTGGCGAAGTTGCAGCACGAGTATCAAACAAAGTTCATGACTGCACAAAACAAGAGGTTGAGGGCCATTACAGAAGCACTATCAAATATGAAAATCTTGAAGCTGTATTCTTGGGAGACAAATTTCAAGAAGGTCATAGAAGGTTTTAGAGCAGAAGAGCTTAACTGGATAGCTAAAGTACTGTCACAAAAGGGGTATTGTAATGCACTATTCTGGACAGCACCTATTTTGGCAGCAGCTGTAACCTTTTGGACATGTTACTTCCTCGGATTTACGCTCACACCTAGTAATGTTTTCACATTTCTAGCAACTTTGCGTATTCTTCAGGAGCCAATTAGGCTAATCCCTGACGTCTTTGGAGCATTTATTGAAGCCAAGGTTTCATTTTCTCGGATTGTTAAGTTCCTTGATGCACCAGAGTTGGAGAACAGACATACCAGGAAAGAGAGCGGTGGCAAGGAGCTTGAGCATTCCATATTCATTATAGCCCCTGAAATTTCATGGGATACTAGTGCTACAAAGGCCACATTGAGGGACATCAATTTGGTGGTAAAACCAGGAGAAAAAGTTGCTATTTGTGGAGAGGTTGGCTCAGGAAAATCAACCCTTTTAGCTGCAATTCTTGGAGAGGTTCCACGAATCAATGGTGTTGTTCAAGTATATGGCACAATAGCATATGTCTCTCAATCTGCATGGATCCAAACAGGAACTATACAAGATAATATTCTGTTTGGGTCTCCCATGGATCATGTAAGATATCGAGAAATACTTCAGCAGTGTTCTCTCATAAAGGACCTGGAGATTCTTCCATTCTGCGATCTCACTCAAATAGGAGAAAGAGGGGTCAATTTAAGTGGTGGCCAGAAACAGCGCATTCAACTTGCACGAGCATTGTATCAAAATGCTGAAGTCTACTTATTGGATGATCCTTTCAGTGCTGTTGATGCCCATACTGCCACAAGCCTTTTCAATGAATATGTCATGGGAGCTCTGGCAGAGAAGACGGTGTTGCTTGTTACACACCAAGTCGACTTCCTTCCAGCATTTAATTCCATATTGCTGATGTCTTCGGGCAAAATTTCAAGAGCAGCTCCTTACAACGAGTTACTGGCTTCTTGTCAAGAGTTCCAAGACCTTGTTAATGCACACAATGACACTGCTGGTTCTGAGAGGCAAGTTGAATATGCTTCTACTAGGAAAAACAAATTGGCTGCAAAGGAGATTGAGAAAGAAAGAACTGAGGTAGAGAGAAAAGAATCTTCAGGAGATCAATTGATCAAGAAAGAAGAGAGAGAAACAGGAGACACAGGGTTCAAGCCATACATTCAGTATTTGAAGCATAGCAATGGCTTTATGCACTTCTCTTTATCAGTTCTTTTCTTGTTTATGTTCATTGTTGGGCAATTAATTCAGAATTATTGGTTGGCTTTGAATCTTCAGGATTATAGCGTGTCCAGAGTCAAACTATTCACAGTTTATTCTGTGATCTTCTGTATTATGTCGATCTTTTTGCTTTTTCGATCTTTTATGATAGTCGATTTAGGATATGGAGCTTCAGAATCTATTTTCTCTGCGCTACTGAACTCTCTTTTCCGTGCACCAATGCTGTTTTATGATTCAACACCTGTGGGGAGGATACTTAGTCGGGTATCTACTGATATGAATATCATCGACCTCGAAGTTGGTTTAAAGTTGGCATTTGCTGCTGGGGCGATTGTTAGCGCTTACAGCATATTTTTGGTATTGGTTGTTCTTGCTTGGCCACTCATGTTTCTGATTGCACCTACAATATATCTTACTTATCTGTTTCAGAATTACTACTTTGCTTCAGCAAAAGAGTTGATGCGAATGAATGGCACGACTAAGTCTGCAATTGCAAGCCAACTTTCTGAATCTATTGCTGGAGCCATGACAATCAGAGCTTTTGGACAGGAGAAACGACTCTACTCAATAAACTTGGATTTTGTTGATGCAAATTCTAGTGCTGACTTCAATAGTTTCTCAACAAATGAGTGGTTAACTGAACGTCTGGAATTTCTGTGTGCTATTGTTCTCTCAGCCTCAGCCATTGCCATTACTTGGATTGATGCTTCTTCCTCTGGTTTTATTGGGATGACACTATCATATGGTCTCTCGTTAAATGTATACCTTGTAACTTCTGTCCAACTTCAGTGCATGATAGGAAATTCAATTGTTTCCGTTGAAAGGGTAGAACAATACATGCATATTCCCAGTGAATCTGCGCAAGTAATAGAAGACAACCGACCTGCACACAATTGGCCTCTTGTTGGTAAAGTGGAAATATGCGACTTAAAGGTAAGATACAGGCCAAACTCTCCTTTGGTTCTTCGTGGGATAAATTGCATCATTGAAGGAGGCTCCAAAATTGGAATTGTTGGCCGGACTGGAAGTGGAAAGACAACTCTTATCAGCGTTTTGTTTCGTCTGGTAGAGCCTACGGAGGGAAAAGTCATTGTAGATGATTATGACATTTGTACCATTGGTATTCATGATTTAAGATCACGTTTGGGGATCATCCCACAAGAGCCAACCTTATTCAGTGGCTCTGTGAGATTCAACCTTGACCCCTTGTCAGAGCATACTGATCTTGAAATATGGGAGGTTCTTGAGAAATGCCAGTTGCGAGAAGCCATTCAAGAGAAAGAAGAGGGTCTAGATTCCTTTGTTGAGCAAGATGGAACAAACTGGAGCACAGGGCAGCGTCAACTATTTTGTTTGGGACGTGCTTTACTGAAGAAGAGCCGAATACTTGTGCTGGATGAAGCCACTGCATCAATGGACAATGCAACAGACTCCATTCTCCAGAAAACTATAAGAAAGGAATTTGCAGATAGCACTGTAATAACAGTGGCCCATAGGATACCAACCGTGATGGACTGCACTAAGGTTCTTGCTATAAGTGACGGGCTAGTAGTGGAGTATGATGAGCCAACGAAGCTGATAAACAACAAGGGGTCACTATTTGGGCAGCTTGTCAAGGAATACTGGTCTCGTTCTGCCAAAGCCGGCCTCCATTCAGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

1514

Amino Acids

169.25

Weight (kDa)

5.94

Isoelectric Point (pI)

33.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABCC10_N PF24358 26 - 224 2.3e-70 ABCC10 N-terminal domain
ABC_membrane PF00664 342 - 609 7.3e-27 ABC transporter transmembrane region
ABC_tran PF00005 675 - 809 1.9e-21 ABC transporter
ABC_membrane PF00664 954 - 1196 1e-23 ABC transporter transmembrane region
ABC_tran PF00005 1281 - 1429 1.2e-24 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1848
Acc16I TGCGCA 1 cut(s) 3738
Acc36I ACCTGC 1 cut(s) 3769
AccB7I CCANNNNNTGG 1 cut(s) 3573
AccBSI CCGCTC 1 cut(s) 1944
AccI GTMKAC 3 cut(s) 2406, 2523, 3639
AccIII TCCGGA 1 cut(s) 125
AciI CCGC 2 cut(s) 1076, 1944
AclI AACGTT 1 cut(s) 914
AclWI GGATC 6 cut(s) 640, 2185, 2198, 2247, 2414, 4034
AcoI YGGCCR 3 cut(s) 2353, 3254, 3892
AcyI GRCGYC 1 cut(s) 1845
AdeI CACNNNGTG 1 cut(s) 683
AfaI GTAC 3 cut(s) 5, 1674, 3991
AfeI AGCGCT 1 cut(s) 3217
AfiI CCNNNNNNNGG 7 cut(s) 413, 728, 2025, 3573, 3699, 3782, 3956
AflIII ACRYGT 1 cut(s) 1748
AhdI GACNNNNNGTC 2 cut(s) 1152, 4084
AhlI ACTAGT 1 cut(s) 2003
AjiI CACGTC 1 cut(s) 4238
AjnI CCWGG 8 cut(s) 456, 628, 727, 1227, 1306, 1931, 2050, 2289
AjuI GAANNNNNNNTTGG 6 cut(s) 1007, 1039, 2684, 2716, 2900, 2932
Alw21I GWGCWC 3 cut(s) 2485, 3094, 4208
Alw26I GTCTC 9 cut(s) 316, 581, 1075, 1604, 2179, 2235, 2790, 3629, 4509
Alw44I GTGCAC 1 cut(s) 3090
AlwI GGATC 6 cut(s) 640, 2185, 2198, 2247, 2414, 4034
AlwNI CAGNNNCTG 1 cut(s) 1733
Aor13HI TCCGGA 1 cut(s) 125
Aor51HI AGCGCT 1 cut(s) 3217
ApaLI GTGCAC 1 cut(s) 3090
AseI ATTAAT 1 cut(s) 2900
Asp700I GAANNNNTTC 4 cut(s) 861, 879, 2262, 4146
AspLEI GCGC 4 cut(s) 2367, 3070, 3218, 3739
AspS9I GGNCC 6 cut(s) 87, 454, 1383, 1557, 2287, 4366
AsuHPI GGTGA 5 cut(s) 695, 716, 764, 1322, 1364
AvaII GGWCC 3 cut(s) 87, 1383, 2287
BaeGI GKGCMC 1 cut(s) 3094
BaeI ACNNNNGTAYC 2 cut(s) 3973, 4006
BalI TGGCCA 2 cut(s) 2355, 3256
BamHI GGATCC 1 cut(s) 2190
BanII GRGCYC 1 cut(s) 2485
BarI GAAGNNNNNNTAC 2 cut(s) 964, 996
BauI CACGAG 2 cut(s) 1511, 2379
BbsI GAAGAC 3 cut(s) 2501, 2553, 3756
Bbv12I GWGCWC 3 cut(s) 2485, 3094, 4208
BbvCI CCTCAGC 1 cut(s) 3556
BccI CCATC 6 cut(s) 283, 411, 695, 973, 4184, 4381
BcgI CGANNNNNNTGC 4 cut(s) 1097, 1131, 2986, 3020
BciT130I CCWGG 8 cut(s) 458, 630, 729, 1229, 1308, 1933, 2052, 2291
BciVI GTATCC 3 cut(s) 1993, 3123, 4368
BclI TGATCA 1 cut(s) 2769
BcoDI GTCTC 9 cut(s) 316, 581, 1075, 1604, 2179, 2235, 2790, 3629, 4509
BcuI ACTAGT 1 cut(s) 2003
BfmI CTRYAG 2 cut(s) 297, 1248
BfoI RGCGCY 1 cut(s) 3219
BfuAI ACCTGC 1 cut(s) 3769
BfuI GTATCC 3 cut(s) 1993, 3123, 4368
BglI GCCNNNNNGGC 1 cut(s) 1831
BmcAI AGTACT 1 cut(s) 1674
Bme1390I CCNGG 8 cut(s) 458, 630, 729, 1229, 1308, 1933, 2052, 2291
Bme18I GGWCC 3 cut(s) 87, 1383, 2287
BmeRI GACNNNNNGTC 2 cut(s) 1152, 4084
BmgBI CACGTC 1 cut(s) 4238
BmgT120I GGNCC 6 cut(s) 87, 454, 1383, 1557, 2287, 4366
BmiI GGNNCC 6 cut(s) 106, 1824, 2127, 2192, 3400, 3874
