Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002044

Physical Location & Seq

Genomic Coordinates Forward (+)

1866672 .. 1868515

Gene Structure 1844 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0026300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCTAAGATCGAAGCCGTTCTAGAAGCTTGGCCACTGTTGAAGTCGCTTTTAGAAGATTATGGCATTTCATGTACAATGTATCTGGCTGAGCGTTTCATGACATTATCAACAACCAGCGGGACTGAAGATCCAGATATTATTTACAAGGCTAGGGATGTTCTTGAACTTTTGTCATTAACTCGTGTTCCACCATCAATGGTAATGAAAGTACTGAATGAGAATCTGCAATATGACATCATCAAGACTGCGTATCGTAATGGTGGTTTTTGCTCACAATATATGATTGACAGGAAGCTAATTAAGAAGCGGCGTGGACTACTTCGGCCCTACTTAAAGGAACTTGGGGTGCTGACGGGTTGTGAGATATATGTTGATGGATGCGCTGTTACTGCTATGGGTTTTAAGCGTCAAGGATTAAAGTTGGTCAGGATTGGCGTGAAAGAGTGCCTTGTTAACAATGTGAGACCTAAAACTATGCTTCGGAAGATGAAGTTGACCCTTGAAAGGATGAAAATGAAAGAGGAAATTACTGCCGGAGAATTTCCTCCTGTGGAATCTGCTGGGAACATGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01523 ko01524 ko02010 ko04976 map01523 map01524 map02010 map04976

Pfam Domains

Protein Families

ABC_membrane ABC_tran

Protein Analysis

192

Amino Acids

21.85

Weight (kDa)

