Rroxscaffold_3G00260190

ABC transporter C family member 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0002044
Physical Location & Seq
Reverse (-)
54637865 .. 54644152
6288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00260190.1

Sequence Viewer

Length: 4470 bp
ATGGCGGAAGGTTTCTGGACCTTGTTTTGTGATTGTTCAACTGAGTCTGGAATTGAATGCAGTTCTGACATTGCAGCCATCATCAATCCAGATTCATGTATCAACAATATTGCGGTCATTGCAGTTGATATCTTGCTTCTGTTCATCTTGTTTTGTATCTTCATCTATAGAACATTATCAAAGAAGGTCATAGCGTCATCAGAGTCTTACACCTTCTCTGCTGTGTCAATTGTTTCGGCCACTTTCAATGCCTGTTTGTCTTTGGCCTATTTGGGTTTTGGGATATGGAAAACGATCGAGAAAGTAAATACAGATCAGACTTGTTTACCTCTGCATGGATGGATAGTATTTTTCTTTCAGGGGTTTACTTGGTTGGTGCTGGGATTAACCATAAACCTGAAGAAGCCAAACCCTCCCCAAATTGCGATAACAAAAGTTCTTTCAATTCTTGGCTCTTTGATTGCAGTTTTTCTTTGTGGTTCATCGATTTGGGAAGCAACTCTTGATGAAGCAGTATCGGTTATGATCATTTTGGACATTCTTTGTTTCCCTGGATCAGTTCTCTTGCTTTTTAGTGCATTTGATGGAAGCAATGTTGCTAAAGGTGATCCACAAGTCCATGTTGACGATGCTTTGCATACACCTTTGCTGGGTGCAGAATCGGATATCGCAGGTGAAATCACTTCAAATCATGACATTGTTACTCCTTTTGCAAAAGCTGGTTTATTTAGTATAATGTCATTTTGGTGGTTGAATCCATTACTGAAAAAAGGAAAGGGGAAGATTCTTGAGAATGAAGATATCCCACAGCTGCGACAAGCTGATCAAGCACGAACACTGTACTTGATGTTTACGGAGCAAGTGCAGAAAAGGAATGAGAGCAGTTCATCTGATGATGACCCTTCTATTTTGTCCACAATTTTTTTCTGCCAGAGGAAAGCTATATTAATTTCTGGTATATTTGCACTCATCAAGGTTCTCACACTGACTAGCGGTCCTCTGTTTCTGATGGCCTTCATTAGTGTCGTTGAAGGAGAAGCAGCTTTTGAAGGTGAAGGCTATGCACTGACAGCTGGTCTCTTTGTGGTTAAAGTCGCGGAGTCATTGTCGGAGAGGCAATGGTTCTTCAGAACTAGACTAATTGGTCTCCAGGTAAGATCACTGATATCTGCAGCAATATATCAGAAGCAACTAAGACTCTCAAATGCTGCCAAGATGACTCATTCTCCTGGTGAGATAGTGAATTATGTGAGCGTGGATGCTTATAGAATTGGTGAATTTCCATTCTGGTTTCATCAGATATGGTCCACAAGCCTTCAGCTCTGTCTCTCATTACTTATTGTTTACTTCTCTGTTGGAATAGCAACTCTCGCAGCTCTAACTGTGCTCATATTGATTGTGCTGGCAAGCTCTCCCTTGGTCAAGTTGCAGCATGATTATCAAACAAAGTTCATGGTAGCTCAAAATAAGAGGCTGAAGGCCATAACAGAAGCACTATCAAATATGAAGATCTTAAAGCTGTATTCATGGGAGACAAATTTCAAGAAAGTCATAGAGGGGTTAAGAGCAGAAGAACTCAAATGGATCAATAAAGTACTGTTACAAAAGGGGTATTATATCACTTTGTTCTGGTCATCTCCTATTTTGGTAGCAGCCGTTACCTTTTGGACGTGCTACTTCCTGGGAATTACACTCACTGCTAGTAATGTTTTCACATTTCTAGCTACTTTGCGTATTGTTCAGGAGCCAATTAGGCTTATCCCAGATATTTTTGGATCATTTATTGAAGCCAAGGTCTCATTCTCACGCATTGTGAAGTTCCTTGATGCACAGGAGTTGGAGAACAGAGATACAAGGAAAGAGAATATTGGCAAAGAGGCTGAGCATTCCATTGTCATTAGAGCCTCCGAAATTTCATGGGACACTGATGCAACCAAGGCCACATTAAGGAACTTGAACTTGGTGGTTGAACCAGGAGAAAAATTAGCTCTTTGTGGAGAGGTTGGCTCCGGTAAATCAACCCTTTTAGCTGCAATTCTAGGAGAAGTTCCCCTTATCAATGGTATTGTTCAAGTGCATGGGAAGATAGCATATGTTCCTCAATCGGCATGGATTCAAACAGGAAGTATACAAGAAAATATTTTGTTTGGATCCACCATGGATCATGTCAGGTACCAAGAGACGCTTCATAAGTGTTCGTTAGTTAAGGATCTAGAGGTCCTTCCATTTGGAGATCTCACTCAGATAGGAGAAAGAGGTGTCAATCTAAGTGGTGGCCAAAAGCAGCGCATTCAACTTGCGCGTGCCCTCTATCAAAATGCTGATGTCTATCTCTTGGATGACCCTTTCAGTGCAGTTGATGCTCATACTGCAAGCAGCCTATTCAATGATTATGTCATGGGAGCTCTGGCAAAGAAGACGGTGTTGCTTGTGACACATCAAGTCGACTTCCTTCCGGGTTTTAGTTCTATTTTGTTGATGTCTTCAGGGCAAATTTTAAGGGCAGGACCTTACAAAGAGTTGCTGGCTTCTTGTCAAGAGTTCCAAGACCTTGTCAATGCACATAATGACACTGCTGGTTCCGAGAGTCAAGTTGGATATGCTGCTACTAGAAAACATAAATCATCTGCCGAGGAGGTTGAAAAAGTTAATACTGAGGTACAGTTCAAAGAATCTTCAGGAGATCAATTGATTAAAAAAGAAGAGAGAGAAACAGGAGACACTGGTTTCAAGCCATACATTCAGTATTTGAAGCATAGCAAGGGATTTTTTCACTTCTTCTCATCAATCTTTTTTCACGTAATATTCATACTGGGGCAATTAGTACAGGCTTATTGGTTGGCTTCCAATCTTCAGGATTATAAGGTGTCAAGAGTCGAGCTCTTCGGAGTTTATTCATTGATCATGTGTATCATTTCATTCTGTTTGCTTCTACGCTCTCTTAAGGTAGTCCAATTAGGATGTGGAGCATCAAGATCCATTTTCTTTACACTACTGAACTCCCTTTTCCGAGCACCAATGCTGTTTTACGATTCAACACCTCTGGGGAGGATACTTAGTCGAGTATCTCTAGATATGAATATCATTGACCTTGAAGTAGCTTTAAAGCTATCCGTAGCTGTTGGGACAACTCTGAACGCTTATAGCATATTCTTAGTAATGATTTATCTTACTTGGCCACTCGTGTTTCTGATTATACCGACACTTTATGCTACCTTTCGCATTCAGAATTACTACTTTTCATCTGCAAAAGAGTTAATGCGAATGAATGGCACGACTAAGTCTGCACTTGCAAGCCACATTTCTGAATCTATTGCTGGAGCCGTGACAATCAGAGCTTTTGGAGAGGAGGAAAGATTTTTCTCCAAAAACTTGGAATTCATTGATGCAAATTCTAGTGCTGACTTCAATAGCTTTTCAACAAATGAATGGTTAATTCAACGTCTAGAATTGCTTAGCGCCATTGTTCTCTCAGCCTCAACACTTGCCATTACTTTGACTCAATTCGATGCTTCTTCCTCTGGATTTATTGGGATGACACTATCATATGGCCTTTCATTAAATGTATTCCTAGTAATTTCTGTCCAATTTCAGTGCATGCTAGCAAATTCAATAATTTCTGTAGAAAGGGTGGAACAATACATGCACATTCCCAGCGAAGCCGAAGAAGTAATAGAAGAAAACCGACCTGCACACAATTGGCCTATTGTTGGTAAAGTGGAAATACATGACTTAAAGGTAAGATATAGGCCAAATTCTCCTTTCGTTCTCCACGGGATAAATTGCATCATTGACGGAGGCTACAAAATTGGAATTGTTGGCCGGACTGGAAGTGGAAAGACAACTCTTGTCAGCGTTTTGTTTCGTCTGGTAGAGCCGACAGAGGGAAAAGTCATTGTAGATGGCTATGACATTTGTACAATTGGCCTTCATGATTTGAGATCACGTTTTGGGATCATCCCTCAAGATCCAACATTATTCAGTGGGTCTGTGAGATTCAATCTGGACCCCTTATCAGAGCATACTGATCGTGAGATATGGGAGGTTCTTGAGAAATGTCAGTTACGAGAGGCCATCAGAGAAAAAGAAGAGGGCTTGTATTCTTTAGTTGTGGAAGATGGAACAAACTGGAGCATGGGGCAGCGACAGCTATTCTGCTTGGGGCGCGCTTTATTGAAGAGGAGCCGAATACTAGTGCTGGATGAAGCTACTGCATCGATGGACAATACAACAGACTCTATTCTGCAGAAAACTATTAGTGCGGAATTTGTAGACTCCACTGTTATAACAGTGGCCCATAGGATACCAACCGTGATGGACTGCACTAAGGTGCTTGCTCTTAGTGATGGTAAAGTAGTGGAGTATGACGAGCCAATTAAGCTGATGAACAATGAGGGATCACTGTTCGGGCAGCTTGTCAAGGAATATTGGTCTCGTTCTGCCAAAGCTAGTATGCACTCAGAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

1489

Amino Acids

165.81

Weight (kDa)

5.8

Isoelectric Point (pI)

32.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABCC10_N PF24358 3 - 198 3.2e-68 ABCC10 N-terminal domain
ABC_membrane PF00664 315 - 583 2.2e-26 ABC transporter transmembrane region
ABC_tran PF00005 649 - 783 3.5e-22 ABC transporter
ABC_membrane PF00664 926 - 1183 6.5e-25 ABC transporter transmembrane region
ABC_tran PF00005 1257 - 1405 5.6e-24 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 2862, 4286
AarI CACCTGC 1 cut(s) 662
AasI GACNNNNNNGTC 1 cut(s) 1143
Acc36I ACCTGC 2 cut(s) 662, 3697
Acc65I GGTACC 1 cut(s) 2172
AccB1I GGYRCC 1 cut(s) 2172
AccI GTMKAC 3 cut(s) 2128, 2445, 4272
AccII CGCG 3 cut(s) 1097, 2302, 4167
AciI CCGC 5 cut(s) 5, 113, 993, 1097, 4262
AcoI YGGCCR 4 cut(s) 237, 2275, 3176, 3820
AcsI RAATTY 9 cut(s) 1277, 1537, 1911, 2493, 3377, 3391, 3607, 3754, 4265
AcuI CTGAAG 7 cut(s) 419, 1111, 1301, 1496, 2469, 2661, 2837
AfaI GTAC 6 cut(s) 842, 1596, 2174, 2661, 2826, 3919
AfiI CCNNNNNNNGG 5 cut(s) 335, 650, 1947, 3710, 3884
AflII CTTAAG 1 cut(s) 2942
AhdI GACNNNNNGTC 2 cut(s) 993, 1074
AhlI ACTAGT 1 cut(s) 4192
AjiI CACGTC 1 cut(s) 1671
AjnI CCWGG 5 cut(s) 550, 1149, 1228, 1680, 1972
AjuI GAANNNNNNNTTGG 6 cut(s) 1784, 1816, 1943, 1975, 2169, 2201
AleI CACNNNNGTG 1 cut(s) 4328
Alw21I GWGCWC 4 cut(s) 1389, 2407, 2883, 3016
Alw26I GTCTC 8 cut(s) 1082, 1151, 1331, 1526, 1801, 2174, 2712, 4437
ApoI RAATTY 9 cut(s) 1277, 1537, 1911, 2493, 3377, 3391, 3607, 3754, 4265
AseI ATTAAT 1 cut(s) 947
Asp718I GGTACC 1 cut(s) 2172
AspLEI GCGC 5 cut(s) 2289, 2302, 3461, 4167, 4169
AspS9I GGNCC 7 cut(s) 18, 995, 1305, 2218, 2507, 4006, 4294
AsuC2I CCSGG 1 cut(s) 2457
AsuHPI GGTGA 5 cut(s) 617, 686, 1064, 1244, 1286
AsuNHI GCTAGC 1 cut(s) 3601
AvaII GGWCC 6 cut(s) 18, 995, 1305, 2218, 2507, 4006
BaeGI GKGCMC 1 cut(s) 2308
BalI TGGCCA 2 cut(s) 2277, 3178
BamHI GGATCC 1 cut(s) 2150
BanI GGYRCC 1 cut(s) 2172
BanII GRGCYC 2 cut(s) 2407, 2883
BauI CACGAG 1 cut(s) 3182
BbsI GAAGAC 2 cut(s) 2423, 2475
Bbv12I GWGCWC 4 cut(s) 1389, 2407, 2883, 3016
BceAI ACGGC 2 cut(s) 1640, 3308
BcgI CGANNNNNNTGC 2 cut(s) 4010, 4044