BmrFI CCNGG 8 cut(s) 458, 630, 729, 1229, 1308, 1933, 2052, 2291
BmrI ACTGGG 3 cut(s) 68, 365, 3720
BmuI ACTGGG 3 cut(s) 68, 365, 3720
BpiI GAAGAC 3 cut(s) 2501, 2553, 3756
BplI GAGNNNNNCTC 2 cut(s) 2069, 2101
BpmI CTGGAG 5 cut(s) 1211, 2312, 3417, 4222, 4301
Bpu10I CCTNAGC 2 cut(s) 2086, 3556
BpuEI CTTGAG 4 cut(s) 887, 1034, 1979, 4142
BsaBI GATNNNNATC 1 cut(s) 390
BsaHI GRCGYC 1 cut(s) 1845
BsaI GGTCTC 4 cut(s) 581, 2235, 3629, 4509
BsaJI CCNNGG 5 cut(s) 457, 628, 1759, 1869, 2235
BsaWI WCCGGW 1 cut(s) 125
BsaXI ACNNNNNCTCC 6 cut(s) 1169, 1199, 1288, 1318, 2046, 2076
Bsc4I CCNNNNNNNGG 7 cut(s) 413, 728, 2025, 3573, 3699, 3782, 3956
Bse118I RCCGGY 1 cut(s) 4520
Bse3DI GCAATG 5 cut(s) 195, 1068, 1202, 2845, 3561
Bse8I GATNNNNATC 1 cut(s) 390
BseAI TCCGGA 1 cut(s) 125
BseBI CCWGG 8 cut(s) 458, 630, 729, 1229, 1308, 1933, 2052, 2291
BseDI CCNNGG 5 cut(s) 457, 628, 1759, 1869, 2235
BseGI GGATG 9 cut(s) 422, 589, 961, 965, 1342, 2422, 3612, 4029, 4279
BseJI GATNNNNATC 1 cut(s) 390
BseLI CCNNNNNNNGG 7 cut(s) 413, 728, 2025, 3573, 3699, 3782, 3956
BseMI GCAATG 5 cut(s) 195, 1068, 1202, 2845, 3561
BseMII CTCAG 7 cut(s) 327, 936, 2100, 2652, 2724, 3564, 3570
BseRI GAGGAG 1 cut(s) 1037
BseSI GKGCMC 1 cut(s) 3094
BseYI CCCAGC 1 cut(s) 3200
BsgI GTGCAG 5 cut(s) 82, 753, 1521, 3747, 4378
BsiHKAI GWGCWC 3 cut(s) 2485, 3094, 4208
BsiSI CCGG 3 cut(s) 126, 3895, 4521
BslFI GGGAC 3 cut(s) 366, 2042, 4248
BslI CCNNNNNNNGG 7 cut(s) 413, 728, 2025, 3573, 3699, 3782, 3956
BsmAI GTCTC 9 cut(s) 316, 581, 1075, 1604, 2179, 2235, 2790, 3629, 4509
BsmFI GGGAC 3 cut(s) 366, 2042, 4248
BsmI GAATGC 4 cut(s) 140, 147, 1963, 2367
Bso31I GGTCTC 4 cut(s) 581, 2235, 3629, 4509
Bsp1286I GDGCHC 3 cut(s) 2485, 3094, 4208
Bsp13I TCCGGA 1 cut(s) 125
Bsp19I CCATGG 1 cut(s) 2235
BspACI CCGC 2 cut(s) 1076, 1944
BspCNI CTCAG 7 cut(s) 326, 935, 2099, 2653, 2725, 3563, 3569
BspEI TCCGGA 1 cut(s) 125
BspHI TCATGA 2 cut(s) 1530, 4003
BspLI GGNNCC 6 cut(s) 106, 1824, 2127, 2192, 3400, 3874
BspMAI CTGCAG 1 cut(s) 1252
BspMI ACCTGC 1 cut(s) 3769
