MD06G1099000.v1.1

ABC transporter C family member 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0002044
Physical Location & Seq
Reverse (-)
23497323 .. 23503742
6420 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1099000.v1.1.491

Sequence Viewer

Length: 4464 bp
ATGGGGGATGGTTTCTGGACCTTATTGATCTGCAGTTCTGACTGTTCAACTGAAGTTGGAAATGAATGCAGCTCTGGCTTTGTAGACAATCCGAATCCAGATTCATGTATCAACAATATTTTGGTCATTGCAGCTGATATTTTGCTTCTATTCATCTTGTTATGCATATTCGTATGCAAAATATCATCAAAGAAGGTTATACCACCATCTGAGTCTCAAACCTTCTCTCCAGTGTCAATAATCCCAGCGACCTTTAATGCTGGTTTGGCTTTGGCCTACTTGGGTTTTGGGATATGGACAATCTTCGAGAAAGTAAATGCAGGCCAGACTGTTTTACCTCTGCATGGATGGCTGGTATTATTTTTTCAAGGGTTCACATGGTTGCTTCTGGCTTTCACCATAAGCATTAACAAGCCACAACCGCAACATGTTGTGATAACGAAATCTTGTTTAATACTTTCCTTCTTTGTTGCCATTTTTCTTTCCGGTTCATCAATTTGGGAAGCTATTGTTGATGAGGAAGTGTCCGTTAAGATTGTTTTAAACATTTTTTGTTTTCCTGGATCAATTCTTTTACTATTTAGTGCATTTCAGGGAAACAATTTTTCCGAAGGTGGGTCAGAAACCCACAATGACGTCTTTTACATGCCTCTGCAAGGTGCAGATATAAGAGGTGAAATCAGTTCAGATGACAATGTAACACCTTTCGCAAAAGCAGGGTTATGGAGCTCAATATCATTTTGGTGGTTGAATACTTTAATGACGAAAGGTAAGCAAAAAATTCTCGAGTATGATGATATTCCGCAGCTGCATCAAGATGATCAAGCAAGAACGTGGTACTACATATTTATGGAGCAACTGAACAAACAGAAGGAAAGAGACTCATATGTTAAACCTTCTATCTTGTCCATAATTTTTCATTGCCAGAGGAAAGCTATTCTGACTTCGGGATTATTTGCACTGATCAAGACTCTCACCACATCAAGCAGTCCACTCTTTCTCATGGCGTTCATTAAGATTATTGAAGGCAATGCAGCTTTTAAATATGAAGGTTATGCCCTGACTTTTGGCCTCTTTGTTGTGAAAATCTTGGAGTCACTGTCGGAGAGGCAATGGTATTTTAAAACTAGACTGATCGGGCTTCAAGTGAGATCGTTGGTGTCAGCAGCAATATATCACAAGCAACTTCGACTCTCGAATTCTGCCAAGATGACTCATTCTCCTGGTGAGATAGTGAGTTATGTAACGGTGGATGCTTACAGAATCGGTGAGTTTCCATACTGGTTTCATCAGATATGGACCACAAGCCTTCAGCTGTGCCTTTCATTACTTATCGTTTACTTCTCTGTGGGGCTGGCAATTGCTGCAGCTCTAGTTGTACTCATATTGAGTACACTGGCAAGCTCGCCATTGGTGAAGTTGCAGCACGAGTATCAAACGAAGCTCATGGTAGCACAAAACAGGAGGTTGAAGGCCATAACAGAAGCACTTTCAAATATGAAAGTATTGAAATTGTATTCCTGGGAGACAAATTTTAAGACTCTGATAGAAGGTTTACGAACCGAAGAGTTAAAATTGGTATATCAAGTGTTGTCACAGAAGGGATATAATATGGCTCTATTCTGGGCATCTCCTCTTTTCGTATCGGCAGTTACTTTTTGGACATGCTACTTCCTTGGATTTACACTCTCTCCTAGTAATGTTTTCACGTTTTTAGCAACTTTACGCCTTGTTCAGGAGCCCATTAGGTTGACTGCGGATGTTTTTGGAGCATTTATTGAAGCAAAGGTTTCATTTTATCGGATTGAGAAGTTTCTCGATGCACAAGAGTTGGAGAATAGGCATACAAGGAAAGAGAGCTGTGCCACAGATGTTGAGCAGTCCATTTTATGTATAAGTTCTGAAATTTCATGGGACACTAATCCTTCAAAGGCTACATTAAGGAACATAAATTTGGTGGTGAAGCCAGGAGAGAAGGTAGCAATTTGTGGAGAGGTTGCCTCCGGTAAATCCACCCTTTTAGCTGCGATTCTCGGAGAAGTTCCATGCATAAATGGCATTGTTCAAGTATATGGGAAGATAGCGTACGCTGCTCAGTCTGCGTGGATCCAAACTGGAACTATACAAGAAAATATTTTGTTTGGTTCTGCCATGGATAATGTTAGATACCAAGAAACACTTAGCAAGTGTTCTTTAGTGAAGGACCTTGAGATGCTTCCATTCCGCGATCTCACTCAGATTGGAGAAAGAGGTGTCAATCTGAGTGGTGGGCAGAAGCAGCGCATTCAACTTGCGCGTGCACTGTATCAAAATGCTGATGTCTATCTCTTGGATGACCCTTTCAGCGCGGTTGATGCCCATATGGCAACAAACCTATTCAATGAATATGTCATGGGAGCTCTGTCAGGGAAGACGGTTTTACTTGTGACACATCAAGTAGACTTACTTCCAGCTTTTAATTCTATTTTGTTGATGTCTTCGGGGAAAATCTTGAGAGCAGCACCATACAAAGAGTTGCTGTCTTCTTGTGAAGAGTTCCAAGATCTTGTCCGTGCACACCATGACACTGCCGGTTGCGAGAGGCAAGTGGAGAATGCTTCTAATAGACAATATAAATCGTCAACGGTGGAGATTGAGGAGGTTAAAACTGAAGTACAGCAAAAGGAATCTTTAGGAGATCAATTAATTAAGAAAGAAGAGATAGAGACCGGGGACACTGGTTTCAAGCCATACATTCAGTACTTGAAACAGCGCAAGGGATTTTTGTATTTCTCCTCATCAATCTTTTTTCATTTGATATTCATAGTTGGGCAATTAATTCAATCCTATTGGTTGGCTTCCAAGCTACAGGATTATAGCGTATCAAGGGTCAAACTGTTCGTTGTGTATACAATGATCATGTTCATCATGTCATTCGGTGTGCTTCTTCGATTCTTCTGTTTAGTTGAATTAGGATGTGGAGCATCAACATCCATTTTCGACACACTACTCAACTCTCTTTTCCGAGCACCAATGCTGTTCTATGACTCAACACCAGTGGGAAGGATACTTAGTCGGGTCTCTAATGATATGAACATCGTCGACCTTGAAGTAGCTTTCAAGTTGGGAATTTCTGTTGGTTCAACTTTGATGACATACAGCATATATACAGTTTTGGTTTTGATTACTTGGCCAATCGTGTTTCTGATAATACCGACGATTTATGTCACTCTACTACTTCAGAAATACCACTTTGCTTCTGCAAAAGAATTAATGCGAATGAATGGCACGACTAAGTCTGCGCTTGCAAGCCACCTTGCCGAATCTATTGCTGGATCCTTGACAATCAGAGCTTTTGGAGAGGAGGATCGGTTCTTCTCGAAAAACTTGGAATTTATTGATGCAAACGCAAGCGCTGACTTCAATAGGTTTTCAGCGAATGAGTGGTTGATTGAACGTCTTGAATTGCTGTGTGTAATTATTCTTTCAGCCTCAGCACTTGCAATCACTTTGATCCAATTTGACGCATCTTCCTCTGGTTTTATTGGGATGGCACTCTCGTTTGGTCTGTCCTTAAATGTATACGTTGTAGTTTCGGTTCAATTCCAATGCATGCTAGAGAATTCAATGATATCTGTAGAAAGGGTAGAGCAATACATGCATATTCCCAGTGAAGCTCCAGAAGTAATCGAAGAAAACCGACCTGTGCACAGTTGGCCAACTGTTGGTAAAGTGGAAATACATGATTTAAAGGTAAGATATAGGCCAAATGCTCCGCTAGTTCTTCGTGGGATAAACTGTATAATTGAAGGAGGATACAAAATTGGGATCGTTGGCCGGACTGGAAGTGGGAAGACTACTCTTATCAGCGTTCTGTTTCGTCTGGTAGAGCCTACAGAGGGAAGGGTCATTGTCGATGACTATGACATTTGCAAAGTCGGGCTTCATGATTTAAGATCGCGTTTTGGGATCATACCACAAGATCCAACACTGTTCAGTGGATCTGTGAGATACAATCTTGACCCCTTATCAAAACATACGGATCATGAAATATGGGAGGTTTTGGAGAAATGTCAGTTACGAGAGGCCATCCAAGAAAAAGAGGAGGGCCTGGATTCATTAGTTGTACAAGATGGAACAAACTGGAGCATGGGACAGCGTCAGCTATTCTGTTTGGGACGCGCTTTGTTGAAGAGGAGCCGAATACTAGTCCTCGATGAAGCCACTGCATCAATGGACAATGCAACAGACTCTATCTTACAGAAAACTATAAGAACAGGATTTGCGGATTGCACTGTAATAACAGTGGCTCATAGGATACCGACTGTGATGGACTGCACTAAAGTGCTTGCTATTAGTGATGGGAGATTAGTAGAGTATGATGAGCCAATGAAGCTGATGAAGAATGAGGGCTCATTATTTGGGCAGCTAGTCAAGGAATATTGGTCTCGCGTTGCCAATGCTGCCATACACTCAGACGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976