9.25

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_KRR1_1st	PF17903	8 - 71	1.9e-10	Krr1 KH1 domain
KH_KRR1_2nd	PF21800	98 - 164	3.8e-07	KRR1 small subunit processome component, second KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002044)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g03781 FvH4_5g03782 FvH4_5g03784 FvH4_5g03800
malus_domestica	MD06G1098900.v1.1 MD06G1099000.v1.1 MD06G1099100.v1.1 MD14G1118100.v1.1 MD14G1118200.v1.1
prunus_persica	Prupe.5G112700_v2.0.a1 Prupe.5G112700_v2.0.a1 Prupe.5G112700_v2.0.a1 Prupe.5G112700_v2.0.a1 Prupe.5G112800_v2.0.a1
pyrus_communis	pycom06g09410 pycom06g09420 pycom06g09460
rosa_chinensis	RchiOBHm_Chr7g0195711 RchiOBHm_Chr7g0195721 RchiOBHm_Chr7g0195751 RchiOBHm_Chr7g0195781 RchiOBHm_Chr7g0195801
rosa_laevigata	RLG00000004087 RLG00000004090 RLG00000004092 RLG00000004093
rosa_multiflora	Rmu_sc0003314.1_g000027 Rmu_sc0003314.1_g000031
rosa_roxburghii	Rroxscaffold_3G00260080 Rroxscaffold_3G00260190 Rroxscaffold_3G00260200
rosa_rugosa	Rorug07G0025800.1 Rorug07G0025900 Rorug07G0026000 Rorug07G0026300
rosa_samantha	Rh7BG155600 Rh7BG155700 Rh7BG155900 Rh7BG156000 Rh7CG159600 Rh7CG159800
rosa_wichuraiana	Rw7G013140 Rw7G013150 Rw7G013160 Rw7G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	120, 310
AclWI	GGATC	1 cut(s)	125
AcoI	YGGCCR	1 cut(s)	32
AcsI	RAATTY	1 cut(s)	542
AcuI	CTGAAG	1 cut(s)	147
AfaI	GTAC	2 cut(s)	76, 213
AfiI	CCNNNNNNNGG	1 cut(s)	507
AgsI	TTSAA	3 cut(s)	43, 167, 506
AluBI	AGCT	2 cut(s)	29, 298
AluI	AGCT	2 cut(s)	29, 298
Alw26I	GTCTC	1 cut(s)	460
AlwI	GGATC	1 cut(s)	125
AoxI	GGCC	2 cut(s)	32, 326
ApoI	RAATTY	1 cut(s)	542
Asp700I	GAANNNNTTC	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	327
BalI	TGGCCA	1 cut(s)	34
BauI	CACGAG	1 cut(s)	183
BccI	CCATC	2 cut(s)	202, 371
BceAI	ACGGC	1 cut(s)	2
BcoDI	GTCTC	1 cut(s)	460
BfaI	CTAG	2 cut(s)	23, 153
BisI	GCNGC	1 cut(s)	311
BlpI	GCTNAGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	312
BmcAI	AGTACT	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	327
BmsI	GCATC	1 cut(s)	371
Bpu1102I	GCTNAGC	1 cut(s)	90
BsaI	GGTCTC	1 cut(s)	460
Bsc4I	CCNNNNNNNGG	1 cut(s)	507
BseGI	GGATG	3 cut(s)	163, 386, 516
BseLI	CCNNNNNNNGG	1 cut(s)	507
BseMII	CTCAG	1 cut(s)	81
BseYI	CCCAGC	1 cut(s)	563
BshFI	GGCC	2 cut(s)	34, 328
BsiSI	CCGG	1 cut(s)	537
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	507
BsmAI	GTCTC	1 cut(s)	460
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	2 cut(s)	34, 328
Bso31I	GGTCTC	1 cut(s)	460
Bsp1407I	TGTACA	1 cut(s)	74
Bsp143I	GATC	2 cut(s)	9, 130
Bsp1720I	GCTNAGC	1 cut(s)	90
BspACI	CCGC	2 cut(s)	120, 310
BspANI	GGCC	2 cut(s)	34, 328
BspCNI	CTCAG	1 cut(s)	82
BspHI	TCATGA	1 cut(s)	99
BspPI	GGATC	1 cut(s)	125
BspTNI	GGTCTC	1 cut(s)	460
BsrGI	TGTACA	1 cut(s)	74
BssMI	GATC	2 cut(s)	9, 130
BssSI	CACGAG	1 cut(s)	183
Bst2BI	CACGAG	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	39
BstAUI	TGTACA	1 cut(s)	74
BstDEI	CTNAG	2 cut(s)	6, 90
BstF5I	GGATG	3 cut(s)	163, 386, 516
BstHHI	GCGC	1 cut(s)	386
BstKTI	GATC	2 cut(s)	12, 133
BstMAI	GTCTC	1 cut(s)	460
BstMBI	GATC	2 cut(s)	9, 130
BstMWI	GCNNNNNNNGC	1 cut(s)	392
BstNSI	RCATGY	1 cut(s)	574
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BsuRI	GGCC	2 cut(s)	34, 328
BtsCI	GGATG	3 cut(s)	163, 386, 516
BtsIMutI	CAGTG	1 cut(s)	35
CciI	TCATGA	1 cut(s)	99
CfoI	GCGC	1 cut(s)	386
Cfr13I	GGNCC	1 cut(s)	327
CseI	GACGC	1 cut(s)	398