BciT130I CCWGG 5 cut(s) 552, 1151, 1230, 1682, 1974
BciVI GTATCC 2 cut(s) 3045, 4296
BclI TGATCA 3 cut(s) 525, 823, 2901
BcnI CCSGG 1 cut(s) 2457
BcoDI GTCTC 8 cut(s) 1082, 1151, 1331, 1526, 1801, 2174, 2712, 4437
BcuI ACTAGT 1 cut(s) 4192
BfmI CTRYAG 4 cut(s) 166, 1170, 3621, 4244
BfoI RGCGCY 1 cut(s) 3462
BfrI CTTAAG 1 cut(s) 2942
BfuAI ACCTGC 2 cut(s) 662, 3697
BfuI GTATCC 2 cut(s) 3045, 4296
BglI GCCNNNNNGGC 1 cut(s) 1753
BglII AGATCT 2 cut(s) 1509, 2233
BlpI GCTNAGC 2 cut(s) 1881, 3455
BmcAI AGTACT 1 cut(s) 1596
Bme1390I CCNGG 6 cut(s) 552, 1151, 1230, 1682, 1974, 2457
Bme18I GGWCC 6 cut(s) 18, 995, 1305, 2218, 2507, 4006
BmeRI GACNNNNNGTC 2 cut(s) 993, 1074
BmgBI CACGTC 1 cut(s) 1671
BmgT120I GGNCC 7 cut(s) 18, 995, 1305, 2218, 2507, 4006, 4294
BmiI GGNNCC 8 cut(s) 1746, 2008, 2152, 2174, 2581, 3322, 4008, 4184
BmrFI CCNGG 6 cut(s) 552, 1151, 1230, 1682, 1974, 2457
BmrI ACTGGG 1 cut(s) 2822
BmtI GCTAGC 1 cut(s) 3605
BmuI ACTGGG 1 cut(s) 2822
BpiI GAAGAC 2 cut(s) 2423, 2475
BplI GAGNNNNNCTC 4 cut(s) 1991, 2023, 2865, 2897
BpmI CTGGAG 3 cut(s) 1133, 3339, 4150
Bpu1102I GCTNAGC 2 cut(s) 1881, 3455
BpuEI CTTGAG 3 cut(s) 809, 3948, 4070
BpuMI CCSGG 1 cut(s) 2457
Bsa29I ATCGAT 2 cut(s) 485, 4217
BsaAI YACGTR 1 cut(s) 2800
BsaBI GATNNNNATC 1 cut(s) 2328
BsaI GGTCTC 4 cut(s) 1082, 1151, 1801, 4437
BsaJI CCNNGG 8 cut(s) 550, 1416, 1681, 1791, 1935, 2157, 2631, 3772
BsaWI WCCGGW 1 cut(s) 2009
BsaXI ACNNNNNCTCC 4 cut(s) 1091, 1121, 1210, 1240
Bsc4I CCNNNNNNNGG 5 cut(s) 335, 650, 1947, 3710, 3884
Bse1I ACTGG 4 cut(s) 2728, 2817, 3832, 4133
Bse3DI GCAATG 4 cut(s) 69, 117, 598, 1124
Bse8I GATNNNNATC 1 cut(s) 2328
BseBI CCWGG 5 cut(s) 552, 1151, 1230, 1682, 1974
BseCI ATCGAT 2 cut(s) 485, 4217
BseDI CCNNGG 8 cut(s) 550, 1416, 1681, 1791, 1935, 2157, 2631, 3772
BseGI GGATG 7 cut(s) 344, 1264, 2344, 2966, 3540, 3957, 4207
BseJI GATNNNNATC 1 cut(s) 2328
BseLI CCNNNNNNNGG 5 cut(s) 335, 650, 1947, 3710, 3884
BseMI GCAATG 4 cut(s) 69, 117, 598, 1124
BseMII CTCAG 5 cut(s) 33, 1872, 2255, 2646, 3486
BseNI ACTGG 4 cut(s) 2728, 2817, 3832, 4133
BsePI GCGCGC 1 cut(s) 4165
BseRI GAGGAG 3 cut(s) 2648, 3362, 4195
BseSI GKGCMC 1 cut(s) 2308
BseYI CCCAGC 3 cut(s) 379, 649, 3653
BsgI GTGCAG 6 cut(s) 675, 884, 2373, 3270, 3675, 4306
Bsh1236I CGCG 3 cut(s) 1097, 2302, 4167
Bsh1285I CGRYCG 1 cut(s) 297