Pfam Domains
Protein Families
ABC_membrane ABC_tran

Protein Analysis

1488

Amino Acids

166.68

Weight (kDa)

5.96

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABCC10_N PF24358 3 - 200 9.6e-71 ABCC10 N-terminal domain
ABC_membrane PF00664 314 - 581 1.1e-26 ABC transporter transmembrane region
ABC_tran PF00005 647 - 781 2.2e-20 ABC transporter
ABC_membrane PF00664 927 - 1180 8.2e-27 ABC transporter transmembrane region
ABC_tran PF00005 1255 - 1403 4.6e-24 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 639
AccB7I CCANNNNNTGG 1 cut(s) 3704
AccI GTMKAC 5 cut(s) 84, 2439, 2888, 3081, 3561
AccII CGCG 6 cut(s) 2226, 2296, 2348, 3940, 4161, 4431
AciI CCGC 7 cut(s) 422, 803, 1757, 2224, 2348, 3755, 4265
AcoI YGGCCR 3 cut(s) 3170, 3695, 3814
AcsI RAATTY 8 cut(s) 780, 1198, 1531, 1905, 1951, 3108, 3371, 3601
AcuI CTGAAG 4 cut(s) 72, 1295, 2670, 3203
AcyI GRCGYC 1 cut(s) 636
AfaI GTAC 7 cut(s) 839, 1380, 1393, 2087, 2655, 2741, 4107
AfeI AGCGCT 1 cut(s) 3394
AfiI CCNNNNNNNGG 6 cut(s) 344, 615, 656, 1735, 3704, 3878
AflIII ACRYGT 1 cut(s) 427
AhlI ACTAGT 1 cut(s) 4186
AjnI CCWGG 5 cut(s) 559, 1222, 1520, 1966, 4089
AjuI GAANNNNNNNTTGG 2 cut(s) 1937, 1969
AleI CACNNNNGTG 1 cut(s) 4322
AloI GAACNNNNNNTCC 2 cut(s) 3335, 3367
Alw21I GWGCWC 6 cut(s) 731, 2302, 2401, 2557, 3010, 3690
Alw26I GTCTC 6 cut(s) 219, 873, 1520, 2699, 3064, 4431
Alw44I GTGCAC 3 cut(s) 2298, 2553, 3686
Ama87I CYCGRG 1 cut(s) 785
Aor51HI AGCGCT 1 cut(s) 3394
ApaLI GTGCAC 3 cut(s) 2298, 2553, 3686
ApoI RAATTY 8 cut(s) 780, 1198, 1531, 1905, 1951, 3108, 3371, 3601
AseI ATTAAT 3 cut(s) 2684, 2816, 3251
AspLEI GCGC 7 cut(s) 2283, 2296, 2348, 2754, 3283, 3395, 4163
AspS9I GGNCC 4 cut(s) 18, 1299, 2203, 4087
AsuC2I CCSGG 1 cut(s) 2710
AsuHPI GGTGA 7 cut(s) 388, 686, 967, 1238, 1280, 1426, 1972
AvaI CYCGRG 1 cut(s) 785
AvaII GGWCC 3 cut(s) 18, 1299, 2203
BaeGI GKGCMC 3 cut(s) 2302, 2557, 3690
BalI TGGCCA 2 cut(s) 3172, 3697
BamHI GGATCC 2 cut(s) 2106, 3314
BanII GRGCYC 4 cut(s) 731, 1743, 2401, 4394
BarI GAAGNNNNNNTAC 4 cut(s) 2069, 2101, 2430, 2462
BauI CACGAG 1 cut(s) 1427
BbsI GAAGAC 4 cut(s) 2417, 2469, 2514, 3839
Bbv12I GWGCWC 6 cut(s) 731, 2302, 2401, 2557, 3010, 3690
BbvCI CCTCAGC 1 cut(s) 3472
BccI CCATC 8 cut(s) 2, 214, 342, 3523, 4076, 4106, 4303, 4334