Csp6I	GTAC	2 cut(s)	75, 212
CviAII	CATG	3 cut(s)	72, 100, 571
CviJI	RGCY	8 cut(s)	5, 17, 29, 34, 89, 152, 298, 328
CviKI_1	RGCY	8 cut(s)	5, 17, 29, 34, 89, 152, 298, 328
CviQI	GTAC	2 cut(s)	75, 212
DdeI	CTNAG	2 cut(s)	6, 90
DpnI	GATC	2 cut(s)	11, 132
DpnII	GATC	2 cut(s)	9, 130
EaeI	YGGCCR	1 cut(s)	32
Eco31I	GGTCTC	1 cut(s)	460
Eco57I	CTGAAG	1 cut(s)	147
EcoT22I	ATGCAT	1 cut(s)	576
FaeI	CATG	3 cut(s)	75, 103, 574
FalI	AAGNNNNNCTT	2 cut(s)	435, 467
FaqI	GGGAC	1 cut(s)	136
FatI	CATG	3 cut(s)	71, 99, 570
FauI	CCCGC	1 cut(s)	113
Fnu4HI	GCNGC	1 cut(s)	311
FokI	GGATG	3 cut(s)	170, 393, 523
Fsp4HI	GCNGC	1 cut(s)	311
FspBI	CTAG	2 cut(s)	23, 153
GlaI	GCGC	1 cut(s)	385
GluI	GCNGC	1 cut(s)	311
GsaI	CCCAGC	1 cut(s)	567
HaeIII	GGCC	2 cut(s)	34, 328
HapII	CCGG	1 cut(s)	537
HgaI	GACGC	1 cut(s)	398
HhaI	GCGC	1 cut(s)	386
Hin1II	CATG	3 cut(s)	75, 103, 574
Hin6I	GCGC	1 cut(s)	384
HinP1I	GCGC	1 cut(s)	384
HincII	GTYRAC	2 cut(s)	457, 498
HindII	GTYRAC	2 cut(s)	457, 498
HindIII	AAGCTT	1 cut(s)	27
HinfI	GANTC	2 cut(s)	223, 557
HpaI	GTTAAC	1 cut(s)	457
HpaII	CCGG	1 cut(s)	537
Hpy166II	GTNNAC	3 cut(s)	317, 457, 498
Hpy188I	TCNGA	1 cut(s)	486
Hpy188III	TCNNGA	6 cut(s)	23, 100, 134, 164, 244, 430
Hpy8I	GTNNAC	3 cut(s)	317, 457, 498
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4V	TGCA	2 cut(s)	229, 574
HpyF10VI	GCNNNNNNNGC	1 cut(s)	392
HpyF3I	CTNAG	2 cut(s)	6, 90
Hsp92II	CATG	3 cut(s)	75, 103, 574
HspAI	GCGC	1 cut(s)	384
KspAI	GTTAAC	1 cut(s)	457
Kzo9I	GATC	2 cut(s)	9, 130
LpnPI	CCDG	8 cut(s)	71, 130, 147, 277, 415, 549, 550, 564
LweI	GCATC	1 cut(s)	371
MaeI	CTAG	2 cut(s)	23, 153
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	2 cut(s)	11, 132
MboI	GATC	2 cut(s)	9, 130
MboII	GAAGA	3 cut(s)	68, 140, 499
MflI	RGATCY	1 cut(s)	130
MlsI	TGGCCA	1 cut(s)	34
MluCI	AATT	3 cut(s)	300, 528, 542
MluNI	TGGCCA	1 cut(s)	34
MnlI	CCTC	2 cut(s)	517, 558
Mox20I	TGGCCA	1 cut(s)	34
Mph1103I	ATGCAT	1 cut(s)	576
MroXI	GAANNNNTTC	1 cut(s)	18
MscI	TGGCCA	1 cut(s)	34
MseI	TTAA	7 cut(s)	179, 303, 335, 405, 419, 456, 577
Msp20I	TGGCCA	1 cut(s)	34
MspA1I	CMGCKG	1 cut(s)	120
MspI	CCGG	1 cut(s)	537
MwoI	GCNNNNNNNGC	1 cut(s)	392
NdeII	GATC	2 cut(s)	9, 130
NlaIII	CATG	3 cut(s)	75, 103, 574
NsiI	ATGCAT	1 cut(s)	576
NspI	RCATGY	1 cut(s)	574
PagI	TCATGA	1 cut(s)	99
PdmI	GAANNNNTTC	1 cut(s)	18
PfeI	GAWTC	2 cut(s)	223, 557
PkrI	GCNGC	1 cut(s)	312
PspFI	CCCAGC	1 cut(s)	563
PspPI	GGNCC	1 cut(s)	327
PsuI	RGATCY	1 cut(s)	130
RsaI	GTAC	2 cut(s)	76, 213
RsaNI	GTAC	2 cut(s)	75, 212
SaqAI	TTAA	7 cut(s)	179, 303, 335, 405, 419, 456, 577
SatI	GCNGC	1 cut(s)	311
Sau3AI	GATC	2 cut(s)	9, 130
Sau96I	GGNCC	1 cut(s)	327
ScaI	AGTACT	1 cut(s)	213
SetI	ASST	3 cut(s)	31, 300, 472
SfaNI	GCATC	1 cut(s)	371
Sse9I	AATT	3 cut(s)	300, 528, 542
SsiI	CCGC	2 cut(s)	120, 310
SspMI	CTAG	2 cut(s)	23, 153
TaaI	ACNGT	1 cut(s)	39
TaqI	TCGA	1 cut(s)	12
TasI	AATT	3 cut(s)	300, 528, 542
TatI	WGTACW	2 cut(s)	74, 211
TauI	GCSGC	1 cut(s)	313
TfiI	GAWTC	2 cut(s)	223, 557
Tru1I	TTAA	7 cut(s)	179, 303, 335, 405, 419, 456, 577
Tru9I	TTAA	7 cut(s)	179, 303, 335, 405, 419, 456, 577
TscAI	CASTG	1 cut(s)	42
TspDTI	ATGAA	6 cut(s)	60, 88, 221, 506, 527, 533
TspRI	CASTG	1 cut(s)	42
XapI	RAATTY	1 cut(s)	542
XbaI	TCTAGA	1 cut(s)	22
XceI	RCATGY	1 cut(s)	574
XmnI	GAANNNNTTC	1 cut(s)	18
XspI	CTAG	2 cut(s)	23, 153
ZrmI	AGTACT	1 cut(s)	213
Zsp2I	ATGCAT	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.