BshNI GGYRCC 1 cut(s) 2172
BshVI ATCGAT 2 cut(s) 485, 4217
BsiEI CGRYCG 1 cut(s) 297
BsiHKAI GWGCWC 4 cut(s) 1389, 2407, 2883, 3016
BsiSI CCGG 3 cut(s) 2010, 2456, 3823
BslFI GGGAC 2 cut(s) 1934, 3139
BslI CCNNNNNNNGG 5 cut(s) 335, 650, 1947, 3710, 3884
BsmAI GTCTC 8 cut(s) 1082, 1151, 1331, 1526, 1801, 2174, 2712, 4437
BsmBI CGTCTC 1 cut(s) 2174
BsmFI GGGAC 2 cut(s) 1934, 3139
BsmI GAATGC 4 cut(s) 62, 1885, 2289, 3222
Bso31I GGTCTC 4 cut(s) 1082, 1151, 1801, 4437
Bsp1286I GDGCHC 5 cut(s) 1389, 2308, 2407, 2883, 3016
Bsp1407I TGTACA 1 cut(s) 3917
Bsp1720I GCTNAGC 2 cut(s) 1881, 3455
Bsp19I CCATGG 1 cut(s) 2157
BspACI CCGC 5 cut(s) 5, 113, 993, 1097, 4262
BspCNI CTCAG 5 cut(s) 34, 1873, 2254, 2647, 3485
BspDI ATCGAT 2 cut(s) 485, 4217
BspFNI CGCG 3 cut(s) 1097, 2302, 4167
BspHI TCATGA 2 cut(s) 691, 3931
BspLI GGNNCC 8 cut(s) 1746, 2008, 2152, 2174, 2581, 3322, 4008, 4184
BspMAI CTGCAG 2 cut(s) 1174, 4248
BspMI ACCTGC 2 cut(s) 662, 3697
BspOI GCTAGC 1 cut(s) 3605
BspQI GCTCTTC 1 cut(s) 2888
BspT107I GGYRCC 1 cut(s) 2172
BspTI CTTAAG 1 cut(s) 2942
BspTNI GGTCTC 4 cut(s) 1082, 1151, 1801, 4437
BsrDI GCAATG 4 cut(s) 69, 117, 598, 1124
BsrGI TGTACA 1 cut(s) 3917
BsrI ACTGG 4 cut(s) 2728, 2817, 3832, 4133
BssECI CCNNGG 8 cut(s) 550, 1416, 1681, 1791, 1935, 2157, 2631, 3772
BssHII GCGCGC 1 cut(s) 4165
BssNAI GTATAC 1 cut(s) 2129
BssSI CACGAG 1 cut(s) 3182
BssT1I CCWWGG 4 cut(s) 1416, 1791, 1935, 2157
Bst1107I GTATAC 1 cut(s) 2129
Bst2BI CACGAG 1 cut(s) 3182
Bst2UI CCWGG 5 cut(s) 552, 1151, 1230, 1682, 1974
Bst4CI ACNGT 9 cut(s) 840, 1384, 1599, 2422, 2664, 4282, 4291, 4312, 4404
Bst6I CTCTTC 4 cut(s) 2697, 2888, 4083, 4172
BstAFI CTTAAG 1 cut(s) 2942
BstAPI GCANNNNNTGC 1 cut(s) 2360
BstAUI TGTACA 1 cut(s) 3917
BstBAI YACGTR 1 cut(s) 2800
BstDSI CCRYGG 2 cut(s) 2157, 3772
BstF5I GGATG 7 cut(s) 344, 1264, 2344, 2966, 3540, 3957, 4207
BstFNI CGCG 3 cut(s) 1097, 2302, 4167
BstH2I RGCGCY 1 cut(s) 3462
BstHHI GCGC 5 cut(s) 2289, 2302, 3461, 4167, 4169
BstMAI GTCTC 8 cut(s) 1082, 1151, 1331, 1526, 1801, 2174, 2712, 4437
BstMCI CGRYCG 1 cut(s) 297
BstNI CCWGG 5 cut(s) 552, 1151, 1230, 1682, 1974
BstNSI RCATGY 2 cut(s) 3601, 3646
BstSCI CCNGG 6 cut(s) 550, 1149, 1228, 1680, 1972, 2455
BstSFI CTRYAG 4 cut(s) 166, 1170, 3621, 4244
BstSLI GKGCMC 1 cut(s) 2308
BstUI CGCG 3 cut(s) 1097, 2302, 4167