BcgI CGANNNNNNTGC 2 cut(s) 3290, 3324
BciT130I CCWGG 5 cut(s) 561, 1224, 1522, 1968, 4091
BciVI GTATCC 3 cut(s) 3039, 3788, 4290
BclI TGATCA 3 cut(s) 820, 963, 2895
BcnI CCSGG 1 cut(s) 2710
BcoDI GTCTC 6 cut(s) 219, 873, 1520, 2699, 3064, 4431
BcuI ACTAGT 1 cut(s) 4186
BfaI CTAG 7 cut(s) 1128, 1373, 1695, 3596, 3758, 4187, 4409
BfmI CTRYAG 5 cut(s) 31, 1365, 2846, 3615, 3873
BfoI RGCGCY 1 cut(s) 3396
BfuI GTATCC 3 cut(s) 3039, 3788, 4290
BglI GCCNNNNNGGC 1 cut(s) 2363
BglII AGATCT 1 cut(s) 2542
BmcAI AGTACT 1 cut(s) 2741
Bme1390I CCNGG 6 cut(s) 561, 1224, 1522, 1968, 2710, 4091
Bme18I GGWCC 3 cut(s) 18, 1299, 2203
BmeT110I CYCGRG 1 cut(s) 785
BmgT120I GGNCC 4 cut(s) 18, 1299, 2203, 4087
BmiI GGNNCC 4 cut(s) 1740, 2108, 3316, 4178
BmrFI CCNGG 6 cut(s) 561, 1224, 1522, 1968, 2710, 4091
BmrI ACTGGG 1 cut(s) 3642
BmuI ACTGGG 1 cut(s) 3642
BpiI GAAGAC 4 cut(s) 2417, 2469, 2514, 3839
BplI GAGNNNNNCTC 2 cut(s) 1985, 2017
BpmI CTGGAG 3 cut(s) 213, 3642, 4144
Bpu10I CCTNAGC 1 cut(s) 3472
BpuEI CTTGAG 2 cut(s) 2228, 2512
BpuMI CCSGG 1 cut(s) 2710
BsaBI GATNNNNATC 1 cut(s) 2322
BsaHI GRCGYC 1 cut(s) 636
BsaI GGTCTC 3 cut(s) 2699, 3064, 4431
BsaJI CCNNGG 4 cut(s) 1521, 1675, 2151, 2709
BsaWI WCCGGW 2 cut(s) 485, 2003
Bsc4I CCNNNNNNNGG 6 cut(s) 344, 615, 656, 1735, 3704, 3878
Bse118I RCCGGY 1 cut(s) 2570
Bse1I ACTGG 9 cut(s) 230, 1286, 1401, 2119, 2722, 3035, 3648, 3826, 4127
Bse3DI GCAATG 4 cut(s) 126, 919, 1036, 1118
Bse8I GATNNNNATC 1 cut(s) 2322
BseBI CCWGG 5 cut(s) 561, 1224, 1522, 1968, 4091
BseDI CCNNGG 4 cut(s) 1521, 1675, 2151, 2709
BseGI GGATG 9 cut(s) 13, 353, 1258, 1765, 2338, 2960, 2969, 3534, 4068
BseJI GATNNNNATC 1 cut(s) 2322
BseLI CCNNNNNNNGG 6 cut(s) 344, 615, 656, 1735, 3704, 3878
BseMI GCAATG 4 cut(s) 126, 919, 1036, 1118
BseMII CTCAG 5 cut(s) 201, 2108, 2249, 2252, 3486
BseNI ACTGG 9 cut(s) 230, 1286, 1401, 2119, 2722, 3035, 3648, 3826, 4127
BseRI GAGGAG 6 cut(s) 1623, 2651, 2764, 3356, 4097, 4189
BseSI GKGCMC 3 cut(s) 2302, 2557, 3690
BseYI CCCAGC 1 cut(s) 244
BsgI GTGCAG 2 cut(s) 681, 4300
Bsh1236I CGCG 6 cut(s) 2226, 2296, 2348, 3940, 4161, 4431
BsiHKAI GWGCWC 6 cut(s) 731, 2302, 2401, 2557, 3010, 3690
BsiHKCI CYCGRG 1 cut(s) 785
BsiSI CCGG 5 cut(s) 486, 2004, 2571, 2709, 3817
BsiWI CGTACG 1 cut(s) 2085
BslFI GGGAC 4 cut(s) 1928, 2726, 4146, 4170
BslI CCNNNNNNNGG 6 cut(s) 344, 615, 656, 1735, 3704, 3878