BspPI GGATC 6 cut(s) 640, 2185, 2198, 2247, 2414, 4034
BspQI GCTCTTC 2 cut(s) 1644, 4247
BspTNI GGTCTC 4 cut(s) 581, 2235, 3629, 4509
BsrBI CCGCTC 1 cut(s) 1944
BsrDI GCAATG 5 cut(s) 195, 1068, 1202, 2845, 3561
BsrFI RCCGGY 1 cut(s) 4520
BssAI RCCGGY 1 cut(s) 4520
BssECI CCNNGG 5 cut(s) 457, 628, 1759, 1869, 2235
BssNAI GTATAC 1 cut(s) 3640
BssNI GRCGYC 1 cut(s) 1845
BssSI CACGAG 2 cut(s) 1511, 2379
BssT1I CCWWGG 2 cut(s) 1869, 2235
Bst1107I GTATAC 1 cut(s) 3640
Bst2BI CACGAG 2 cut(s) 1511, 2379
Bst2UI CCWGG 8 cut(s) 458, 630, 729, 1229, 1308, 1933, 2052, 2291
Bst6I CTCTTC 4 cut(s) 1644, 2775, 4155, 4247
BstACI GRCGYC 1 cut(s) 1845
BstAPI GCANNNNNTGC 3 cut(s) 1148, 1448, 3197
BstC8I GCNNGC 3 cut(s) 712, 3373, 4522
BstDSI CCRYGG 1 cut(s) 2235
BstF5I GGATG 9 cut(s) 422, 589, 961, 965, 1342, 2422, 3612, 4029, 4279
BstH2I RGCGCY 1 cut(s) 3219
BstHHI GCGC 4 cut(s) 2367, 3070, 3218, 3739
BstMAI GTCTC 9 cut(s) 316, 581, 1075, 1604, 2179, 2235, 2790, 3629, 4509
BstNI CCWGG 8 cut(s) 458, 630, 729, 1229, 1308, 1933, 2052, 2291
BstNSI RCATGY 3 cut(s) 714, 1752, 3718
BstSCI CCNGG 8 cut(s) 456, 628, 727, 1227, 1306, 1931, 2050, 2289
BstSFI CTRYAG 2 cut(s) 297, 1248
BstSLI GKGCMC 1 cut(s) 3094
BstV2I GAAGAC 3 cut(s) 2501, 2553, 3756
BstX2I RGATCY 1 cut(s) 2190
BstYI RGATCY 1 cut(s) 2190
BstZ17I GTATAC 1 cut(s) 3640
BsuI GTATCC 3 cut(s) 1993, 3123, 4368
BtgI CCRYGG 1 cut(s) 2235
BtrI CACGTC 1 cut(s) 4238
BtsCI GGATG 9 cut(s) 422, 589, 961, 965, 1342, 2422, 3612, 4029, 4279
BtsI GCAGTG 3 cut(s) 2276, 2649, 4281
BveI ACCTGC 1 cut(s) 3769
Cac8I GCNNGC 3 cut(s) 712, 3373, 4522
CaiI CAGNNNCTG 1 cut(s) 1733
CciI TCATGA 2 cut(s) 1530, 4003
CfoI GCGC 4 cut(s) 2367, 3070, 3218, 3739
Cfr10I RCCGGY 1 cut(s) 4520
Cfr13I GGNCC 6 cut(s) 87, 454, 1383, 1557, 2287, 4366
CseI GACGC 2 cut(s) 243, 4205
Csp6I GTAC 3 cut(s) 4, 1673, 3990
CspCI CAANNNNNGTGG 4 cut(s) 2329, 2364, 3102, 3137
CviQI GTAC 3 cut(s) 4, 1673, 3990
DraI TTTAAA 1 cut(s) 3183
DraIII CACNNNGTG 1 cut(s) 683
DriI GACNNNNNGTC 2 cut(s) 1152, 4084