BstV2I GAAGAC 2 cut(s) 2423, 2475
BstX2I RGATCY 6 cut(s) 1509, 2150, 2209, 2233, 2975, 3967
BstXI CCANNNNNNTGG 1 cut(s) 3373
BstYI RGATCY 6 cut(s) 1509, 2150, 2209, 2233, 2975, 3967
BstZ17I GTATAC 1 cut(s) 2129
Bsu15I ATCGAT 2 cut(s) 485, 4217
BsuI GTATCC 2 cut(s) 3045, 4296
BsuTUI ATCGAT 2 cut(s) 485, 4217
BtgI CCRYGG 2 cut(s) 2157, 3772
BtrI CACGTC 1 cut(s) 1671
BtsCI GGATG 7 cut(s) 344, 1264, 2344, 2966, 3540, 3957, 4207
BtsI GCAGTG 2 cut(s) 1695, 2571
BveI ACCTGC 2 cut(s) 662, 3697
CciI TCATGA 2 cut(s) 691, 3931
CfoI GCGC 5 cut(s) 2289, 2302, 3461, 4167, 4169
Cfr13I GGNCC 7 cut(s) 18, 995, 1305, 2218, 2507, 4006, 4294
ClaI ATCGAT 2 cut(s) 485, 4217
CseI GACGC 2 cut(s) 183, 2191
Csp6I GTAC 6 cut(s) 841, 1595, 2173, 2660, 2825, 3918
CspCI CAANNNNNGTGG 2 cut(s) 2251, 2286
CviQI GTAC 6 cut(s) 841, 1595, 2173, 2660, 2825, 3918
DraI TTTAAA 1 cut(s) 3105
DrdI GACNNNNNNGTC 1 cut(s) 1143
DriI GACNNNNNGTC 2 cut(s) 993, 1074
DseDI GACNNNNNNGTC 1 cut(s) 1143
EaeI YGGCCR 4 cut(s) 237, 2275, 3176, 3820
Eam1104I CTCTTC 4 cut(s) 2697, 2888, 4083, 4172
Eam1105I GACNNNNNGTC 2 cut(s) 993, 1074
EarI CTCTTC 4 cut(s) 2697, 2888, 4083, 4172
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 2 cut(s) 2405, 2881
Eco130I CCWWGG 4 cut(s) 1416, 1791, 1935, 2157
Eco24I GRGCYC 2 cut(s) 2407, 2883
Eco31I GGTCTC 4 cut(s) 1082, 1151, 1801, 4437
Eco32I GATATC 4 cut(s) 130, 667, 802, 1167
Eco47I GGWCC 6 cut(s) 18, 995, 1305, 2218, 2507, 4006
Eco53kI GAGCTC 2 cut(s) 2405, 2881
Eco57I CTGAAG 7 cut(s) 419, 1111, 1301, 1496, 2469, 2661, 2837
EcoICRI GAGCTC 2 cut(s) 2405, 2881
EcoO109I RGGNCCY 2 cut(s) 2218, 2507
EcoRI GAATTC 1 cut(s) 3377
EcoRII CCWGG 5 cut(s) 550, 1149, 1228, 1680, 1972
EcoRV GATATC 4 cut(s) 130, 667, 802, 1167
EcoT14I CCWWGG 4 cut(s) 1416, 1791, 1935, 2157
EcoT38I GRGCYC 2 cut(s) 2407, 2883
ErhI CCWWGG 4 cut(s) 1416, 1791, 1935, 2157
Esp3I CGTCTC 1 cut(s) 2174
FalI AAGNNNNNCTT 6 cut(s) 486, 518, 2037, 2069, 2169, 2201
FaqI GGGAC 2 cut(s) 1934, 3139
FauNDI CATATG 2 cut(s) 2092, 3547
FbaI TGATCA 3 cut(s) 525, 823, 2901
FblI GTMKAC 3 cut(s) 2128, 2445, 4272
FokI GGATG 7 cut(s) 351, 1271, 2351, 2973, 3547, 3944, 4214
FriOI GRGCYC 2 cut(s) 2407, 2883
GlaI GCGC 5 cut(s) 2288, 2301, 3460, 4166, 4168
GsaI CCCAGC 3 cut(s) 383, 653, 3657
GsuI CTGGAG 3 cut(s) 1133, 3339, 4150
HaeII RGCGCY 1 cut(s) 3462