BsmAI GTCTC 6 cut(s) 219, 873, 1520, 2699, 3064, 4431
BsmFI GGGAC 4 cut(s) 1928, 2726, 4146, 4170
BsmI GAATGC 3 cut(s) 71, 2283, 2599
Bso31I GGTCTC 3 cut(s) 2699, 3064, 4431
BsoBI CYCGRG 1 cut(s) 785
Bsp1286I GDGCHC 8 cut(s) 731, 1743, 2302, 2401, 2557, 3010, 3690, 4394
Bsp1407I TGTACA 1 cut(s) 4105
Bsp19I CCATGG 1 cut(s) 2151
BspACI CCGC 7 cut(s) 422, 803, 1757, 2224, 2348, 3755, 4265
BspCNI CTCAG 5 cut(s) 202, 2107, 2248, 2253, 3485
BspFNI CGCG 6 cut(s) 2226, 2296, 2348, 3940, 4161, 4431
BspHI TCATGA 2 cut(s) 3925, 4024
BspLI GGNNCC 4 cut(s) 1740, 2108, 3316, 4178
BspMAI CTGCAG 2 cut(s) 35, 1369
BspTNI GGTCTC 3 cut(s) 2699, 3064, 4431
BsrDI GCAATG 4 cut(s) 126, 919, 1036, 1118
BsrFI RCCGGY 1 cut(s) 2570
BsrGI TGTACA 1 cut(s) 4105
BsrI ACTGG 9 cut(s) 230, 1286, 1401, 2119, 2722, 3035, 3648, 3826, 4127
BssAI RCCGGY 1 cut(s) 2570
BssECI CCNNGG 4 cut(s) 1521, 1675, 2151, 2709
BssNAI GTATAC 2 cut(s) 2889, 3562
BssNI GRCGYC 1 cut(s) 636
BssSI CACGAG 1 cut(s) 1427
BssT1I CCWWGG 2 cut(s) 1675, 2151
Bst1107I GTATAC 2 cut(s) 2889, 3562
Bst2BI CACGAG 1 cut(s) 1427
Bst2UI CCWGG 5 cut(s) 561, 1224, 1522, 1968, 4091
Bst6I CTCTTC 4 cut(s) 1560, 2526, 2691, 4166
BstACI GRCGYC 1 cut(s) 636
BstAPI GCANNNNNTGC 2 cut(s) 1364, 3637
BstAUI TGTACA 1 cut(s) 4105
BstDEI CTNAG 9 cut(s) 210, 2094, 2180, 2235, 2261, 3050, 3273, 3472, 4453
BstDSI CCRYGG 1 cut(s) 2151
BstENI CCTNNNNNAGG 2 cut(s) 654, 1733
BstF5I GGATG 9 cut(s) 13, 353, 1258, 1765, 2338, 2960, 2969, 3534, 4068
BstFNI CGCG 6 cut(s) 2226, 2296, 2348, 3940, 4161, 4431
BstH2I RGCGCY 1 cut(s) 3396
BstHHI GCGC 7 cut(s) 2283, 2296, 2348, 2754, 3283, 3395, 4163
BstMAI GTCTC 6 cut(s) 219, 873, 1520, 2699, 3064, 4431
BstNI CCWGG 5 cut(s) 561, 1224, 1522, 1968, 4091
BstNSI RCATGY 5 cut(s) 431, 649, 1668, 3595, 3640
BstSCI CCNGG 6 cut(s) 559, 1222, 1520, 1966, 2708, 4089
BstSFI CTRYAG 5 cut(s) 31, 1365, 2846, 3615, 3873
BstSLI GKGCMC 3 cut(s) 2302, 2557, 3690
BstUI CGCG 6 cut(s) 2226, 2296, 2348, 3940, 4161, 4431
BstV2I GAAGAC 4 cut(s) 2417, 2469, 2514, 3839
BstX2I RGATCY 5 cut(s) 2106, 2542, 3314, 3961, 3980
BstYI RGATCY 5 cut(s) 2106, 2542, 3314, 3961, 3980
BstZ17I GTATAC 2 cut(s) 2889, 3562
BsuI GTATCC 3 cut(s) 3039, 3788, 4290
BtgI CCRYGG 1 cut(s) 2151
BtsCI GGATG 9 cut(s) 13, 353, 1258, 1765, 2338, 2960, 2969, 3534, 4068
BtsI GCAGTG 2 cut(s) 2565, 4203
CciI TCATGA 2 cut(s) 3925, 4024