EaeI YGGCCR 3 cut(s) 2353, 3254, 3892
Eam1104I CTCTTC 4 cut(s) 1644, 2775, 4155, 4247
Eam1105I GACNNNNNGTC 2 cut(s) 1152, 4084
EarI CTCTTC 4 cut(s) 1644, 2775, 4155, 4247
Ecl136II GAGCTC 1 cut(s) 2483
Eco130I CCWWGG 2 cut(s) 1869, 2235
Eco24I GRGCYC 1 cut(s) 2485
Eco31I GGTCTC 4 cut(s) 581, 2235, 3629, 4509
Eco32I GATATC 3 cut(s) 745, 1245, 2252
Eco47I GGWCC 3 cut(s) 87, 1383, 2287
Eco47III AGCGCT 1 cut(s) 3217
Eco53kI GAGCTC 1 cut(s) 2483
EcoICRI GAGCTC 1 cut(s) 2483
EcoO109I RGGNCCY 1 cut(s) 2287
EcoRII CCWGG 8 cut(s) 456, 628, 727, 1227, 1306, 1931, 2050, 2289
EcoRV GATATC 3 cut(s) 745, 1245, 2252
EcoT14I CCWWGG 2 cut(s) 1869, 2235
EcoT22I ATGCAT 2 cut(s) 712, 3720
EcoT38I GRGCYC 1 cut(s) 2485
ErhI CCWWGG 2 cut(s) 1869, 2235
FaqI GGGAC 3 cut(s) 366, 2042, 4248
FauI CCCGC 1 cut(s) 1083
FauNDI CATATG 2 cut(s) 2170, 3619
FbaI TGATCA 1 cut(s) 2769
FblI GTMKAC 3 cut(s) 2406, 2523, 3639
FokI GGATG 9 cut(s) 429, 596, 948, 952, 1349, 2429, 3619, 4016, 4286
FriOI GRGCYC 1 cut(s) 2485
FspI TGCGCA 1 cut(s) 3738
GlaI GCGC 4 cut(s) 2366, 3069, 3217, 3738
GsaI CCCAGC 1 cut(s) 3204
GsuI CTGGAG 5 cut(s) 1211, 2312, 3417, 4222, 4301
HaeII RGCGCY 1 cut(s) 3219
HapII CCGG 3 cut(s) 126, 3895, 4521
HgaI GACGC 2 cut(s) 243, 4205
HhaI GCGC 4 cut(s) 2367, 3070, 3218, 3739
Hin1I GRCGYC 1 cut(s) 1845
Hin6I GCGC 4 cut(s) 2365, 3068, 3216, 3737
HinP1I GCGC 4 cut(s) 2365, 3068, 3216, 3737
HincII GTYRAC 3 cut(s) 2524, 3513, 4220
HindII GTYRAC 3 cut(s) 2524, 3513, 4220
HpaI GTTAAC 1 cut(s) 3513
HpaII CCGG 3 cut(s) 126, 3895, 4521
HphI GGTGA 5 cut(s) 695, 716, 764, 1322, 1364
Hpy166II GTNNAC 9 cut(s) 444, 1321, 1386, 2407, 2524, 3092, 3513, 3640, 4220
Hpy8I GTNNAC 9 cut(s) 444, 1321, 1386, 2407, 2524, 3092, 3513, 3640, 4220
HpyAV CCTTC 9 cut(s) 301, 500, 656, 990, 1403, 1618, 1628, 2540, 3860
HpyCH4IV ACGT 5 cut(s) 914, 1845, 3520, 4018, 4237
HpySE526I ACGT 5 cut(s) 914, 1845, 3520, 4018, 4237
Hsp92I GRCGYC 1 cut(s) 1845
HspAI GCGC 4 cut(s) 2365, 3068, 3216, 3737
Kpn2I TCCGGA 1 cut(s) 125