HapII CCGG 3 cut(s) 2010, 2456, 3823
HgaI GACGC 2 cut(s) 183, 2191
HhaI GCGC 5 cut(s) 2289, 2302, 3461, 4167, 4169
Hin6I GCGC 5 cut(s) 2287, 2300, 3459, 4165, 4167
HinP1I GCGC 5 cut(s) 2287, 2300, 3459, 4165, 4167
HincII GTYRAC 2 cut(s) 625, 2446
HindII GTYRAC 2 cut(s) 625, 2446
HpaII CCGG 3 cut(s) 2010, 2456, 3823
HphI GGTGA 5 cut(s) 617, 686, 1064, 1244, 1286
HpyCH4III ACNGT 9 cut(s) 840, 1384, 1599, 2422, 2664, 4282, 4291, 4312, 4404
HpyCH4IV ACGT 4 cut(s) 1670, 2799, 3442, 3946
HpySE526I ACGT 4 cut(s) 1670, 2799, 3442, 3946
HspAI GCGC 5 cut(s) 2287, 2300, 3459, 4165, 4167
KpnI GGTACC 1 cut(s) 2176
Ksp22I TGATCA 3 cut(s) 525, 823, 2901
LguI GCTCTTC 1 cut(s) 2888
LmnI GCTCC 8 cut(s) 856, 1744, 2012, 2402, 2966, 3320, 4131, 4182
MaeII ACGT 4 cut(s) 1670, 2799, 3442, 3946
MaeIII GTNAC 6 cut(s) 700, 1599, 1657, 2431, 3325, 4062
MfeI CAATTG 4 cut(s) 228, 2687, 3697, 3921
MflI RGATCY 6 cut(s) 1509, 2150, 2209, 2233, 2975, 3967
MhlI GDGCHC 5 cut(s) 1389, 2308, 2407, 2883, 3016
MlsI TGGCCA 2 cut(s) 2277, 3178
MluNI TGGCCA 2 cut(s) 2277, 3178
MmeI TCCRAC 5 cut(s) 1089, 1336, 1818, 2575, 3995
Mox20I TGGCCA 2 cut(s) 2277, 3178
MscI TGGCCA 2 cut(s) 2277, 3178
MslI CAYNNNNRTG 2 cut(s) 745, 4328
Msp20I TGGCCA 2 cut(s) 2277, 3178
MspA1I CMGCKG 2 cut(s) 811, 1073
MspCI CTTAAG 1 cut(s) 2942
MspI CCGG 3 cut(s) 2010, 2456, 3823
MspR9I CCNGG 6 cut(s) 552, 1151, 1230, 1682, 1974, 2457
MunI CAATTG 4 cut(s) 228, 2687, 3697, 3921
Mva1269I GAATGC 4 cut(s) 62, 1885, 2289, 3222
MvaI CCWGG 5 cut(s) 552, 1151, 1230, 1682, 1974
MvnI CGCG 3 cut(s) 1097, 2302, 4167
NciI CCSGG 1 cut(s) 2457
NcoI CCATGG 1 cut(s) 2157
NdeI CATATG 2 cut(s) 2092, 3547
NheI GCTAGC 1 cut(s) 3601
NlaIV GGNNCC 8 cut(s) 1746, 2008, 2152, 2174, 2581, 3322, 4008, 4184
NmeAIII GCCGAG 1 cut(s) 2656
NmuCI GTSAC 2 cut(s) 2431, 3325
NspI RCATGY 2 cut(s) 3601, 3646
OliI CACNNNNGTG 1 cut(s) 4328
PaeI GCATGC 1 cut(s) 3601
PagI TCATGA 2 cut(s) 691, 3931
PaqCI CACCTGC 1 cut(s) 662
PauI GCGCGC 1 cut(s) 4165
PciSI GCTCTTC 1 cut(s) 2888
PctI GAATGC 4 cut(s) 62, 1885, 2289, 3222
PfeI GAWTC 9 cut(s) 92, 659, 754, 784, 2113, 2672, 3032, 3308, 3996
PflFI GACNNNGTC 2 cut(s) 2552, 3280
Ple19I CGATCG 1 cut(s) 297
Ppu21I YACGTR 1 cut(s) 2800
PpuMI RGGWCCY 2 cut(s) 2218, 2507
PshBI ATTAAT 1 cut(s) 947
PsiI TTATAA 2 cut(s) 2862, 4286