CfoI GCGC 7 cut(s) 2283, 2296, 2348, 2754, 3283, 3395, 4163
Cfr10I RCCGGY 1 cut(s) 2570
Cfr13I GGNCC 4 cut(s) 18, 1299, 2203, 4087
CseI GACGC 3 cut(s) 3512, 4127, 4167
Csp6I GTAC 7 cut(s) 838, 1379, 1392, 2086, 2654, 2740, 4106
CspCI CAANNNNNGTGG 6 cut(s) 1855, 1890, 2245, 2280, 3018, 3053
CviQI GTAC 7 cut(s) 838, 1379, 1392, 2086, 2654, 2740, 4106
DdeI CTNAG 9 cut(s) 210, 2094, 2180, 2235, 2261, 3050, 3273, 3472, 4453
DraI TTTAAA 4 cut(s) 543, 1042, 1123, 3729
EaeI YGGCCR 3 cut(s) 3170, 3695, 3814
Eam1104I CTCTTC 4 cut(s) 1560, 2526, 2691, 4166
EarI CTCTTC 4 cut(s) 1560, 2526, 2691, 4166
Ecl136II GAGCTC 2 cut(s) 729, 2399
Eco130I CCWWGG 2 cut(s) 1675, 2151
Eco24I GRGCYC 4 cut(s) 731, 1743, 2401, 4394
Eco31I GGTCTC 3 cut(s) 2699, 3064, 4431
Eco32I GATATC 1 cut(s) 3612
Eco47I GGWCC 3 cut(s) 18, 1299, 2203
Eco47III AGCGCT 1 cut(s) 3394
Eco53kI GAGCTC 2 cut(s) 729, 2399
Eco57I CTGAAG 4 cut(s) 72, 1295, 2670, 3203
Eco88I CYCGRG 1 cut(s) 785
EcoICRI GAGCTC 2 cut(s) 729, 2399
EcoNI CCTNNNNNAGG 2 cut(s) 654, 1733
EcoO109I RGGNCCY 2 cut(s) 2203, 4087
EcoRI GAATTC 2 cut(s) 1198, 3601
EcoRII CCWGG 5 cut(s) 559, 1222, 1520, 1966, 4089
EcoRV GATATC 1 cut(s) 3612
EcoT14I CCWWGG 2 cut(s) 1675, 2151
EcoT22I ATGCAT 4 cut(s) 167, 2051, 3593, 3642
EcoT38I GRGCYC 4 cut(s) 731, 1743, 2401, 4394
ErhI CCWWGG 2 cut(s) 1675, 2151
FalI AAGNNNNNCTT 4 cut(s) 2163, 2195, 3906, 3938
FaqI GGGAC 4 cut(s) 1928, 2726, 4146, 4170
FauNDI CATATG 2 cut(s) 886, 2361
FbaI TGATCA 3 cut(s) 820, 963, 2895
FblI GTMKAC 5 cut(s) 84, 2439, 2888, 3081, 3561
FokI GGATG 9 cut(s) 20, 360, 1265, 1772, 2345, 2956, 2967, 3541, 4055
FriOI GRGCYC 4 cut(s) 731, 1743, 2401, 4394
FspBI CTAG 7 cut(s) 1128, 1373, 1695, 3596, 3758, 4187, 4409
GlaI GCGC 7 cut(s) 2282, 2295, 2347, 2753, 3282, 3394, 4162
GsaI CCCAGC 1 cut(s) 248
GsuI CTGGAG 3 cut(s) 213, 3642, 4144
HaeII RGCGCY 1 cut(s) 3396
HapII CCGG 5 cut(s) 486, 2004, 2571, 2709, 3817
HgaI GACGC 3 cut(s) 3512, 4127, 4167
HhaI GCGC 7 cut(s) 2283, 2296, 2348, 2754, 3283, 3395, 4163
Hin1I GRCGYC 1 cut(s) 636
Hin6I GCGC 7 cut(s) 2281, 2294, 2346, 2752, 3281, 3393, 4161
HinP1I GCGC 7 cut(s) 2281, 2294, 2346, 2752, 3281, 3393, 4161
HincII GTYRAC 3 cut(s) 1752, 2622, 3082
HindII GTYRAC 3 cut(s) 1752, 2622, 3082
HpaII CCGG 5 cut(s) 486, 2004, 2571, 2709, 3817
HphI GGTGA 7 cut(s) 388, 686, 967, 1238, 1280, 1426, 1972
Hpy99I CGWCG 2 cut(s) 3083, 3199