KroI GCCGGC 1 cut(s) 4520
KroNI GCCGGC 1 cut(s) 4522
Ksp22I TGATCA 1 cut(s) 2769
KspAI GTTAAC 1 cut(s) 3513
LguI GCTCTTC 2 cut(s) 1644, 4247
MaeII ACGT 5 cut(s) 914, 1845, 3520, 4018, 4237
MbiI CCGCTC 1 cut(s) 1944
MfeI CAATTG 8 cut(s) 306, 887, 938, 1397, 2765, 3366, 3684, 3769
MflI RGATCY 1 cut(s) 2190
MhlI GDGCHC 3 cut(s) 2485, 3094, 4208
MlsI TGGCCA 2 cut(s) 2355, 3256
MluNI TGGCCA 2 cut(s) 2355, 3256
MlyI GAGTC 8 cut(s) 131, 1187, 1218, 1269, 1291, 2961, 3429, 4301
MmeI TCCRAC 3 cut(s) 1167, 1896, 3682
Mox20I TGGCCA 2 cut(s) 2355, 3256
Mph1103I ATGCAT 2 cut(s) 712, 3720
MroI TCCGGA 1 cut(s) 125
MroNI GCCGGC 1 cut(s) 4520
MroXI GAANNNNTTC 4 cut(s) 861, 879, 2262, 4146
MscI TGGCCA 2 cut(s) 2355, 3256
MslI CAYNNNNRTG 3 cut(s) 702, 823, 2838
Msp20I TGGCCA 2 cut(s) 2355, 3256
MspA1I CMGCKG 2 cut(s) 1078, 1733
MspI CCGG 3 cut(s) 126, 3895, 4521
MspR9I CCNGG 8 cut(s) 458, 630, 729, 1229, 1308, 1933, 2052, 2291
MunI CAATTG 8 cut(s) 306, 887, 938, 1397, 2765, 3366, 3684, 3769
Mva1269I GAATGC 4 cut(s) 140, 147, 1963, 2367
MvaI CCWGG 8 cut(s) 458, 630, 729, 1229, 1308, 1933, 2052, 2291
NaeI GCCGGC 1 cut(s) 4522
NcoI CCATGG 1 cut(s) 2235
NdeI CATATG 2 cut(s) 2170, 3619
NgoMIV GCCGGC 1 cut(s) 4520
NlaIV GGNNCC 6 cut(s) 106, 1824, 2127, 2192, 3400, 3874
NmuCI GTSAC 5 cut(s) 974, 1179, 1677, 4415, 4470
NsbI TGCGCA 1 cut(s) 3738
NsiI ATGCAT 2 cut(s) 712, 3720
NspI RCATGY 3 cut(s) 714, 1752, 3718
PaeI GCATGC 1 cut(s) 714
PagI TCATGA 2 cut(s) 1530, 4003
PciI ACATGT 1 cut(s) 1748
PciSI GCTCTTC 2 cut(s) 1644, 4247
PctI GAATGC 4 cut(s) 140, 147, 1963, 2367
PdiI GCCGGC 1 cut(s) 4522
PdmI GAANNNNTTC 4 cut(s) 861, 879, 2262, 4146
PflFI GACNNNGTC 1 cut(s) 3358
PflMI CCANNNNNTGG 1 cut(s) 3573
PleI GAGTC 8 cut(s) 130, 1186, 1218, 1269, 1291, 2960, 3429, 4301
PpsI GAGTC 8 cut(s) 130, 1186, 1218, 1269, 1291, 2960, 3429, 4301
PpuMI RGGWCCY 1 cut(s) 2287
PscI ACATGT 1 cut(s) 1748
PshBI ATTAAT 1 cut(s) 2900
Psp124BI GAGCTC 1 cut(s) 2485
Psp1406I AACGTT 1 cut(s) 914
Psp5II RGGWCCY 1 cut(s) 2287