Psp124BI GAGCTC 2 cut(s) 2407, 2883
Psp5II RGGWCCY 2 cut(s) 2218, 2507
Psp6I CCWGG 5 cut(s) 550, 1149, 1228, 1680, 1972
PspFI CCCAGC 3 cut(s) 379, 649, 3653
PspGI CCWGG 5 cut(s) 550, 1149, 1228, 1680, 1972
PspN4I GGNNCC 8 cut(s) 1746, 2008, 2152, 2174, 2581, 3322, 4008, 4184
PspPI GGNCC 7 cut(s) 18, 995, 1305, 2218, 2507, 4006, 4294
PspPPI RGGWCCY 2 cut(s) 2218, 2507
PstI CTGCAG 2 cut(s) 1174, 4248
PsuI RGATCY 6 cut(s) 1509, 2150, 2209, 2233, 2975, 3967
PsyI GACNNNGTC 2 cut(s) 2552, 3280
PteI GCGCGC 1 cut(s) 4165
PvuI CGATCG 1 cut(s) 297
PvuII CAGCTG 2 cut(s) 811, 1073
RsaI GTAC 6 cut(s) 842, 1596, 2174, 2661, 2826, 3919
RsaNI GTAC 6 cut(s) 841, 1595, 2173, 2660, 2825, 3918
RseI CAYNNNNRTG 2 cut(s) 745, 4328
SacI GAGCTC 2 cut(s) 2407, 2883
SalI GTCGAC 1 cut(s) 2444
SapI GCTCTTC 1 cut(s) 2888
Sau96I GGNCC 7 cut(s) 18, 995, 1305, 2218, 2507, 4006, 4294
ScaI AGTACT 1 cut(s) 1596
ScrFI CCNGG 6 cut(s) 552, 1151, 1230, 1682, 1974, 2457
SduI GDGCHC 5 cut(s) 1389, 2308, 2407, 2883, 3016
SfcI CTRYAG 4 cut(s) 166, 1170, 3621, 4244
SinI GGWCC 6 cut(s) 18, 995, 1305, 2218, 2507, 4006
SmiMI CAYNNNNRTG 2 cut(s) 745, 4328
SmlI CTYRAG 4 cut(s) 788, 2942, 3963, 4049
SmoI CTYRAG 4 cut(s) 788, 2942, 3963, 4049
SpeI ACTAGT 1 cut(s) 4192
SphI GCATGC 1 cut(s) 3601
SsiI CCGC 5 cut(s) 5, 113, 993, 1097, 4262
SspI AATATT 6 cut(s) 109, 1867, 2140, 2805, 4427, 4466
SstI GAGCTC 2 cut(s) 2407, 2883
StyD4I CCNGG 6 cut(s) 550, 1149, 1228, 1680, 1972, 2455
StyI CCWWGG 4 cut(s) 1416, 1791, 1935, 2157
TaaI ACNGT 9 cut(s) 840, 1384, 1599, 2422, 2664, 4282, 4291, 4312, 4404
TaiI ACGT 4 cut(s) 1673, 2802, 3445, 3949
TaqI TCGA 7 cut(s) 297, 485, 2445, 2877, 3061, 3507, 4217
TatI WGTACW 4 cut(s) 840, 1594, 2824, 3917
TfiI GAWTC 9 cut(s) 92, 659, 754, 784, 2113, 2672, 3032, 3308, 3996
TseFI GTSAC 2 cut(s) 2431, 3325
Tsp45I GTSAC 2 cut(s) 2431, 3325
TspGWI ACGGA 3 cut(s) 869, 3103, 3810
Tth111I GACNNNGTC 2 cut(s) 2552, 3280
Vha464I CTTAAG 1 cut(s) 2942
VpaK11BI GGWCC 6 cut(s) 18, 995, 1305, 2218, 2507, 4006
VspI ATTAAT 1 cut(s) 947
XapI RAATTY 9 cut(s) 1277, 1537, 1911, 2493, 3377, 3391, 3607, 3754, 4265
XbaI TCTAGA 3 cut(s) 2212, 3070, 3445
XceI RCATGY 2 cut(s) 3601, 3646
XcmI CCANNNNNNNNNTGG 1 cut(s) 2960
XmiI GTMKAC 3 cut(s) 2128, 2445, 4272
ZrmI AGTACT 1 cut(s) 1596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.