HpyCH4IV ACGT 5 cut(s) 636, 833, 1709, 3436, 3564
HpyF3I CTNAG 9 cut(s) 210, 2094, 2180, 2235, 2261, 3050, 3273, 3472, 4453
HpySE526I ACGT 5 cut(s) 636, 833, 1709, 3436, 3564
Hsp92I GRCGYC 1 cut(s) 636
HspAI GCGC 7 cut(s) 2281, 2294, 2346, 2752, 3281, 3393, 4161
Ksp22I TGATCA 3 cut(s) 820, 963, 2895
MaeI CTAG 7 cut(s) 1128, 1373, 1695, 3596, 3758, 4187, 4409
MaeII ACGT 5 cut(s) 636, 833, 1709, 3436, 3564
MaeIII GTNAC 8 cut(s) 697, 1095, 1243, 1593, 1651, 2425, 3205, 4056
MfeI CAATTG 1 cut(s) 1359
MflI RGATCY 5 cut(s) 2106, 2542, 3314, 3961, 3980
MhlI GDGCHC 8 cut(s) 731, 1743, 2302, 2401, 2557, 3010, 3690, 4394
MlsI TGGCCA 2 cut(s) 3172, 3697
MluNI TGGCCA 2 cut(s) 3172, 3697
MlyI GAGTC 9 cut(s) 221, 875, 964, 1103, 1185, 1207, 1534, 3020, 4223
MmeI TCCRAC 4 cut(s) 37, 1083, 1812, 3989
Mox20I TGGCCA 2 cut(s) 3172, 3697
Mph1103I ATGCAT 4 cut(s) 167, 2051, 3593, 3642
MscI TGGCCA 2 cut(s) 3172, 3697
MslI CAYNNNNRTG 4 cut(s) 742, 816, 848, 4322
Msp20I TGGCCA 2 cut(s) 3172, 3697
MspA1I CMGCKG 3 cut(s) 134, 808, 1315
MspI CCGG 5 cut(s) 486, 2004, 2571, 2709, 3817
MspR9I CCNGG 6 cut(s) 561, 1224, 1522, 1968, 2710, 4091
MunI CAATTG 1 cut(s) 1359
Mva1269I GAATGC 3 cut(s) 71, 2283, 2599
MvaI CCWGG 5 cut(s) 561, 1224, 1522, 1968, 4091
MvnI CGCG 6 cut(s) 2226, 2296, 2348, 3940, 4161, 4431
NciI CCSGG 1 cut(s) 2710
NcoI CCATGG 1 cut(s) 2151
NdeI CATATG 2 cut(s) 886, 2361
NlaIV GGNNCC 4 cut(s) 1740, 2108, 3316, 4178
NmuCI GTSAC 4 cut(s) 1095, 1593, 2425, 3205
NsiI ATGCAT 4 cut(s) 167, 2051, 3593, 3642
NspI RCATGY 5 cut(s) 431, 649, 1668, 3595, 3640
OliI CACNNNNGTG 1 cut(s) 4322
PacI TTAATTAA 1 cut(s) 2688
PaeI GCATGC 1 cut(s) 3595
PaeR7I CTCGAG 1 cut(s) 785
PagI TCATGA 2 cut(s) 3925, 4024
PciI ACATGT 1 cut(s) 427
PctI GAATGC 3 cut(s) 71, 2283, 2599
PfeI GAWTC 8 cut(s) 94, 101, 1263, 2029, 2666, 2931, 3302, 4094
Pfl23II CGTACG 1 cut(s) 2085
PflFI GACNNNGTC 2 cut(s) 3274, 4137
PflMI CCANNNNNTGG 1 cut(s) 3704
PfoI TCCNGGA 1 cut(s) 559
PleI GAGTC 9 cut(s) 220, 875, 964, 1102, 1185, 1207, 1534, 3020, 4223
PpsI GAGTC 9 cut(s) 220, 875, 964, 1102, 1185, 1207, 1534, 3020, 4223
PpuMI RGGWCCY 1 cut(s) 2203
PscI ACATGT 1 cut(s) 427
PshBI ATTAAT 3 cut(s) 2684, 2816, 3251
Psp124BI GAGCTC 2 cut(s) 731, 2401
Psp5II RGGWCCY 1 cut(s) 2203
Psp6I CCWGG 5 cut(s) 559, 1222, 1520, 1966, 4089
PspFI CCCAGC 1 cut(s) 244
PspGI CCWGG 5 cut(s) 559, 1222, 1520, 1966, 4089