Psp6I CCWGG 8 cut(s) 456, 628, 727, 1227, 1306, 1931, 2050, 2289
PspFI CCCAGC 1 cut(s) 3200
PspGI CCWGG 8 cut(s) 456, 628, 727, 1227, 1306, 1931, 2050, 2289
PspN4I GGNNCC 6 cut(s) 106, 1824, 2127, 2192, 3400, 3874
PspPI GGNCC 6 cut(s) 87, 454, 1383, 1557, 2287, 4366
PspPPI RGGWCCY 1 cut(s) 2287
PsrI GAACNNNNNNTAC 2 cut(s) 3228, 3260
PstI CTGCAG 1 cut(s) 1252
PstNI CAGNNNCTG 1 cut(s) 1733
PsuI RGATCY 1 cut(s) 2190
PsyI GACNNNGTC 1 cut(s) 3358
PvuII CAGCTG 1 cut(s) 1733
RsaI GTAC 3 cut(s) 5, 1674, 3991
RsaNI GTAC 3 cut(s) 4, 1673, 3990
RseI CAYNNNNRTG 3 cut(s) 702, 823, 2838
SacI GAGCTC 1 cut(s) 2485
SalI GTCGAC 1 cut(s) 2522
SapI GCTCTTC 2 cut(s) 1644, 4247
Sau96I GGNCC 6 cut(s) 87, 454, 1383, 1557, 2287, 4366
ScaI AGTACT 1 cut(s) 1674
SchI GAGTC 8 cut(s) 131, 1187, 1218, 1269, 1291, 2961, 3429, 4301
ScrFI CCNGG 8 cut(s) 458, 630, 729, 1229, 1308, 1933, 2052, 2291
SduI GDGCHC 3 cut(s) 2485, 3094, 4208
SfcI CTRYAG 2 cut(s) 297, 1248
SinI GGWCC 3 cut(s) 87, 1383, 2287
SmiMI CAYNNNNRTG 3 cut(s) 702, 823, 2838
SmlI CTYRAG 4 cut(s) 866, 1049, 1958, 4121
SmoI CTYRAG 4 cut(s) 866, 1049, 1958, 4121
SpeI ACTAGT 1 cut(s) 2003
SphI GCATGC 1 cut(s) 714
SsiI CCGC 2 cut(s) 1076, 1944
SspI AATATT 1 cut(s) 2218
SstI GAGCTC 1 cut(s) 2485
StyD4I CCNGG 8 cut(s) 456, 628, 727, 1227, 1306, 1931, 2050, 2289
StyI CCWWGG 2 cut(s) 1869, 2235
TaiI ACGT 5 cut(s) 917, 1848, 3523, 4021, 4240
TatI WGTACW 1 cut(s) 1672
TseFI GTSAC 5 cut(s) 974, 1179, 1677, 4415, 4470
Tsp45I GTSAC 5 cut(s) 974, 1179, 1677, 4415, 4470
TspGWI ACGGA 3 cut(s) 3077, 3682, 3968
Tth111I GACNNNGTC 1 cut(s) 3358
Van91I CCANNNNNTGG 1 cut(s) 3573
VneI GTGCAC 1 cut(s) 3090
VpaK11BI GGWCC 3 cut(s) 87, 1383, 2287
VspI ATTAAT 1 cut(s) 2900
XbaI TCTAGA 2 cut(s) 1124, 4168
XceI RCATGY 3 cut(s) 714, 1752, 3718
XcmI CCANNNNNNNNNTGG 1 cut(s) 4288
XmiI GTMKAC 3 cut(s) 2406, 2523, 3639
XmnI GAANNNNTTC 4 cut(s) 861, 879, 2262, 4146
ZraI GACGTC 1 cut(s) 1846
ZrmI AGTACT 1 cut(s) 1674
Zsp2I ATGCAT 2 cut(s) 712, 3720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.