PspLI CGTACG 1 cut(s) 2085
PspN4I GGNNCC 4 cut(s) 1740, 2108, 3316, 4178
PspPI GGNCC 4 cut(s) 18, 1299, 2203, 4087
PspPPI RGGWCCY 1 cut(s) 2203
PsrI GAACNNNNNNTAC 2 cut(s) 3561, 3593
PstI CTGCAG 2 cut(s) 35, 1369
PsuI RGATCY 5 cut(s) 2106, 2542, 3314, 3961, 3980
PsyI GACNNNGTC 2 cut(s) 3274, 4137
PvuII CAGCTG 3 cut(s) 134, 808, 1315
RsaI GTAC 7 cut(s) 839, 1380, 1393, 2087, 2655, 2741, 4107
RsaNI GTAC 7 cut(s) 838, 1379, 1392, 2086, 2654, 2740, 4106
RseI CAYNNNNRTG 4 cut(s) 742, 816, 848, 4322
SacI GAGCTC 2 cut(s) 731, 2401
SalI GTCGAC 1 cut(s) 3080
Sau96I GGNCC 4 cut(s) 18, 1299, 2203, 4087
ScaI AGTACT 1 cut(s) 2741
SchI GAGTC 9 cut(s) 221, 875, 964, 1103, 1185, 1207, 1534, 3020, 4223
ScrFI CCNGG 6 cut(s) 561, 1224, 1522, 1968, 2710, 4091
SduI GDGCHC 8 cut(s) 731, 1743, 2302, 2401, 2557, 3010, 3690, 4394
SfcI CTRYAG 5 cut(s) 31, 1365, 2846, 3615, 3873
Sfr274I CTCGAG 1 cut(s) 785
SinI GGWCC 3 cut(s) 18, 1299, 2203
SlaI CTCGAG 1 cut(s) 785
SmiMI CAYNNNNRTG 4 cut(s) 742, 816, 848, 4322
SmlI CTYRAG 3 cut(s) 785, 2207, 2491
SmoI CTYRAG 3 cut(s) 785, 2207, 2491
SpeI ACTAGT 1 cut(s) 4186
SphI GCATGC 1 cut(s) 3595
SsiI CCGC 7 cut(s) 422, 803, 1757, 2224, 2348, 3755, 4265
SspI AATATT 3 cut(s) 118, 2134, 4421
SspMI CTAG 7 cut(s) 1128, 1373, 1695, 3596, 3758, 4187, 4409
SstI GAGCTC 2 cut(s) 731, 2401
StyD4I CCNGG 6 cut(s) 559, 1222, 1520, 1966, 2708, 4089
StyI CCWWGG 2 cut(s) 1675, 2151
TaiI ACGT 5 cut(s) 639, 836, 1712, 3439, 3567
TatI WGTACW 5 cut(s) 1378, 1391, 2653, 2739, 4105
TfiI GAWTC 8 cut(s) 94, 101, 1263, 2029, 2666, 2931, 3302, 4094
TseFI GTSAC 4 cut(s) 1095, 1593, 2425, 3205
Tsp45I GTSAC 4 cut(s) 1095, 1593, 2425, 3205
TspGWI ACGGA 3 cut(s) 517, 2540, 4034
Tth111I GACNNNGTC 2 cut(s) 3274, 4137
Van91I CCANNNNNTGG 1 cut(s) 3704
VneI GTGCAC 3 cut(s) 2298, 2553, 3686
VpaK11BI GGWCC 3 cut(s) 18, 1299, 2203
VspI ATTAAT 3 cut(s) 2684, 2816, 3251
XagI CCTNNNNNAGG 2 cut(s) 654, 1733
XapI RAATTY 8 cut(s) 780, 1198, 1531, 1905, 1951, 3108, 3371, 3601
XceI RCATGY 5 cut(s) 431, 649, 1668, 3595, 3640
XcmI CCANNNNNNNNNTGG 1 cut(s) 4210
XhoI CTCGAG 1 cut(s) 785
XmiI GTMKAC 5 cut(s) 84, 2439, 2888, 3081, 3561
XspI CTAG 7 cut(s) 1128, 1373, 1695, 3596, 3758, 4187, 4409
ZraI GACGTC 1 cut(s) 637
ZrmI AGTACT 1 cut(s) 2741
Zsp2I ATGCAT 4 cut(s) 167, 2051, 3593, 3642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.